BAC Information

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BAC

Clone NameB6Ng01-306D04
Chromosome18 (Build37)
Map Location 70,159,285 - 70,279,940
singlet/doubletdoublet
Overlap geneRab27b
Upstream geneLOC100043380, EG225681, Tcf4, Ccdc68
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306D04.bB6Ng01-306D04.g
ACCGA099298GA099299
length2261,089
definitionB6Ng01-306D04.b B6Ng01-306D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,279,715 - 70,279,940)(70,159,285 - 70,160,364)
sequence
tgacattcttccttctggcaaaatcagtcttgaggggtggtttggtgctt
agcttgaaaggctcctgctggaaaggaaatgcatcccaggttcaaagggg
agcgccactcttcaagggaaagtgagcactttcctatgcaaagcttgaaa
ggaaaaaagaagccaaggcagtcttttccttttctggttgttgttgttgt
tgtttgtttgtttgtttggttggttg

gaattcaaactcaagccctgcataaaataggttgtggtggtacatgtttg
cagtcccggcactgggagctcaagtcagaaggatcagaagttccagacca
tcttgggctatgtagggagtttgaggccagcctgggatagaaaagattct
gtttctagaaaacaaactgaatctaaaacaaaatcacagaagaaaacaat
acagcatgaatgtccagagtggaacatgatgataaatgagtggaagggtc
atggtgcttataattcatagcagtagcctttatgaactatggcgttcagt
gggatttagaggaagattaactggtgtgcattgttacagcacagcaagaa
tccaaacgaggtgggaaccagggaagcactgcatgaggactcacttccca
cttacagtatgaagccattaaccacttgccaagtatatgacctaacctgt
ccctgactggcagccaatttacactttgttcattgcacacaacctgtctg
gggcaacaaggctgccttcacgtccagatctaatcgagagtgagcagtgt
cggctaccagggaattgttttactgtggcccacattgcctctgccctata
aatgtagaatggtggtcacactgtgacatttgacatatttaccacagaaa
atgaatacaaagcctggccagtggaagaaaaattaatttagtgttgccag
tatgctgtttgacctattaaaatatgaattaaatggtttaagtttctctt
gaaagcattaataattggttctcactggtatttatttatataaatttata
tatgtctaactcaaatgtgtttggttcacttctctttttattaccacatt
gttctctgagtcctaaaatgatcgacatagatgctctttccctgtcatgg
taaacacagcagcaagcagaaagggaaagaaagcccttggtaaggtttcc
tttttctaagaaacgggaatagaaatttatctgggaaagggattaagtag
ctgacaagtttacaaaaacattgttccatttctgtttctagactagtcat
tcttgttcatgtttctactgatcttaaaaaggcgaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70279715_70279940
seq2: B6Ng01-306D04.b_51_276 (reverse)

seq1  CAACCAACCAAACAAACAAACAAACAACAACAACAACAACCAGAAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCAAACAAACAAACAAACAACAACAACAACAACCAGAAAAGGA  50

seq1  AAAGACTGCCTTGGCTTCTTTTTTCCTTTCAAGCTTTGCATAGGAAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGCCTTGGCTTCTTTTTTCCTTTCAAGCTTTGCATAGGAAAGTG  100

seq1  CTCACTTTCCCTTGAAGAGTGGCGCTCCCCTTTGAACCTGGGATGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTCCCTTGAAGAGTGGCGCTCCCCTTTGAACCTGGGATGCATTT  150

seq1  CCTTTCCAGCAGGAGCCTTTCAAGCTAAGCACCAAACCACCCCTCAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAGCAGGAGCCTTTCAAGCTAAGCACCAAACCACCCCTCAAGAC  200

seq1  TGATTTTGCCAGAAGGAAGAATGTCA  226
      ||||||||||||||||||||||||||
seq2  TGATTTTGCCAGAAGGAAGAATGTCA  226


seq1: chr18_70159285_70160364
seq2: B6Ng01-306D04.g_66_1154

seq1  GAATTCAAACTCAAGCCCTGCATAAAATAGGTTGTGGTGGTACATGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTCAAGCCCTGCATAAAATAGGTTGTGGTGGTACATGTTTG  50

seq1  CAGTCCCGGCACTGGGAGCTCAAGTCAGAAGGATCAGAAGTTCCAGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCGGCACTGGGAGCTCAAGTCAGAAGGATCAGAAGTTCCAGACCA  100

seq1  TCTTGGGCTATGTAGGGAGTTTGAGGCCAGCCTGGGATAGAAAAGATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGCTATGTAGGGAGTTTGAGGCCAGCCTGGGATAGAAAAGATTCT  150

seq1  GTTTCTAGAAAACAAACTGAATCTAAAACAAAATCACAGAAGAAAACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGAAAACAAACTGAATCTAAAACAAAATCACAGAAGAAAACAAT  200

seq1  ACAGCATGAATGTCCAGAGTGGAACATGATGATAAATGAGTGGAAGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGAATGTCCAGAGTGGAACATGATGATAAATGAGTGGAAGGGTC  250

seq1  ATGGTGCTTATAATTCATAGCAGTAGCCTTTATGAACTATGGCGTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTTATAATTCATAGCAGTAGCCTTTATGAACTATGGCGTTCAGT  300

seq1  GGGATTTAGAGGAAGATTAACTGGTGTGCATTGTTACAGCACAGCAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTAGAGGAAGATTAACTGGTGTGCATTGTTACAGCACAGCAAGAA  350

seq1  TCCAAACGAGGTGGGAACCAGGGAAGCACTGCATGAGGACTCACTTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACGAGGTGGGAACCAGGGAAGCACTGCATGAGGACTCACTTCCCA  400

seq1  CTTACAGTATGAAGCCATTAACCACTTGCCAAGTATATGACCTAACCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTATGAAGCCATTAACCACTTGCCAAGTATATGACCTAACCTGT  450

seq1  CCCTGACTGGCAGCCAATTTACACTTTGTTCATTGCACACAACCTGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTGGCAGCCAATTTACACTTTGTTCATTGCACACAACCTGTCTG  500

seq1  GGGCAACAAGGCTGCCTTCACGTCCAGATCTAATCGAGAGTGAGCAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACAAGGCTGCCTTCACGTCCAGATCTAATCGAGAGTGAGCAGTGT  550

seq1  CGGCTACCAGGGAATTGTTTTACTGTGGCCCACATTGCCTCTGCCCTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTACCAGGGAATTGTTTTACTGTGGCCCACATTGCCTCTGCCCTATA  600

seq1  AATGTAGAATGGTGGTCACACTGTGACATTTGACATATTTACCACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGAATGGTGGTCACACTGTGACATTTGACATATTTACCACAGAAA  650

seq1  ATGAATACAAAGCCTGGCCAGTGGAAGAAAAATTAATTTAGTGTTGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACAAAGCCTGGCCAGTGGAAGAAAAATTAATTTAGTGTTGCCAG  700

seq1  TATGCTGTTTGACCTATTAAAATATGAATTAAATGGTTTAAGTTTCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTTTGACCTATTAAAATATGAATTAAATGGTTTAAGTTTCTCTT  750

seq1  GAAAGCATTAATAATTGGTTCTCACTGGTATTTATTTATATAAATTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATTAATAATTGGTTCTCACTGGTATTTATTTATATAAATTTATA  800

seq1  TATGTCTAACTCAAATGTGTTTGGTTCACTTCTCTTTTTATTACCACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTAACTCAAATGTGTTTGGTTCACTTCTCTTTTTATTACCACATT  850

seq1  GTTCTCTGAGTCCTAAAATGATCGACATAGATGCTCTTTCCCTGTCATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGAGTCCTAAAATGATCGACATAGATGCTCTTTCCCTGTCATGG  900

seq1  TAAACACAGCAGCAAGCAGAAAGGGAAAGAAAG-CCTTGGTAAGGTTTCC  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAACACAGCAGCAAGCAGAAAGGGAAAGAAAGCCCTTGGTAAGGTTTCC  950

seq1  -TTTTCTAAGAAACGGG-ATAGAAATTTATCTGG--AAAGGATTAAGTAG  995
       |||||||||||||||| ||||||||||||||||  || |||||||||||
seq2  TTTTTCTAAGAAACGGGAATAGAAATTTATCTGGGAAAGGGATTAAGTAG  1000

seq1  CTGACAAGTTTACAAAAACATTG-TCCATTTCTGTTCTAAGACTAGTCA-  1043
      ||||||||||||||||||||||| ||||||||||||   |||||||||| 
seq2  CTGACAAGTTTACAAAAACATTGTTCCATTTCTGTTTCTAGACTAGTCAT  1050

seq1  TCTTG-TCATTGTTCTACTGATC-TAAAAAGGCGAAAAA  1080
      ||||| ||||  ||||||||||| |||||||||||||||
seq2  TCTTGTTCATGTTTCTACTGATCTTAAAAAGGCGAAAAA  1089


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