BAC Information

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BAC

Clone NameB6Ng01-306G14
Chromosome18 (Build37)
Map Location 45,757,809 - 45,865,182
singlet/doubletdoublet
Overlap geneKcnn2
Upstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306G14.bB6Ng01-306G14.g
ACCGA099458GA099459
length1,1571,100
definitionB6Ng01-306G14.b B6Ng01-306G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,864,021 - 45,865,182)(45,757,809 - 45,758,926)
sequence
gaattcacactgtagtatcctctgccaatgaagataagttaaatgctgta
tgttgtttactttgcttgttcctataacaaaattcttggcaaagcagctt
aaaagaaataaggtttacttttgcttagagttttaaagatttcagtttgt
cacacagtggggaaggcaatgctgagcagtttcctttatggtgtgggggg
catgaaattatggcttacttgttggcagccaggatgcaatgacaggctag
aacaggcccaagaaccacacagtcacactattgatactagccattgcagg
gtgcaggaccagtttgcagcattaattgctcttgcagtgttacaaccaat
atatccaacatccaaggaagcaagaattgcatctgcgcacagttccaggg
aggtttcagtttgtcaaagcaaggaaggcaaagcaggtgactccatccaa
ggaacagaagcatccagtgaagccatgttttggcggagaggaacatggaa
ctggactgaaacaaggcttaggttgtcaccttcaaagacacttctccaga
tacccgcttctaccagctatgtcctccttcctaatggctccatagtgtct
aaaatactgctcccatctggggaccaagcattaaaaatgtgagtctatgg
aatatactttagaatcgaaccataacaaactattttcaacataccaacac
gaactactttcaactactaaaacataatgaatagtttcaaaattattcca
ttcattggagttgaggttaaaattgtggtgacatttatattagtctttat
atttcatccactcattcctggaatgaaaaagaataagaattatagttcaa
ttactaaattaaataatacataggaacaataaaatttgaaaaagtctcca
ttcaatataagtaaattatttatatctgatttataaaaagtgttattgtg
cttgtactttcgctggccaatatgatgataaattccgcttttctgttcta
ctactgcaaacgttttttttttatgcattatgctagatgctatttggact
tttgacaagcacattatgccaactgaaatgcaatggtggtcaatgaaatt
catttcctagttctcattagaatatctcggaaattcttatgtgatggatt
gaaattt
gaattctaagagggaaagtgaaatcttgtttggctgcaacttctggggca
cattcttggtatatgctaattaacactgaagttttacagactgggatggc
ttgcagtcttttgcagtttaagaggtaataaaatggaatagtcctgcatt
caatatattctctttagaccaaagagtttagtaatttggaagagagggtc
aaattgagggtagggaaaagagctagggactctggtgccagtggtcccaa
gcaaaagccacactgtaatactgtaataaattggaggggttgggagtttt
tcagccattagggaaacggtcatatatttaggatatcaacaccaaataac
ttcatgttcaggtttattccattggctttatctataagcatatttaagtt
aattaactcatatgcattagttgagagggaaatcttttgtaaaataaatc
tgaagtagtttcattgtgaaaggggtatagttaaaaaagggaagagtgag
cttgggcgtggtatcttctggaaatgccctggaaatgggttgactaggtt
cgcatactaaagttcaacacaaaataattgatgtggtatttgcttttcta
attatcaaacacaatctgagaatgagagatttccatttcaatgtgttcac
tatgttaataattatgttataatattgcccgatggagtatttatttatat
tcctatctgtgagcaacaattttgctaatattcatttacaatacattttc
aaaacttttgttcaaaacttttgtttgtaatcaaatgaattctggagtat
atgtgaatctgtattcttatatagcatctggtggaatattaccggtaaac
catactaaaaaaaaaatggcacagtgtaatttttacataagtcgctgtct
tctgatatcagaagtatattgaatgggttgtttggggaatctcctatcaa
tagaataccttctgtcagagacacaacttagtagaatttcctgaagtaaa
gaacacatgtttatagtagatagtcatctttagccctactcaagatgcat
atggaatctactctctgagattagtgcctggatcaggtcatttatgtatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45864021_45865182
seq2: B6Ng01-306G14.b_47_1203 (reverse)

seq1  AAATTTCTACTCATCACATAAGATTTTTCTGGAGAATAATCCTAAAATGA  50
      ||||||| |  |||||||||||| ||| |  ||| ||| ||    |||||
seq2  AAATTTCAATCCATCACATAAGAATTTCC--GAG-ATATTC---TAATGA  44

seq1  GAACTAAGAAATG-ATTTCATGGACCACATTTGCATTTAAGTTTGCAATT  99
      |||||| |||||| ||||||| ||||||  |||||||| |||| || || 
seq2  GAACTAGGAAATGAATTTCATTGACCACCATTGCATTTCAGTTGGC-ATA  93

seq1  ATGTGCTTGTCAAAAAGTCCAAATAGCATCTTAGCATAATGCAT---AAA  146
      ||||||||||| |||||||||||||||||| |||||||||||||   |||
seq2  ATGTGCTTGTC-AAAAGTCCAAATAGCATC-TAGCATAATGCATAAAAAA  141

seq1  AAAACGTTTGCAGTAGTTAGAACAGAAAAGCGGAATTTATCCATCATA-T  195
      |||||||||||||||| ||||||||||||||||||||||| ||||||| |
seq2  AAAACGTTTGCAGTAG-TAGAACAGAAAAGCGGAATTTAT-CATCATATT  189

seq1  GGCCAGCGAAAGTACAAGCACAATAACAC-TTTTATAAATCAGATATAAA  244
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCCAGCGAAAGTACAAGCACAATAACACTTTTTATAAATCAGATATAAA  239

seq1  TAATTTACTTATATTGAATGGAGACTTTTTCAAATTTTATTGTTCCTATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACTTATATTGAATGGAGACTTTTTCAAATTTTATTGTTCCTATG  289

seq1  TATTATTTAA-TTAGTAATTGAACTATAATTTCTTATTCTTTTTCATTCC  343
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TATTATTTAATTTAGTAATTGAACTATAA-TTCTTATTCTTTTTCATTCC  338

seq1  AGGAATGAGTGGATGAAATATAAAGACTAATATAAATGTCACCACAATTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAGTGGATGAAATATAAAGACTAATATAAATGTCACCACAATTT  388

seq1  TAACCTCAACTCCAATGAATGGAATAATTTTGAAACTATTCATTATGTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCAACTCCAATGAATGGAATAATTTTGAAACTATTCATTATGTTT  438

seq1  TAGTAGTTGAAAGTAGTTCGTGTTGGTATGTTGAAAATAGTTTGTTATGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTTGAAAGTAGTTCGTGTTGGTATGTTGAAAATAGTTTGTTATGG  488

seq1  TTCGATTCTAAAGTATATTCCATAGACTCACATTTTTAATGCTTGGTCCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATTCTAAAGTATATTCCATAGACTCACATTTTTAATGCTTGGTCCC  538

seq1  CAGATGGGAGCAGTATTTTAGACACTATGGAGCCATTAGGAAGGAGGACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGAGCAGTATTTTAGACACTATGGAGCCATTAGGAAGGAGGACA  588

seq1  TAGCTGGTAGAAGCGGGTATCTGGAGAAGTGTCTTTGAAGGTGACAACCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTAGAAGCGGGTATCTGGAGAAGTGTCTTTGAAGGTGACAACCT  638

seq1  AAGCCTTGTTTCAGTCCAGTTCCATGTTCCTCTCCGCCAAAACATGGCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGTTTCAGTCCAGTTCCATGTTCCTCTCCGCCAAAACATGGCTT  688

seq1  CACTGGATGCTTCTGTTCCTTGGATGGAGTCACCTGCTTTGCCTTCCTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATGCTTCTGTTCCTTGGATGGAGTCACCTGCTTTGCCTTCCTTG  738

seq1  CTTTGACAAACTGAAACCTCCCTGGAACTGTGCGCAGATGCAATTCTTGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAAACTGAAACCTCCCTGGAACTGTGCGCAGATGCAATTCTTGC  788

seq1  TTCCTTGGATGTTGGATATATTGGTTGTAACACTGCAAGAGCAATTAATG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGATGTTGGATATATTGGTTGTAACACTGCAAGAGCAATTAATG  838

seq1  CTGCAAACTGGTCCTGCACCCTGCAATGGCTAGTATCAATAGTGTGACTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACTGGTCCTGCACCCTGCAATGGCTAGTATCAATAGTGTGACTG  888

seq1  TGTGGTTCTTGGGCCTGTTCTAGCCTGTCATTGCATCCTGGCTGCCAACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCTTGGGCCTGTTCTAGCCTGTCATTGCATCCTGGCTGCCAACA  938

seq1  AGTAAGCCATAATTTCATGCCCCCCACACCATAAAGGAAACTGCTCAGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCCATAATTTCATGCCCCCCACACCATAAAGGAAACTGCTCAGCA  988

seq1  TTGCCTTCCCCACTGTGTGACAAACTGAAATCTTTAAAACTCTAAGCAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCCCCACTGTGTGACAAACTGAAATCTTTAAAACTCTAAGCAAA  1038

seq1  AGTAAACCTTATTTCTTTTAAGCTGCTTTGCCAAGAATTTTGTTATAGGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCTTATTTCTTTTAAGCTGCTTTGCCAAGAATTTTGTTATAGGA  1088

seq1  ACAAGCAAAGTAAACAACATACAGCATTTAACTTATCTTCATTGGCAGAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAAGTAAACAACATACAGCATTTAACTTATCTTCATTGGCAGAG  1138

seq1  GATACTACAGTGTGAATTC  1162
      |||||||||||||||||||
seq2  GATACTACAGTGTGAATTC  1157

seq1: chr18_45757809_45758926
seq2: B6Ng01-306G14.g_66_1165

seq1  GAATTCTAAGAGGGAAAGTGAAATCTTGTTTGGCTGCAACTTCTGGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAGGGAAAGTGAAATCTTGTTTGGCTGCAACTTCTGGGGCA  50

seq1  CATTCTTGGTATATGCTAATTAACACTGAAGTTTTACAGACTGGGATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGGTATATGCTAATTAACACTGAAGTTTTACAGACTGGGATGGC  100

seq1  TTGCAGTCTTTTGCAGTTTAAGAGGTAATAAAATGGAATAGTCCTGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTCTTTTGCAGTTTAAGAGGTAATAAAATGGAATAGTCCTGCATT  150

seq1  CAATATATTCTCTTTAGACCAAAGAGTTTAGTAATTTGGAAGAGAGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATTCTCTTTAGACCAAAGAGTTTAGTAATTTGGAAGAGAGGGTC  200

seq1  AAATTGAGGGTAGGGAAAAGAGCTAGGGACTCTGGTGCCAGTGGTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGGGTAGGGAAAAGAGCTAGGGACTCTGGTGCCAGTGGTCCCAA  250

seq1  GCAAAAGCCACACTGTAATACTGTAATAAATTGGAGGGGTTGGGAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGCCACACTGTAATACTGTAATAAATTGGAGGGGTTGGGAGTTTT  300

seq1  TCAGCCATTAGGGAAACGGTCATATATTTAGGATATCAACACCAAATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCATTAGGGAAACGGTCATATATTTAGGATATCAACACCAAATAAC  350

seq1  TTCATGTTCAGGTTTATTCCATTGGCTTTATCTATAAGCATATTTAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCAGGTTTATTCCATTGGCTTTATCTATAAGCATATTTAAGTT  400

seq1  AATTAACTCATATGCATTAGTTGAGAGGGAAATCTTTTGTAAAATAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTCATATGCATTAGTTGAGAGGGAAATCTTTTGTAAAATAAATC  450

seq1  TGAAGTAGTTTCATTGTGAAAGGGGTATAGTTAAAAAAGGGAAGAGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGTTTCATTGTGAAAGGGGTATAGTTAAAAAAGGGAAGAGTGAG  500

seq1  CTTGGGCGTGGTATCTTCTGGAAATGCCCTGGAAATGGGTTGACTAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCGTGGTATCTTCTGGAAATGCCCTGGAAATGGGTTGACTAGGTT  550

seq1  CGCATACTAAAGTTCAACACAAAATAATTGATGTGGTATTTGCTTTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATACTAAAGTTCAACACAAAATAATTGATGTGGTATTTGCTTTTCTA  600

seq1  ATTATCAAACACAATCTGAGAATGAGAGATTTCCATTTCAATGTGTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAACACAATCTGAGAATGAGAGATTTCCATTTCAATGTGTTCAC  650

seq1  TATGTTAATAATTATGTTATAATATTGCCCGATGGAGTATTTATTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAATAATTATGTTATAATATTGCCCGATGGAGTATTTATTTATAT  700

seq1  TCCTATCTGTGAGCAACAATTTTGCTAATATTCATTTACAATACATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCTGTGAGCAACAATTTTGCTAATATTCATTTACAATACATTTTC  750

seq1  AAAACTTTTGTTCAAAACTTTTGTTTGTAATCAAATGAATTCTGGAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTTGTTCAAAACTTTTGTTTGTAATCAAATGAATTCTGGAGTAT  800

seq1  ATGTGAATCTGTATTCTTATATAGCATCTGGTGGAATATTACCGGTAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATCTGTATTCTTATATAGCATCTGGTGGAATATTACCGGTAAAC  850

seq1  CATACTAAAAAAAAAATGGCACAGTGTAATTTTTACATAAGTCGCTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAAAAAAAAAATGGCACAGTGTAATTTTTACATAAGTCGCTGTCT  900

seq1  TCTGATATCAGAAGTATATTGAATGGGTTGTTTGGGGAATCTCCTATCAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTGATATCAGAAGTATATTGAATGGGTTGTTTGGGGAATCTCCTATC-A  949

seq1  ATAGAATACCTTCTGGTCCAGAGACACAACCTAGTAGAATTTCCTGAAGT  1000
      |||||||||||||||   |||||||||||| |||||||||||||||||||
seq2  ATAGAATACCTTCTG--TCAGAGACACAACTTAGTAGAATTTCCTGAAGT  997

seq1  AAAAGAACACAATGTTTTATAATTAGATAGTCCATCCTTTTAGCCCTAAC  1050
       ||||||||| ||| ||||| | |||||||| ||||  ||||||||| ||
seq2  -AAAGAACAC-ATG-TTTAT-AGTAGATAGT-CATC--TTTAGCCCT-AC  1039

seq1  TCAAAGATAGCATATGGGATTCTACTCTCTGAGGATTATGTGCTCTGAAT  1100
      || ||||| |||||| ||| |||||||||||| ||||| |||| ||| ||
seq2  TC-AAGAT-GCATAT-GGAATCTACTCTCTGA-GATTA-GTGC-CTGGAT  1083

seq1  CATGTTCATTTATGTATT  1118
      || | |||||||||||||
seq2  CA-GGTCATTTATGTATT  1100