BAC Information

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BAC

Clone NameB6Ng01-306L09
Chromosome18 (Build37)
Map Location 69,609,808 - 69,767,959
singlet/doubletdoublet
Overlap geneTcf4
Upstream geneLOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306L09.bB6Ng01-306L09.g
ACCGA099670GA099671
length982651
definitionB6Ng01-306L09.b B6Ng01-306L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,609,808 - 69,610,779)(69,767,310 - 69,767,959)
sequence
gaattctctcccagtttatagagcagatatgtttactgtattcttttccc
tgtactcctcttcctgacctaggctacaagaagactatccctgactgggg
tttatcactgccatatcagtcaattaccgaagaaatcttctaattaaatc
acatagagttgagatttctttgattgtttctattggacctcagatcagag
atctgttagacctcacttggaagccattttagaataagggtggggatatg
ggctgggggattttcaggtgttacctactgtatcttcacttgtcacattt
tcaatgagtgtattactaaaaattggtcataatggtcttaaaggatttct
tcatcacttgctagtgaacgcagcatgggaaaaataattacaaagtatag
tctgcaaggtaccttggctaggtgacaggcattgtttaacagctagaaag
ccagcccctggccactgtggtttcctggactccttcctgggacactagta
ctgtatctaccttcatatcatcatgagggaacattatccaaaattgactt
attctgaagttccatatcatttagagaagcaccaaggagctacttccaat
caaaatagataaacgagacacagagtttaaatacattgcatgatctttta
acatagtcttccccatagggaagggtagtaccaatttggaaagtgaatta
tgagttttggataaaatttatcactgcacgaattctgtcctaaggatatg
cacattaaaagggtctgaagaagttaataatatttactacatttctgctt
gcaagttattcacatattctataacttagactgccattgtagttttaaac
cttttcaatttaggcactttagagaactattgggagggttttaaaagata
tttttctcttagtcttcaacctttgacttttcttcttcattcccagcttg
actagggaagctgtaatttttaactgatgatt

gaattcaagatggtggctagttaaagaaagggagcccatgccagggactc
tgatcaaagaacttcaattcagcaatgttcggttttaattgaccactaat
taagctacattagtccaagaacggtctgtatcacttcgactaataaagaa
aagaattaatttaaccccgtgtcagtcagctttagcaaattcatctgaaa
gcaacttctcaaacgacaggcatgaaagaggtgtctagaactgaatgcca
aaagtggtctacgggattcagaggagacaggggacttggttctcaagtgc
gtttgtcactttgctagtgatgtcaccttgcaggtgtaattatcttcatt
acagatacaaagatgtcagtttcactccccgggttgcaaagggttgcttt
aaaattggattcaaaacatggcagccgaccagccaattttaactttcctg
tattcgcgacaaaaatagagtggatttgcaaaatcatgagaattttcaaa
ggcttggaactctcttctgggaaaagtgagttgaggggggtgtggggaaa
aacaactgcaataacaccaccaaaaaaagctcattataattaggaaccac
tagctatgacagccatggcagcagcagcgagagagcgcatgtgttaaagt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69609808_69610779
seq2: B6Ng01-306L09.b_46_1027

seq1  GAATTCTCTCCCAGTTTATAGAGCAGATATGTTTACTGTATTCTTTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCCAGTTTATAGAGCAGATATGTTTACTGTATTCTTTTCCC  50

seq1  TGTACTCCTCTTCCTGACCTAGGCTACAAGAAGACTATCCCTGACTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCTCTTCCTGACCTAGGCTACAAGAAGACTATCCCTGACTGGGG  100

seq1  TTTATCACTGCCATATCAGTCAATTACCGAAGAAATCTTCTAATTAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACTGCCATATCAGTCAATTACCGAAGAAATCTTCTAATTAAATC  150

seq1  ACATAGAGTTGAGATTTCTTTGATTGTTTCTATTGGACCTCAGATCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGTTGAGATTTCTTTGATTGTTTCTATTGGACCTCAGATCAGAG  200

seq1  ATCTGTTAGACCTCACTTGGAAGCCATTTTAGAATAAGGGTGGGGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTAGACCTCACTTGGAAGCCATTTTAGAATAAGGGTGGGGATATG  250

seq1  GGCTGGGGGATTTTCAGGTGTTACCTACTGTATCTTCACTTGTCACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGGATTTTCAGGTGTTACCTACTGTATCTTCACTTGTCACATTT  300

seq1  TCAATGAGTGTATTACTAAAAATTGGTCATAATGGTCTTAAAGGATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAGTGTATTACTAAAAATTGGTCATAATGGTCTTAAAGGATTTCT  350

seq1  TCATCACTTGCTAGTGAACGCAGCATGGGAAAAATAATTACAAAGTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTTGCTAGTGAACGCAGCATGGGAAAAATAATTACAAAGTATAG  400

seq1  TCTGCAAGGTACCTTGGCTAGGTGACAGGCATTGTTTAACAGCTAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGGTACCTTGGCTAGGTGACAGGCATTGTTTAACAGCTAGAAAG  450

seq1  CCAGCCCCTGGCCACTGTGGTTTCCTGGACTCCTTCCTGGGACACTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCTGGCCACTGTGGTTTCCTGGACTCCTTCCTGGGACACTAGTA  500

seq1  CTGTATCTACCTTCATATCATCATGAGGGAACATTATCCAAAATTGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTACCTTCATATCATCATGAGGGAACATTATCCAAAATTGACTT  550

seq1  ATTCTGAAGTTCCATATCATTTAGAGAAGCACCAAGGAGCTACTTCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAGTTCCATATCATTTAGAGAAGCACCAAGGAGCTACTTCCAAT  600

seq1  CAAAATAGATAAACGAGACACAGAGTTTAAATACATTGCATGATCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGATAAACGAGACACAGAGTTTAAATACATTGCATGATCTTTTA  650

seq1  ACATAGTCTTCCCCATAGGGAAGGGTAGTACCAATTTGGAAAGTGAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTCTTCCCCATAGGGAAGGGTAGTACCAATTTGGAAAGTGAATTA  700

seq1  TGAG-TTTGGATAAAA-TTATCACTGCACGAA-TCTGTCCTAAGGATATG  747
      |||| ||||||||||| ||||||||||||||| |||||||||||||||||
seq2  TGAGTTTTGGATAAAATTTATCACTGCACGAATTCTGTCCTAAGGATATG  750

seq1  CACAT--AAAGGGTCTGAAGAAGTTAATAATATTTACTACATTTCTGCTT  795
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAAAGGGTCTGAAGAAGTTAATAATATTTACTACATTTCTGCTT  800

seq1  GCAAGTTATTCACATATTCTATAACTTAGACTG-CAATGTAG-TTAAAAC  843
      ||||||||||||||||||||||||||||||||| || ||||| || ||||
seq2  GCAAGTTATTCACATATTCTATAACTTAGACTGCCATTGTAGTTTTAAAC  850

seq1  CCTTTCAAATTAGGCACTTTAGAGAAC-ATTGGGAGGGTTTTAAAAGATA  892
      | |||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTTCAATTTAGGCACTTTAGAGAACTATTGGGAGGGTTTTAAAAGATA  900

seq1  -TTTTCTCTTAGTCTTCAACCTTTGAACTTTTCTTCATCAATACCAGC-T  940
       |||||||||||||||||||||||| |||||||||| ||| | ||||| |
seq2  TTTTTCTCTTAGTCTTCAACCTTTG-ACTTTTCTTCTTCATTCCCAGCTT  949

seq1  GACCAGGGTAGCTGTAATTTTT-ATTGATGATT  972
      ||| |||| ||||||||||||| | ||||||||
seq2  GACTAGGGAAGCTGTAATTTTTAACTGATGATT  982


seq1: chr18_69767310_69767959
seq2: B6Ng01-306L09.g_67_717 (reverse)

seq1  TACTTTAACACATGCGCTCTCTCGCTGCTGCTGCCATGGCTGTCATAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAACACATGCGCTCTCTCGCTGCTGCTGCCATGGCTGTCATAGCT  50

seq1  TGTGGTTCCTAATTATAATGAGC-TTTTTTGGTGGTGTTATTGCAGTTGT  99
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTGGTTCCTAATTATAATGAGCTTTTTTTGGTGGTGTTATTGCAGTTGT  100

seq1  TTTTCCCCACACCCCCCTCAACTCACTTTTCCCAGAAGAGAGTTCCAAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCACACCCCCCTCAACTCACTTTTCCCAGAAGAGAGTTCCAAGC  150

seq1  CTTTGAAAATTCTCATGATTTTGCAAATCCACTCTATTTTTGTCGCGAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAATTCTCATGATTTTGCAAATCCACTCTATTTTTGTCGCGAAT  200

seq1  ACAGGAAAGTTAAAATTGGCTGGTCGGCTGCCATGTTTTGAATCCAATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAGTTAAAATTGGCTGGTCGGCTGCCATGTTTTGAATCCAATTT  250

seq1  TAAAGCAACCCTTTGCAACCCGGGGAGTGAAACTGACATCTTTGTATCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAACCCTTTGCAACCCGGGGAGTGAAACTGACATCTTTGTATCTG  300

seq1  TAATGAAGATAATTACACCTGCAAGGTGACATCACTAGCAAAGTGACAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGATAATTACACCTGCAAGGTGACATCACTAGCAAAGTGACAAA  350

seq1  CGCACTTGAGAACCAAGTCCCCTGTCTCCTCTGAATCCCGTAGACCACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTTGAGAACCAAGTCCCCTGTCTCCTCTGAATCCCGTAGACCACTT  400

seq1  TTGGCATTCAGTTCTAGACACCTCTTTCATGCCTGTCGTTTGAGAAGTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTCAGTTCTAGACACCTCTTTCATGCCTGTCGTTTGAGAAGTTG  450

seq1  CTTTCAGATGAATTTGCTAAAGCTGACTGACACGGGGTTAAATTAATTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGATGAATTTGCTAAAGCTGACTGACACGGGGTTAAATTAATTCT  500

seq1  TTTCTTTATTAGTCGAAGTGATACAGACCGTTCTTGGACTAATGTAGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTAGTCGAAGTGATACAGACCGTTCTTGGACTAATGTAGCTT  550

seq1  AATTAGTGGTCAATTAAAACCGAACATTGCTGAATTGAAGTTCTTTGATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTGGTCAATTAAAACCGAACATTGCTGAATTGAAGTTCTTTGATC  600

seq1  AGAGTCCCTGGCATGGGCTCCCTTTCTTTAACTAGCCACCATCTTGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCTGGCATGGGCTCCCTTTCTTTAACTAGCCACCATCTTGAATT  650

seq1  C  650
      |
seq2  C  651


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