BAC Information

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BAC

Clone NameB6Ng01-307L24
Chromosome18 (Build37)
Map Location 49,282,065 - 49,399,227
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307L24.bB6Ng01-307L24.g
ACCGA100441GA100442
length1,144914
definitionB6Ng01-307L24.b B6Ng01-307L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,398,086 - 49,399,227)(49,282,065 - 49,282,701)
sequence
gaattctgtctgaggaggggcctcagatacaatcaggaagtggttcatta
cccttataaaattcatagtactattgaaccatgaggcacatttgtcagta
ttatatgccagggtccatccttgggcaaataccatgatgaatcttctccc
tctttaggctgtatatcaccttctagcactctgaaagccaacaatgagtg
gggaattgcttaacctcctttcaactcgctcctctccccaatcctcaatt
aaacccattgattcccaggaagttctcctgtactttcacaccacattcct
tctatctgtcccttccacctcttgtcctcctttggctcacataccctttc
tgttactttggtatctgcaacatactatttaatgcactgataatgttggt
taagatgaaaacagtggggagaattaaagaattctgcaagcttgccggtt
gatacatacctaactattaactgccgatttgattttgaaaccagttttac
attatggtcagtttataatccttagcacatgagtgatagaaatggaggaa
gttgcttctattgaagctcaaacaacaagaaaactagtatttaagtcaca
aaggctgatgagagtcgaataaaggaatgaaacagattcgtgcttgatga
ccagaaggatctctgcctactttgtccccataaggcactcatccttcagt
gtgtccaacatgttaaatcttctgaggaggaagcaaagtgtctttgttta
caagtgctgaagggcttagtagtctgaaaaccaatatttattgtgcaata
agttcttcacagtacattgcttgcatatacaaagagcattcaaggagcaa
atgatttgactttcccactttcttcctattctgaaagggatcaggccttt
caaagattttgccagacacccaatcaaactcatgtgactataattaaaat
acgtccaaattataattattatttccctattaggtctttggattcaggga
aaagtctaccttgaaagtctgactctgtgtcaaattgtccccttttgcat
atgacatagattatttttccacagggcctttctggatgagaacctcatga
gaatagaggttaaggattctttttactttattgacctatgttga
gaattcagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaagga
aggaaggaaggaaggtgaaaatacaaaaataactaaataaaatattttat
ctttactaaaatattgaattaactattggtagagctcaggaaggagtcaa
actattcctatttacagatgacaatatacataaggtattctaaatattct
gttagaaagtttctagaagtgatgaaggcttttctaagtggcaggatata
aaatcaacatgcaaaagtcagtatactttatataaaccattaatgtgtat
gctgagaaagaaaatattgaatcattcatactctcaatagcttcaagcat
aatctggaaataaatataaccaagttgataagagacctctatagaggaaa
ctttaattctctgaatagttagattaaggaagacaatagaagacaaaacg
gtcttccatgctcatcgatggatagaattaattttattaaaattctcatt
ctgccaaaagcaatttacagattcaatggaatcttaatcaaacatcccat
gatatctttcacaaaatgggggaaaattataaaattcatgtggaagcaga
aagaatgcaagatagccaaagcaagcctgagcgaaaagaacaatgttgga
gttattaccgttccatgtactaataaaaagagcatgtcgatgacataaat
caaacaccatgtacatcaatggaacaaaagcaacccaaatatgagtgcat
gtaattacaggcatttgattttacacaaatatgtcaaaagtacagacttg
aagaaagagagcatcttcaacaaatattgctaagtatactagatgtccaa
atggtgaaagatgaaaatggacctatatctgttaccctgggaaaaaaacc
acctccaaatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49398086_49399227
seq2: B6Ng01-307L24.b_47_1190 (reverse)

seq1  TCAACATA-GTC-ATAAAGTAAAAAAGAAATCCTAACTTCTA-TCTCATG  47
      |||||||| ||| ||||||| ||||||||  | |||| |||| |||||||
seq2  TCAACATAGGTCAATAAAGT-AAAAAGAATCCTTAACCTCTATTCTCATG  49

seq1  AGG-TCTCATCCAGAAA-GCCTTGTG--AAAATAATCTATTGTCATATGC  93
      ||| ||||||||||||| ||| ||||  ||||||||||| ||||||||||
seq2  AGGTTCTCATCCAGAAAGGCCCTGTGGAAAAATAATCTA-TGTCATATGC  98

seq1  AAAAGGGGACAATTTGACAACAGAGTCAAGACTTTCAAGGTAGACTTTTC  143
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  AAAAGGGGACAATTTGAC-ACAGAGTC-AGACTTTCAAGGTAGACTTTTC  146

seq1  CCTGAATTCAAAGACCTAATAGGGAAAATAATAATTATAATTTGGACGTA  193
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  CCTGAATCCAAAGACCTAATAGGG-AAATAATAATTATAATTTGGACGTA  195

seq1  TTTTTAATTATAGTCACATGAGTTTGATTGGGTGTCTGGCAAAATCTTTG  243
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTAATTATAGTCACATGAGTTTGATTGGGTGTCTGGCAAAATCTTTG  244

seq1  AAAGGCCTGAT-CCTTTCAGAATAGGAAGAAAGTGGGAAAGTCAAATCAT  292
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTGATCCCTTTCAGAATAGGAAGAAAGTGGGAAAGTCAAATCAT  294

seq1  TTGCTCCTTGAATGCTCTTTGTATATGCAAGCAATGTACTGTGAAGAACT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTTGAATGCTCTTTGTATATGCAAGCAATGTACTGTGAAGAACT  344

seq1  TATTGCACAATAAATATTGGTTTTCAGACTACTAAGCCCTTCAGCACTTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCACAATAAATATTGGTTTTCAGACTACTAAGCCCTTCAGCACTTG  394

seq1  TAAACAAAGACACTTTGCTTCCTCCTCAGAAGATTTAACATGTTGGACAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAGACACTTTGCTTCCTCCTCAGAAGATTTAACATGTTGGACAC  444

seq1  ACTGAAGGATGAGTGCCTTATGGGGACAAAGTAGGCAGAGATCCTTCTGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGATGAGTGCCTTATGGGGACAAAGTAGGCAGAGATCCTTCTGG  494

seq1  TCATCAAGCACGAATCTGTTTCATTCCTTTATTCGACTCTCATCAGCCTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGCACGAATCTGTTTCATTCCTTTATTCGACTCTCATCAGCCTT  544

seq1  TGTGACTTAAATACTAGTTTTCTTGTTGTTTGAGCTTCAATAGAAGCAAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTAAATACTAGTTTTCTTGTTGTTTGAGCTTCAATAGAAGCAAC  594

seq1  TTCCTCCATTTCTATCACTCATGTGCTAAGGATTATAAACTGACCATAAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCATTTCTATCACTCATGTGCTAAGGATTATAAACTGACCATAAT  644

seq1  GTAAAACTGGTTTCAAAATCAAATCGGCAGTTAATAGTTAGGTATGTATC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTGGTTTCAAAATCAAATCGGCAGTTAATAGTTAGGTATGTATC  694

seq1  AACCGGCAAGCTTGCAGAATTCTTTAATTCTCCCCACTGTTTTCATCTTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGCAAGCTTGCAGAATTCTTTAATTCTCCCCACTGTTTTCATCTTA  744

seq1  ACCAACATTATCAGTGCATTAAATAGTATGTTGCAGATACCAAAGTAACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATTATCAGTGCATTAAATAGTATGTTGCAGATACCAAAGTAACA  794

seq1  GAAAGGGTATGTGAGCCAAAGGAGGACAAGAGGTGGAAGGGACAGATAGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTATGTGAGCCAAAGGAGGACAAGAGGTGGAAGGGACAGATAGA  844

seq1  AGGAATGTGGTGTGAAAGTACAGGAGAACTTCCTGGGAATCAATGGGTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTGGTGTGAAAGTACAGGAGAACTTCCTGGGAATCAATGGGTTT  894

seq1  AATTGAGGATTGGGGAGAGGAGCGAGTTGAAAGGAGGTTAAGCAATTCCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGGATTGGGGAGAGGAGCGAGTTGAAAGGAGGTTAAGCAATTCCC  944

seq1  CACTCATTGTTGGCTTTCAGAGTGCTAGAAGGTGATATACAGCCTAAAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTGTTGGCTTTCAGAGTGCTAGAAGGTGATATACAGCCTAAAGA  994

seq1  GGGAGAAGATTCATCATGGTATTTGCCCAAGGATGGACCCTGGCATATAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGATTCATCATGGTATTTGCCCAAGGATGGACCCTGGCATATAA  1044

seq1  TACTGACAAATGTGCCTCATGGTTCAATAGTACTATGAATTTTATAAGGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACAAATGTGCCTCATGGTTCAATAGTACTATGAATTTTATAAGGG  1094

seq1  TAATGAACCACTTCCTGATTGTATCTGAGGCCCCTCCTCAGACAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACCACTTCCTGATTGTATCTGAGGCCCCTCCTCAGACAGAATTC  1144

seq1: chr18_49282065_49282701
seq2: B6Ng01-307L24.g_66_702

seq1  GAATTCAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  50

seq1  AGGAAGGAAGGAAGGTGAAAATACAAAAATAACTAAATAAAATATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGTGAAAATACAAAAATAACTAAATAAAATATTTTAT  100

seq1  CTTTACTAAAATATTGAATTAACTATTGGTAGAGCTCAGGAAGGAGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTAAAATATTGAATTAACTATTGGTAGAGCTCAGGAAGGAGTCAA  150

seq1  ACTATTCCTATTTACAGATGACAATATACATAAGGTATTCTAAATATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCCTATTTACAGATGACAATATACATAAGGTATTCTAAATATTCT  200

seq1  GTTAGAAAGTTTCTAGAAGTGATGAAGGCTTTTCTAAGTGGCAGGATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAAGTTTCTAGAAGTGATGAAGGCTTTTCTAAGTGGCAGGATATA  250

seq1  AAATCAACATGCAAAAGTCAGTATACTTTATATAAACCATTAATGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACATGCAAAAGTCAGTATACTTTATATAAACCATTAATGTGTAT  300

seq1  GCTGAGAAAGAAAATATTGAATCATTCATACTCTCAATAGCTTCAAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAAGAAAATATTGAATCATTCATACTCTCAATAGCTTCAAGCAT  350

seq1  AATCTGGAAATAAATATAACCAAGTTGATAAGAGACCTCTATAGAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGAAATAAATATAACCAAGTTGATAAGAGACCTCTATAGAGGAAA  400

seq1  CTTTAATTCTCTGAATAGTTAGATTAAGGAAGACAATAGAAGACAAAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCTCTGAATAGTTAGATTAAGGAAGACAATAGAAGACAAAACG  450

seq1  GTCTTCCATGCTCATCGATGGATAGAATTAATTTTATTAAAATTCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCATGCTCATCGATGGATAGAATTAATTTTATTAAAATTCTCATT  500

seq1  CTGCCAAAAGCAATTTACAGATTCAATGGAATCTTAATCAAACATCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAAAGCAATTTACAGATTCAATGGAATCTTAATCAAACATCCCAT  550

seq1  GATATCTTTCACAAAATGGGGGAAAATTATAAAATTCATGTGGAAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTTCACAAAATGGGGGAAAATTATAAAATTCATGTGGAAGCAGA  600

seq1  AAGAATGCAAGATAGCCAAAGCAAGCCTGAGCGAAAA  637
      |||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCAAGATAGCCAAAGCAAGCCTGAGCGAAAA  637