BAC Information

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BAC

Clone NameB6Ng01-306H17
Chromosome18 (Build37)
Map Location 61,158,864 - 61,287,850
singlet/doubletdoublet
Overlap geneSlc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a
Downstream geneSlc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306H17.bB6Ng01-306H17.g
ACCGA099505GA099506
length1,132686
definitionB6Ng01-306H17.b B6Ng01-306H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,286,709 - 61,287,850)(61,158,864 - 61,159,552)
sequence
gaattcagcttttcccccacccagactcacgtttttagaagcaaggaagg
ccatgccctgagccacttggctggagaagtggagcaggtcccagagctcc
aggggccggctggcctctttgtccagatctgtagaaggcaaaggcatcgg
ggcaaccctgtcacaccttgctgttcctcaggcccagttcccggccccta
ggcccattcacccttctctcccctcatcccggtacctccgcaccttgctt
aaagaaggagtcacttgaagaagtcgagacaggcctcatctccacgtagg
tgtctacaccctgactggagaagccactgtccctgggtaggaaagagaag
tgggaaagatcccatcactgcctagcccaggcattgccctccagctgcct
tgtggattcccttagtcactcagcagaggggaagaaacctaaaggtcagc
tgagcatcactctctgataagggaggccctatgctacattcgacttgagc
aatcactgtgccacgtttagccttcccagacacaccctttagccagaggc
acccctttctgtcactaggcggctctgcctgctcaaagttcttccttgct
cctaatgccagcatgctcctgggattttcttctgatcttcatcctcaaag
gcaggaagaccgttatctctagctgccccgctgggatgtgagtcagtccc
aggccccttccctgatctctctgcacagcattgcacaagttagcctctcg
ttcaaagttcctcgaggagggtggcactgactgccaagcctgagaacctg
agctcaatcccagggggtcgtcgcgtggaaagagagaggcccagcttatc
cacgtgcattacagataaataagtgcaaaatcaaaaagtttaaaatcgca
caagaaaggggctggagagatgcctcagcaggtgagagtacttgctactc
attcagagggaactgggtttggctcccagcacccacatggtggctcacac
ctttaccccagtcctaggtagcagacacatctttggccattgtgagcagc
agacacagtacacaccagaacacacactcatacatggctttttttttttt
ttaattcgctgaaagcttggatattcccatga
gaattccaggctaccatatggctgggggtaccattgtgtgtgtgtgtttg
tgtgtgtgtgtgtgagagagagagagagagagagaaagaaagagagagag
acagacagacatacagagagagacagagagagacagaaacagagacagag
agacagagacagagacagagagacacgctgtgtggaggcagacatgtagg
gtgcagaaggggcaggggactgtcttataggtcatttcctgccattgcag
atctctggctagcactactttaataatggatcacagcattcctaaattct
caacagtaagctctcgtgagctgggactagctggctttagcaccctctgc
taggtgtgcgggtcatagggagggtgcctaggctctatctggtgggcttg
agccactaggcttgcttgagctccgttcactcaccatgagtctctggtca
ttggaggactccagactcataagggcccaagtgaagtctctatgtacaaa
gggtgccctgggcagctcagagagaggccaggatgtccttatggtcacat
agcatatctggtggcccacagtgggttactacctatctctttcaaggcct
gttgctcctatgccaattacgttctccctgtctggtttttttgtttgttg
aaacagagtttctctgtgtacccttggttgtcctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_61286709_61287850
seq2: B6Ng01-306H17.b_44_1175 (reverse)

seq1  TCATGGGGAATATTCAAACCTTTCCAAGCGATTTAAAAAAAAAAAAAAAG  50
      |||| ||||||| || || |||||  ||||| ||||||||||||||||  
seq2  TCAT-GGGAATA-TCCAAGCTTTC--AGCGAATTAAAAAAAAAAAAAAGC  46

seq1  CATGTATGAGTGTGTG-TCT-GTGTGTACCTGTGTTCCTGCTGCTCACAA  98
      |||||||||||||||| ||| ||||||| ||||||  |||||||||||||
seq2  CATGTATGAGTGTGTGTTCTGGTGTGTA-CTGTGT--CTGCTGCTCACAA  93

seq1  TGGGCCAAAAGATGGTGTCTGCTACCCTAGGACTGGGGTTAAAGGTGTGA  148
      |||  | |||||| |||||||||| ||||||||||||| |||||||||||
seq2  TGG--CCAAAGAT-GTGTCTGCTA-CCTAGGACTGGGG-TAAAGGTGTGA  138

seq1  GCCACCATGTGGGTGCTGGGAGCCAAACCCAGTTCCCTCTGAATGAGTAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGTGGGTGCTGGGAGCCAAACCCAGTTCCCTCTGAATGAGTAG  188

seq1  CAAGTACTCTCACCTGCTGAGGCATCTCTCCAGCCCCCTTCTTGTGCGAT  248
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAGTACTCTCACCTGCTGAGGCATCTCTCCAGCCCCTTTCTTGTGCGAT  238

seq1  TTTAAACTTTTTGATTTTGCACTTATTTATCTGTAATGCACGTGGATAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTTTTGATTTTGCACTTATTTATCTGTAATGCACGTGGATAAG  288

seq1  CTGGGCCTCTCTCTTTCCACGCGACGACCCCCTGGGATTGAGCTCAGGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTCTCTCTTTCCACGCGACGACCCCCTGGGATTGAGCTCAGGTT  338

seq1  CTCAGGCTTGGCAGTCAGTGCCACCCTCCTCGAGGAACTTTGAACGAGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTTGGCAGTCAGTGCCACCCTCCTCGAGGAACTTTGAACGAGAG  388

seq1  GCTAACTTGTGCAATGCTGTGCAGAGAGATCAGGGAAGGGGCCTGGGACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTTGTGCAATGCTGTGCAGAGAGATCAGGGAAGGGGCCTGGGACT  438

seq1  GACTCACATCCCAGCGGGGCAGCTAGAGATAACGGTCTTCCTGCCTTTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACATCCCAGCGGGGCAGCTAGAGATAACGGTCTTCCTGCCTTTGA  488

seq1  GGATGAAGATCAGAAGAAAATCCCAGGAGCATGCTGGCATTAGGAGCAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGATCAGAAGAAAATCCCAGGAGCATGCTGGCATTAGGAGCAAG  538

seq1  GAAGAACTTTGAGCAGGCAGAGCCGCCTAGTGACAGAAAGGGGTGCCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTTTGAGCAGGCAGAGCCGCCTAGTGACAGAAAGGGGTGCCTCT  588

seq1  GGCTAAAGGGTGTGTCTGGGAAGGCTAAACGTGGCACAGTGATTGCTCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGGGTGTGTCTGGGAAGGCTAAACGTGGCACAGTGATTGCTCAA  638

seq1  GTCGAATGTAGCATAGGGCCTCCCTTATCAGAGAGTGATGCTCAGCTGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAATGTAGCATAGGGCCTCCCTTATCAGAGAGTGATGCTCAGCTGAC  688

seq1  CTTTAGGTTTCTTCCCCTCTGCTGAGTGACTAAGGGAATCCACAAGGCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTTTCTTCCCCTCTGCTGAGTGACTAAGGGAATCCACAAGGCAG  738

seq1  CTGGAGGGCAATGCCTGGGCTAGGCAGTGATGGGATCTTTCCCACTTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGGCAATGCCTGGGCTAGGCAGTGATGGGATCTTTCCCACTTCTC  788

seq1  TTTCCTACCCAGGGACAGTGGCTTCTCCAGTCAGGGTGTAGACACCTACG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACCCAGGGACAGTGGCTTCTCCAGTCAGGGTGTAGACACCTACG  838

seq1  TGGAGATGAGGCCTGTCTCGACTTCTTCAAGTGACTCCTTCTTTAAGCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGAGGCCTGTCTCGACTTCTTCAAGTGACTCCTTCTTTAAGCAA  888

seq1  GGTGCGGAGGTACCGGGATGAGGGGAGAGAAGGGTGAATGGGCCTAGGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGGAGGTACCGGGATGAGGGGAGAGAAGGGTGAATGGGCCTAGGGG  938

seq1  CCGGGAACTGGGCCTGAGGAACAGCAAGGTGTGACAGGGTTGCCCCGATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAACTGGGCCTGAGGAACAGCAAGGTGTGACAGGGTTGCCCCGATG  988

seq1  CCTTTGCCTTCTACAGATCTGGACAAAGAGGCCAGCCGGCCCCTGGAGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTTCTACAGATCTGGACAAAGAGGCCAGCCGGCCCCTGGAGCT  1038

seq1  CTGGGACCTGCTCCACTTCTCCAGCCAAGTGGCTCAGGGCATGGCCTTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACCTGCTCCACTTCTCCAGCCAAGTGGCTCAGGGCATGGCCTTCC  1088

seq1  TTGCTTCTAAAAACGTGAGTCTGGGTGGGGGAAAAGCTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTAAAAACGTGAGTCTGGGTGGGGGAAAAGCTGAATTC  1132

seq1: chr18_61158864_61159552
seq2: B6Ng01-306H17.g_67_751

seq1  GAATTCCAGGCTACCATATGGCTGGGGGTACCATTGTGTGTGTGTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTACCATATGGCTGGGGGTACCATTGTGTGTGTGTGTTTG  50

seq1  TGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAGAGAGAG  100

seq1  ACAGACAGACAGACAGAGAGAGACAGAGAGAGACAGAAACAGAGACAGAG  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACATACAGAGAGAGACAGAGAGAGACAGAAACAGAGACAGAG  150

seq1  AGACAGAGACAGAGACAGAGAGACACGCTGTGTGGAGGCAGACATGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGACAGAGACAGAGAGACACGCTGTGTGGAGGCAGACATGTAGG  200

seq1  GTGCAGAAGGGGCAGGGGACTGTCTTATAGGTCATTTCCTGCCATTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAGGGGCAGGGGACTGTCTTATAGGTCATTTCCTGCCATTGCAG  250

seq1  ATCTCTGGCTAGCACTACTTTAATAATGGATCACAGCATTCCTAAATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGCTAGCACTACTTTAATAATGGATCACAGCATTCCTAAATTCT  300

seq1  CAACAGTAAGCTCTCGTGAGCTGGGACTAGCTGGCTTTAGCACCCTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAAGCTCTCGTGAGCTGGGACTAGCTGGCTTTAGCACCCTCTGC  350

seq1  TAGGTGTGCGGGTCATAGGGAGGGTGCCTAGGCTCTATCTGGCGGGCTTG  400
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGGTGTGCGGGTCATAGGGAGGGTGCCTAGGCTCTATCTGGTGGGCTTG  400

seq1  AGCCACGAGGCTTGCTTGAGCTCCGTTCACTCACCATGAGTCTCTGGCCA  450
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCCACTAGGCTTGCTTGAGCTCCGTTCACTCACCATGAGTCTCTGGTCA  450

seq1  TTGGAGGACTCCAGACTCATAAGGGCCCAAGTGAAGTCTCTATGTACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGACTCCAGACTCATAAGGGCCCAAGTGAAGTCTCTATGTACAAA  500

seq1  GGGTGCCCTGGGCAGCTCAGAGAGAGGCCAGGATGTCCTTATGGTCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCCTGGGCAGCTCAGAGAGAGGCCAGGATGTCCTTATGGTCACAT  550

seq1  AGCATATCTGGTGGCCCACAGTGGGTTACTACCTATCTCTTTCAAGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATCTGGTGGCCCACAGTGGGTTACTACCTATCTCTTTCAAGGCCT  600

seq1  GTTGCTCCTATGCCAATTACGTTCTCCCTGTCTTGGGTTTTTTTGTTTGT  650
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GTTGCTCCTATGCCAATTACGTTCTCCCTGTCT--GGTTTTTTTGTTTGT  648

seq1  TGAAAACAAGAGTTTCTCTGTGTACCCTTGGTTGTCCTG  689
      |||||   |||||||||||||||||||||||||||||||
seq2  TGAAA--CAGAGTTTCTCTGTGTACCCTTGGTTGTCCTG  685