BAC Information

Click to search

BAC

Clone NameB6Ng01-307O15
Chromosome18 (Build37)
Map Location 53,178,942 - 53,322,682
singlet/doubletdoublet
Overlap geneLOC100042430
Upstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317
Downstream geneSnx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307O15.bB6Ng01-307O15.g
ACCGA100554GA100555
length1,0021,033
definitionB6Ng01-307O15.b B6Ng01-307O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,178,942 - 53,179,955)(53,321,637 - 53,322,682)
sequence
gaattcctcctttcaagaagacgaaaatcaaaaagtccctcatgccaaga
gccttggttgtttgcagcagcatccagaatgtgctacatgttgtctcgtc
tgtattaaagatgagcaagaggtcgtccctgccttcggtgagcctatagc
ctataaaagcagggcctgtaggtaaaagaaaggaactgcgctggagctca
gtgagcctttgaaatctgtgcctgcagaagggctctcaaggaggagagtc
cattctgtctggggtgattcttgaaatgctaatgagaaagctacaggatc
tgtaaaataccatccttagcttggtttatatcattattcttcctgctata
aaattcggttgcccctgtcaagagattttttttttaatgttcttttactg
gcttaccttctgaagcaaaagttacaatttacctctaggctgataaactt
tttggctagattaggacaaagctaatgtgctaacagagacaagaaagaaa
gctaagcactggtaacatccacttcctgtgtctactgcacatgtgtgtct
cttggaaacatttcatagtcatacaaaaatgtacggagtccaaaatgagt
ctccaaaattgacttagaagtgtgatttttagataaaccccagttactct
tggcaatacataaatataaacttgaaagtctttgctagtatcatatcttc
ctaaggaaggagaatagagaaggggatctgaagacaatctcacagggact
gtgagatcagcctgtaagagaaactagttggagtcaggcagtggtatcac
acgcctttaatcctagcacttgggaggcagaggcaggaggatttctgagc
tcgaggccagcctggtctacagagtaagttacaggatagccaggtctaca
cagagaaaccctatcttaaaaaccagaagaagaaagaagaagaaagaaga
agaaagaagaaagaaggagaaagaagaagaagaggagggggaggagaggg
ga
gaattcactttcctaatatgtagcgctaagtagaaacataaacacgttga
aaactgggaagtttaatgagataaggcttgttgaaggagggtctgaggga
aaaatgatagtagagagcaggtcgggagatagtcagctcagagcttcagg
gcagctcaaactagatgggcataaactctttcagctgtaacagacaccag
ataaagaggctaccggaagttaatatgtattcagctcagccacaaggccc
aagggtttatatgtaggcaaaaacaggagtttcgaaagatctcaaagttc
aagttaaaaggtactctcaagcattttttaaaaagaagaagaaaaggttt
tgttgttgttgtttgtttgtttgtttgttttttccagacagggtttctct
gtatagccctggctgtcctggaactcactttgtagaccaggctggcctca
aactcagaaatccacctgcctctgcctcctgagtgctgggattaaaggca
agcaccaccatgccccgcgaaaaggcttatttttaataaagttactatcc
ccttaagttgtagaactttactcctaggtgttagaagtaaaactatgtat
tataacatgcagtcagcattttaataataattatgttgaggaaataattt
tctatagaaaagaaagaagtggcaagttttgctagtaatcattttttttt
cctagttcttttggttgagttacctcttgcttccttactttcatcgagac
agggtttctcctgtgtagccctggctatcctggaactcactcttgtagac
tggattgggcctttgaacttacaaagaatccctcctgacttctgccctcc
tgaaggctgggatcaaagtggtacactcctcacctctctggcacgtggta
tttttttatacacgctcagtggccgccaaaaatatgccttaaggcaacga
cttgttagtcacgggtgactattcacccagtgaagcctgtgcaagtagac
aatggagaagtatcagtcttcaaatgtcgtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_53178942_53179955
seq2: B6Ng01-307O15.b_46_1047

seq1  GAATTCCTCCTTTCAAGAAGACGAAAATCAAAAAGTCCCTCATGCCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTTCAAGAAGACGAAAATCAAAAAGTCCCTCATGCCAAGA  50

seq1  GCCTTGGTTGTTTGCAGCAGCATCCAGAATGTGCTACATGTTGTCTCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTTGTTTGCAGCAGCATCCAGAATGTGCTACATGTTGTCTCGTC  100

seq1  TGTATTAAAGATGAGCAAGAGGTCGTCCCTGCCTTCGGTGAGCCTATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAAGATGAGCAAGAGGTCGTCCCTGCCTTCGGTGAGCCTATAGC  150

seq1  CTATAAAAGCAGGGCCTGTAGGTAAAAGAAAGGAACTGCGCTGGAGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAGCAGGGCCTGTAGGTAAAAGAAAGGAACTGCGCTGGAGCTCA  200

seq1  GTGAGCCTTTGAAATCTGTGCCTGCAGAAGGGCTCTCAAGGAGGAGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCTTTGAAATCTGTGCCTGCAGAAGGGCTCTCAAGGAGGAGAGTC  250

seq1  CATTCTGTCTGGGGTGATTCTTGAAATGCTAATGAGAAAGCTACAGGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTCTGGGGTGATTCTTGAAATGCTAATGAGAAAGCTACAGGATC  300

seq1  TGTAAAATACCATCCTTAGCTTGGTTTATATCATTATTCTTCCTGCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATACCATCCTTAGCTTGGTTTATATCATTATTCTTCCTGCTATA  350

seq1  AAATTCGGTTGCCCCTGTCAAGAGATTTTTTTTTTAATGTTCTTTTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCGGTTGCCCCTGTCAAGAGATTTTTTTTTTAATGTTCTTTTACTG  400

seq1  GCTTACCTTCTGAAGCAAAAGTTACAATTTACCTCTAGGCTGATAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCTTCTGAAGCAAAAGTTACAATTTACCTCTAGGCTGATAAACTT  450

seq1  TTTGGCTAGATTAGGACAAAGCTAATGTGCTAACAGAGACAAGAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTAGATTAGGACAAAGCTAATGTGCTAACAGAGACAAGAAAGAAA  500

seq1  GCTAAGCACTGGTAACATCCACTTCCTGTGTCTACTGCACATGTGTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCACTGGTAACATCCACTTCCTGTGTCTACTGCACATGTGTGTCT  550

seq1  CTTGGAAACATTTCATAGTCATACAAAAATGTACGGAGTCCAAAATGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAACATTTCATAGTCATACAAAAATGTACGGAGTCCAAAATGAGT  600

seq1  CTCCAAAATTGACTTAGAAGTGTGATTTTTAGATAAACCCCAGTTACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAATTGACTTAGAAGTGTGATTTTTAGATAAACCCCAGTTACTCT  650

seq1  TGGCAATACATAAATATAAACTTGAAAGTCTTTGCTAGTATCATATCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATACATAAATATAAACTTGAAAGTCTTTGCTAGTATCATATCTTC  700

seq1  CTAAGGAAGGAGAATAGAGAAGGGGATCTGAAGACAATCTCACAGGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAGGAGAATAGAGAAGGGGATCTGAAGACAATCTCACAGGGACT  750

seq1  GTGAGATCAGCCTGTAAGAGAAACTAGTTGGAGTCAGGCAGTGGTATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATCAGCCTGTAAGAGAAACTAGTTGGAGTCAGGCAGTGGTATCAC  800

seq1  ACGCCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGC  850

seq1  TCGAGGCCAGCCTGGTCTACAGAGTAAGTTACAGGATAGCCAGGTCTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCTGGTCTACAGAGTAAGTTACAGGATAGCCAGGTCTACA  900

seq1  CAGAGAAACCCTATCTTAAAAAACCAGAAAGAAAGAAAGAAAGAAAGAAA  950
      ||||||||||||||||| |||||||||||   |||||||||   ||||||
seq2  CAGAGAAACCCTATCTT-AAAAACCAGAA--GAAGAAAGAA--GAAGAAA  945

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAAGAGGA-  999
      |||   ||||||| |||||||||  | |||||| |||||   ||||||| 
seq2  GAA--GAAGAAAG-AAGAAAGAA--GGAGAAAG-AAGAA--GAAGAGGAG  987

seq1  GGGGAGGAGAGGGGA  1014
      |||||||||||||||
seq2  GGGGAGGAGAGGGGA  1002

seq1: chr18_53321637_53322682
seq2: B6Ng01-307O15.g_65_1097 (reverse)

seq1  CTGACGACATTTTGGAAGACTCTGATACCTTCTCCATGTTCCTTCCCTGC  50
      ||||||||||||  |||||  |||||| |||||||||  ||  | | |||
seq2  CTGACGACATTT--GAAGA--CTGATA-CTTCTCCATTGTC--TACTTGC  43

seq1  ACAGGCTTTCACTGGGTGGATAGTCACCCGTGACTAACAGTCCGTTTGCC  100
      |||||| ||||||||||| ||||||||||||||||||||   || |||||
seq2  ACAGGC-TTCACTGGGTGAATAGTCACCCGTGACTAACAAGTCG-TTGCC  91

seq1  TT-AGGCATATTTTT-GCGGCCACTGGAGCGTGTATAAAAAAATAACCAC  148
      || |||||||||||| ||||||||| |||||||||||||||||| |||||
seq2  TTAAGGCATATTTTTGGCGGCCACT-GAGCGTGTATAAAAAAAT-ACCAC  139

seq1  GTGCCAGAGAGGTGAGGAGTGTACACCTTTGATCCCAGCCCTCAGGA-GG  197
      ||||||||||||||||||||||||  |||||||||||||| |||||| ||
seq2  GTGCCAGAGAGGTGAGGAGTGTACCACTTTGATCCCAGCCTTCAGGAGGG  189

seq1  CAG-AGTCAGGAGG--ATCTTTGTAAGTTCAA--GGCCAATCCAGTCTAC  242
      ||| ||||||||||   |||||||||||||||  | ||||||||||||||
seq2  CAGAAGTCAGGAGGGATTCTTTGTAAGTTCAAAGGCCCAATCCAGTCTAC  239

seq1  -AGAGTGAGTTCCAGGATAGCCAGGGCTACACA-GAGAAACCCTGTCTCA  290
       |||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  AAGAGTGAGTTCCAGGATAGCCAGGGCTACACAGGAGAAACCCTGTCTC-  288

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACCAAAAGA  340
                  |  |||  ||  ||  || |   ||  |||||||||||
seq2  -----------GATGAAAGTAAGGAAGCAAGAGGTAACTCAACCAAAAGA  327

seq1  ACTAGGAAAAAAAAATGATTACTAGCAAAACTTGCCACTTCTTTCTTTTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAAAAAAAATGATTACTAGCAAAACTTGCCACTTCTTTCTTTTC  377

seq1  TATAGAAAATTATTTCCTCAACATAATTATTATTAAAATGCTGACTGCAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAATTATTTCCTCAACATAATTATTATTAAAATGCTGACTGCAT  427

seq1  GTTATAATACATAGTTTTACTTCTAACACCTAGGAGTAAAGTTCTACAAC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATACATAGTTTTACTTCTAACACCTAGGAGTAAAGTTCTACAAC  477

seq1  TTAAGGGGATAGTAACTTTATTAAAAATAAGCCTTTTCGCGGGGCATGGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGGATAGTAACTTTATTAAAAATAAGCCTTTTCGCGGGGCATGGT  527

seq1  GGTGCTTGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTC  577

seq1  TGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGG  627

seq1  CTATACAGAGAAACCCTGTCTGGAAAAAACAAACAAACAAACAAACAACA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGAGAAACCCTGTCTGGAAAAAACAAACAAACAAACAAACAACA  677

seq1  ACAACAAAACCTTTTCTTCTTCTTTTTAAAAAATGCTTGAGAGTACCTTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAACCTTTTCTTCTTCTTTTTAAAAAATGCTTGAGAGTACCTTT  727

seq1  TAACTTGAACTTTGAGATCTTTCGAAACTCCTGTTTTTGCCTACATATAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGAACTTTGAGATCTTTCGAAACTCCTGTTTTTGCCTACATATAA  777

seq1  ACCCTTGGGCCTTGTGGCTGAGCTGAATACATATTAACTTCCGGTAGCCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGGCCTTGTGGCTGAGCTGAATACATATTAACTTCCGGTAGCCT  827

seq1  CTTTATCTGGTGTCTGTTACAGCTGAAAGAGTTTATGCCCATCTAGTTTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTGGTGTCTGTTACAGCTGAAAGAGTTTATGCCCATCTAGTTTG  877

seq1  AGCTGCCCTGAAGCTCTGAGCTGACTATCTCCCGACCTGCTCTCTACTAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCTGAAGCTCTGAGCTGACTATCTCCCGACCTGCTCTCTACTAT  927

seq1  CATTTTTCCCTCAGACCCTCCTTCAACAAGCCTTATCTCATTAAACTTCC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCCCTCAGACCCTCCTTCAACAAGCCTTATCTCATTAAACTTCC  977

seq1  CAGTTTTCAACGTGTTTATGTTTCTACTTAGCGCTACATATTAGGAAAGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCAACGTGTTTATGTTTCTACTTAGCGCTACATATTAGGAAAGT  1027

seq1  GAATTC  1046
      ||||||
seq2  GAATTC  1033