BAC Information

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BAC

Clone NameB6Ng01-305L12
Chromosome18 (Build37)
Map Location 75,479,102 - 75,582,329
singlet/doubletdoublet
Overlap geneSmad7
Upstream geneCcdc11, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym, LOC628356, EG667777
Downstream geneGm672, Zbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305L12.bB6Ng01-305L12.g
ACCGA098940GA098941
length305927
definitionB6Ng01-305L12.b B6Ng01-305L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,582,025 - 75,582,329)(75,479,102 - 75,480,023)
sequence
tgtgtgtgagaaggagttctgttagaaaaaagtctgtgagggagagaatt
ctcttatgtgagagaattctgtgtgtgagagagaattttctgtgtgagag
agacaattctgcctgtgagagacagttctgtctgtgagagacaatcttgt
gagaggaagagaattctgtgagagagaaaagaatctctgtatgagagaca
gttctgagtgtgtgtgagagaagattctgtgtgtgagagataattttctg
tgtgagagacagttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtg
gaattccaagactatcacacacagtttcccccacctccaccccaccccca
ccccggcctggaagccaggcttgttacatcatgtttcagagccctgagtc
acttcggatgtctctggctctggccacagaaaggcaagaagcccacagga
gagaagccgtgagcccagccagtctcccacagacccactcagcagctcca
tgtacaggaccaagctattttaggggataagatcaaatgggggggtacca
gttgccccagctacttttgactctgtgctcggggctatttctgtgagggc
acaggctggtgacaccccacgtcaccaagcactccgggtctgaaattaaa
tgtgtctgcctagaagagtgagtgtgaattcctataggatagatggttgc
ctggcaacacagtgtcaaggccaaaacataagccagggcaggatgggtga
cagaaacactcaggtctgcagtgccaagtcaagcctgtgacagtctcaag
agtctgcagaaattaatgtttgctctgggcagctgtgtctctagcataca
catacatacttgcgcacacatgcgcgcacatgtgcacacacacacacaca
cataacctgctagtccctgacccctacatttttctctttttttgtttttt
ttaagggttggggatgttctttgatgatgatgatgatgacgatgacgacg
atgatgatgatttttgatagtatgtagactaggctagccttgaacaccta
gctatccggttgcctctgtctccagagtgctggaattcaaggtgaacacc
accacactgggcttgctgtttggattttgtttgtttgtttgtttgtttgt
ttgtttgatccaagggtctcacttatgtagcccaggcttaatctcaaatt
caaaattcctatcttctgaagtactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_75582025_75582329
seq2: B6Ng01-305L12.b_53_357 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACAGAACTGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACAGAACTGTCTC  50

seq1  TCACACAGAAAATTATCTCTCACACACAGAATCTTCTCTCACACACACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGAAAATTATCTCTCACACACAGAATCTTCTCTCACACACACTC  100

seq1  AGAACTGTCTCTCATACAGAGATTCTTTTCTCTCTCACAGAATTCTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTCTCTCATACAGAGATTCTTTTCTCTCTCACAGAATTCTCTTC  150

seq1  CTCTCACAAGATTGTCTCTCACAGACAGAACTGTCTCTCACAGGCAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACAAGATTGTCTCTCACAGACAGAACTGTCTCTCACAGGCAGAAT  200

seq1  TGTCTCTCTCACACAGAAAATTCTCTCTCACACACAGAATTCTCTCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCACACAGAAAATTCTCTCTCACACACAGAATTCTCTCACAT  250

seq1  AAGAGAATTCTCTCCCTCACAGACTTTTTTCTAACAGAACTCCTTCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATTCTCTCCCTCACAGACTTTTTTCTAACAGAACTCCTTCTCAC  300

seq1  ACACA  305
      |||||
seq2  ACACA  305

seq1: chr18_75479102_75480023
seq2: B6Ng01-305L12.g_68_994

seq1  GAATTCCAAGACTATCACACACAGTTTCCCCCACCTCCACCCCACCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACTATCACACACAGTTTCCCCCACCTCCACCCCACCCCCA  50

seq1  CCCCGGCCTGGAAGCCAGGCTTGTTACATCATGTTTCAGAGCCCTGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGCCTGGAAGCCAGGCTTGTTACATCATGTTTCAGAGCCCTGAGTC  100

seq1  ACTTCGGATGTCTCTGGCTCTGGCCACAGAAAGGCAAGAAGCCCACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGGATGTCTCTGGCTCTGGCCACAGAAAGGCAAGAAGCCCACAGGA  150

seq1  GAGAAGCCGTGAGCCCAGCCAGTCTCCCACAGACCCACTCAGCAGCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCGTGAGCCCAGCCAGTCTCCCACAGACCCACTCAGCAGCTCCA  200

seq1  TGTACAGGACCAAGCTATTTTAGGGGATAAGATCAAATGGGGGGGTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGACCAAGCTATTTTAGGGGATAAGATCAAATGGGGGGGTACCA  250

seq1  GTTGCCCCAGCTACTTTTGACTCTGTGCTCGGGGCTATTTCTGTGAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCCAGCTACTTTTGACTCTGTGCTCGGGGCTATTTCTGTGAGGGC  300

seq1  ACAGGCTGGTGACACCCCACGTCACCAAGCACTCCGGGTCTGAAATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGGTGACACCCCACGTCACCAAGCACTCCGGGTCTGAAATTAAA  350

seq1  TGTGTCTGCCTAGAAGAGTGAGTGTGAATTCCTATAGGATAGATGGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGCCTAGAAGAGTGAGTGTGAATTCCTATAGGATAGATGGTTGC  400

seq1  CTGGCAACACAGTGTCAAGGCCAAAACATAAGCCAGGGCAGGATGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAACACAGTGTCAAGGCCAAAACATAAGCCAGGGCAGGATGGGTGA  450

seq1  CAGAAACACTCAGGTCTGCAGTGCCAAGTCAAGCCTGTGACAGTCTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACTCAGGTCTGCAGTGCCAAGTCAAGCCTGTGACAGTCTCAAG  500

seq1  AGTCTGCAGAAATTAATGTTTGCTCTGGGCAGCTGTGTCTCTAGCATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCAGAAATTAATGTTTGCTCTGGGCAGCTGTGTCTCTAGCATACA  550

seq1  CATACATACTTGCGCACACATGCGCGCACATGTGCACACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACTTGCGCACACATGCGCGCACATGTGCACACACACACACACA  600

seq1  CATAACCTGCTAGTCCCTGACCCCTACATTTTTCTCTTTTTTTGTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCTGCTAGTCCCTGACCCCTACATTTTTCTCTTTTTTTGTTTTTT  650

seq1  TTAAGGGTTGGGGATGTTCTTTGATGATGATGATGATGACGATGACGACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTTGGGGATGTTCTTTGATGATGATGATGATGACGATGACGACG  700

seq1  ATGATGATGATTTTTGATAGTATGTAGACTAGGCTAGCCTTGAACACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATGATTTTTGATAGTATGTAGACTAGGCTAGCCTTGAACACCTA  750

seq1  GCTATCCGGTTGCCTCTGTCTCCAGAGTGCTGGAATTCAAGGTGAACACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCGGTTGCCTCTGTCTCCAGAGTGCTGGAATTCAAGGTGAACACC  800

seq1  ACCACACTGGGCTTGCTGTTTGGATTTTGTTTGTTTGTTTGTTTGTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTGGGCTTGCTGTTTGGATTTTGTTTGTTTGTTTGTTTGTTTGT  850

seq1  TTGTTTGATCC-AGGGTCTCAC-TATGTAGCCCAGGC-TGATCTC-AACT  896
      ||||||||||| |||||||||| |||||||||||||| | ||||| || |
seq2  TTGTTTGATCCAAGGGTCTCACTTATGTAGCCCAGGCTTAATCTCAAATT  900

seq1  CAAAATTCCTATC-TCTGAAGTACTAA  922
      ||||||||||||| |||||||||||||
seq2  CAAAATTCCTATCTTCTGAAGTACTAA  927