BAC Information

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BAC

Clone NameB6Ng01-307N14
Chromosome18 (Build37)
Map Location 17,591,776 - 17,745,310
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307N14.bB6Ng01-307N14.g
ACCGA100509GA100510
length1,1071,045
definitionB6Ng01-307N14.b B6Ng01-307N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,744,204 - 17,745,310)(17,591,776 - 17,592,480)
sequence
gaattcaactcccaaccaccaccatttgtacacttacagtgtactcacat
acataaagtaaataaataaatcttttctttaaaaaaaagagttgctgtgg
ctatgatgtctgttcataccaataaaaccctaacacttatcagataaaga
tgtttgctgtgaaaccatacaacctgagtttgattgccaggacctacgtt
ttggaaggagaaaaatgacttctacaattgttctctgtcttccttgcatg
gattgctgtttatgtgtacccacctctacatatgtgtgtaccacatgtaa
agaaatatgtttttatgtctattatttgaaaaagaggaaagatatctctt
ccatttttattgtatccatcagcaatcatacctagtatgcaacacacaac
agatatctctgttaaagtgctttgaattaaaacacaaggaatgactggaa
gcagtaagtgataagccatcatattgttgccccaatattgtcataacatg
tatagaaaagcatgtaaacttctatattactagagatcactaaggtcaaa
attacaccagttttcttgcatattttataattttgtcactcgaatattct
ctccacctagtaacattgatgcatgtctttatgctgtagaggaatgcaat
tattgtggttcagaaaatttataattacaaacattattatttctttaggt
caaaacaaaggtataatattttctagagcttcgttatgttattggtgaat
gttatttaaagacaaaattagctccctaattttgcttagtagcaaaggtg
gcaggatgctaatgaagtctacttcagtttatggacaatctaggcaggat
agcttactcaacctgcaaattatttgcaaatgtatgaaatgtttatagct
gcagttgaaataccatattaagatgtttctggggtcacattaaatgactg
agtgggttttaaaactttgtccttgtagtttcttgcagaaagaaaaagtc
agataaacagttggcatttgcaattgtgttatgtggtgagatggcaatat
ttttatttatatttgagtacattttcatatttgctgtatcttcttgtgtt
tgggggg

gaattcctgtctgaaatgtagcttcaagggaaatgtttttctagatttcg
gtacataggcactcacgagaggtcaaggctaactgtcaagctggagctgg
ggacggaactcagttttatcttcattgtcctgctttgtacacagggcaca
tccaagtgttatatgtcacatacaagtgttatatgtcatggggggttaca
tcaatatttctggaaatcacaaatgccaaggaagtgtctgcttctctcta
agttagttgtgagaggtcattgtgcaaatctggaaaactgaagtgcagac
aatgggacagatatccaggacatcaggaggaggagagtgggtctgcagaa
gccagtaagtgctgtgtgcagagtggtgatatgtgtgtccagacaggtga
tatggaatgtagagagcaacactgaaaagacccttaaggtggctggagct
cagatctttctattgtcagccctgaatgttgggtatggagattcagggct
tggtgtacccccactgtttttcagattgctttggtctgatcttttcttgc
tgcttttctgaaatcttcagaaacgaaatttccatctgtgcccacatata
tagaaactctgtagcttatgttttaatattacacagactcatagttcaca
gattatctgcaatctcagagcagactctgaatttggacttttgtaagatt
ttcgtatgtttaatttgggagtgagaattttagggatatactaagtttgt
tattttcattatgagatcaaggtaaaactttaggaacccacagtggggta
ttgtgatttaaaatgacgtgtctaggtgacacgatgctaaaggataattt
tgtgatgattttcttagtttgacaatttgaatagatttgtaatgcctaga
tgaagagtgaaggcctggtgtagacatgtctgtgatgtggtacaagcaac
taaaatatagaaattataatctaaatttttttttccatttttttataggt
atttaactcattacatttcaatgcctataccgaagttccccatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17744204_17745310
seq2: B6Ng01-307N14.b_44_1150 (reverse)

seq1  CCCCCCAAACACA--GAGATACAGGCAAATATGAAAATGTACTCAAATAT  48
      |||||||||||||   ||||||| ||||||||||||||||||||||||||
seq2  CCCCCCAAACACAAGAAGATACA-GCAAATATGAAAATGTACTCAAATAT  49

seq1  AAATAAAAATATTTGCCATCTCA-CACAT-ACACAATTGCAAAATGCCAA  96
      ||||||||||| ||||||||||| ||||| |||||||||| ||||||| |
seq2  AAATAAAAATA-TTGCCATCTCACCACATAACACAATTGC-AAATGCC-A  96

seq1  ACTGTTTATCTGACTTTTCTTTCCTGCAAGAAACTACAAGGACAAAGTTT  146
      ||||||||||||||||||  || |||||||||||||||||||||||||||
seq2  ACTGTTTATCTGACTTTTTCTTTCTGCAAGAAACTACAAGGACAAAGTTT  146

seq1  TAAAA-CCACTCAGTCATTTTAATGTGACCCCAGAAACATCTTAATATGG  195
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAAACCCACTCAGTCA-TTTAATGTGACCCCAGAAACATCTTAATATGG  195

seq1  TATTTCAACTGCAGCTATAAACATTTCATACATTTGCAAATAATTTGCAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAACTGCAGCTATAAACATTTCATACATTTGCAAATAATTTGCAG  245

seq1  GTTGAGTAAGCTATCCTGCCTAGATTGTCCATAAACTGAAGTAGACTTCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTAAGCTATCCTGCCTAGATTGTCCATAAACTGAAGTAGACTTCA  295

seq1  TTAGCATCCTGCCACCTTTGCTACTAAGCAAAATTAGGGAGCTAATTTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCCTGCCACCTTTGCTACTAAGCAAAATTAGGGAGCTAATTTTG  345

seq1  TCTTTAAATAACATTCACCAATAACATAACGAAGCTCTAGAAAATATTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAATAACATTCACCAATAACATAACGAAGCTCTAGAAAATATTAT  395

seq1  ACCTTTGTTTTGACCTAAAGAAATAATAATGTTTGTAATTATAAATTTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTTTTGACCTAAAGAAATAATAATGTTTGTAATTATAAATTTTC  445

seq1  TGAACCACAATAATTGCATTCCTCTACAGCATAAAGACATGCATCAATGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACAATAATTGCATTCCTCTACAGCATAAAGACATGCATCAATGT  495

seq1  TACTAGGTGGAGAGAATATTCGAGTGACAAAATTATAAAATATGCAAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGTGGAGAGAATATTCGAGTGACAAAATTATAAAATATGCAAGAA  545

seq1  AACTGGTGTAATTTTGACCTTAGTGATCTCTAGTAATATAGAAGTTTACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTGTAATTTTGACCTTAGTGATCTCTAGTAATATAGAAGTTTACA  595

seq1  TGCTTTTCTATACATGTTATGACAATATTGGGGCAACAATATGATGGCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTATACATGTTATGACAATATTGGGGCAACAATATGATGGCTT  645

seq1  ATCACTTACTGCTTCCAGTCATTCCTTGTGTTTTAATTCAAAGCACTTTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTACTGCTTCCAGTCATTCCTTGTGTTTTAATTCAAAGCACTTTA  695

seq1  ACAGAGATATCTGTTGTGTGTTGCATACTAGGTATGATTGCTGATGGATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATATCTGTTGTGTGTTGCATACTAGGTATGATTGCTGATGGATA  745

seq1  CAATAAAAATGGAAGAGATATCTTTCCTCTTTTTCAAATAATAGACATAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAATGGAAGAGATATCTTTCCTCTTTTTCAAATAATAGACATAA  795

seq1  AAACATATTTCTTTACATGTGGTACACACATATGTAGAGGTGGGTACACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTTCTTTACATGTGGTACACACATATGTAGAGGTGGGTACACA  845

seq1  TAAACAGCAATCCATGCAAGGAAGACAGAGAACAATTGTAGAAGTCATTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGCAATCCATGCAAGGAAGACAGAGAACAATTGTAGAAGTCATTT  895

seq1  TTCTCCTTCCAAAACGTAGGTCCTGGCAATCAAACTCAGGTTGTATGGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCCAAAACGTAGGTCCTGGCAATCAAACTCAGGTTGTATGGTT  945

seq1  TCACAGCAAACATCTTTATCTGATAAGTGTTAGGGTTTTATTGGTATGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAAACATCTTTATCTGATAAGTGTTAGGGTTTTATTGGTATGAA  995

seq1  CAGACATCATAGCCACAGCAACTCTTTTTTTTAAAGAAAAGATTTATTTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATCATAGCCACAGCAACTCTTTTTTTTAAAGAAAAGATTTATTTA  1045

seq1  TTTACTTTATGTATGTGAGTACACTGTAAGTGTACAAATGGTGGTGGTTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTATGTATGTGAGTACACTGTAAGTGTACAAATGGTGGTGGTTG  1095

seq1  GGAGTTGAATTC  1107
      ||||||||||||
seq2  GGAGTTGAATTC  1107


seq1: chr18_17591776_17592480
seq2: B6Ng01-307N14.g_413_1112

seq1  CAGAAGCCAGTAAGTGCTGTGTGCAGAGTGGTGATATGTGTGTCCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCAGTAAGTGCTGTGTGCAGAGTGGTGATATGTGTGTCCAGACA  50

seq1  GGTGATATGGAATGTAGAGAGCAACACTGAAAAGACCCTTAAGGTGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATATGGAATGTAGAGAGCAACACTGAAAAGACCCTTAAGGTGGCTG  100

seq1  GAGCTCAGATCTTTCTATTGTCAGCCCTGAATGTTGGGTATGGAGATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGATCTTTCTATTGTCAGCCCTGAATGTTGGGTATGGAGATTCA  150

seq1  GGGCTTGGTGTACCCCCACTGTTTTTCAGATTGCTTTGGTCTGATCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGTGTACCCCCACTGTTTTTCAGATTGCTTTGGTCTGATCTTTT  200

seq1  CTTGCTGCTTTTCTGAAATCTTCAGAAACGAAATTTCCATCTGTGCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCTTTTCTGAAATCTTCAGAAACGAAATTTCCATCTGTGCCCAC  250

seq1  ATATATAGAAACTCTGTAGCTTATGTTTTAATATTACACAGACTCATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGAAACTCTGTAGCTTATGTTTTAATATTACACAGACTCATAGT  300

seq1  TCACAGATTATCTGCAATCTCAGAGCAGACTCTGAATTTGGACTTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATTATCTGCAATCTCAGAGCAGACTCTGAATTTGGACTTTTGTA  350

seq1  AGATTTTCGTATGTTTAATTTGGGAGTGAGAATTTTAGGGATATACTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCGTATGTTTAATTTGGGAGTGAGAATTTTAGGGATATACTAAG  400

seq1  TTTGTTATTTTCATTATGAGATCAAGGTAAAACTTTAGGAACCCACAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTTCATTATGAGATCAAGGTAAAACTTTAGGAACCCACAGTG  450

seq1  GGGTATTGTGATTTAAAATGACGTGTCTAGGTGACACGATGCTAAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTGTGATTTAAAATGACGTGTCTAGGTGACACGATGCTAAAGGAT  500

seq1  AATTTTGTGATGATTTTCTTAGTTTGACAATTTGAATAGATTTGTAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTTTGTGATGATTTTCTTAGTTTGACAATTTGAATAGATTTGT-AATG  549

seq1  CCTAGATGAAGAGTGAAGGCCTGGTGTAGACATGTCTGTGATGTGGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGAAGAGTGAAGGCCTGGTGTAGACATGTCTGTGATGTGGTACA  599

seq1  AGCAACTAAAATAATAGAAAATATAAATCTAAAATTTTTTTTCCATTTTT  650
      |||||||||||| ||||||| ||| |||||||| ||||||||||||||||
seq2  AGCAACTAAAAT-ATAGAAATTAT-AATCTAAATTTTTTTTTCCATTTTT  647

seq1  TATTAGGTATTTAACTCATTTACATTTCCAATG-CTATACCAAAAGTCCC  699
      |  ||||||||||||||| |||||||| ||||| |||||||  |||| ||
seq2  TTATAGGTATTTAACTCA-TTACATTT-CAATGCCTATACC-GAAGTTCC  694

seq1  CCATAT  705
      ||||||
seq2  CCATAT  700


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