BAC Information

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BAC

Clone NameB6Ng01-308C07
Chromosome18 (Build37)
Map Location 50,347,697 - 50,348,811
singlet/doubletsinglet
Overlap geneHsd17b4
Upstream geneDtwd2, Dmxl1, Tnfaip8, LOC626721
Downstream geneLOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308C07.bB6Ng01-308C07.g
ACCGA100721GA100722
length1,2091,101
definitionB6Ng01-308C07.b B6Ng01-308C07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccaaatggctgagaagcacctaaaaacgtg
ttcaacatccttaatcatcagcgaaatggaaatcaaaacagccctaagat
tcacctcacaccagtcagaatagctaagatcaaaaactcagatgacagca
gatgctggcaagaatgtggagaaagaggagcactcctccattgctggtgg
aattgcaagctagtgcaaccatttggaaatcagtttggcagttccttaga
aaattggacatagtactaccagaggatccagcaataccactcttaggcat
atacccagaagatgctccaacatgtaataaggatacatgctccactatgt
tcatatcagccttatttataatagccaaaagctggaaaaaacccagatgt
ccctcaacagatgaatggatacaagaaatgcggtacatttgcacaatgaa
gtactactcagctattaaaaacaatttaatttatgaaattcttggacaaa
tgtatgggtctggaggatatcattctgagtgaggtaacacaattataaaa
gatcacacatgatatgcacttgctgataagtggatattaacccagaagct
cagaatgcccaagatacaatttgcaaaacacatgaaactcaagaaggaag
accaacatgtggatacttcaatccttcttagaaaggggaacaggataccc
atggaaggagttacagggacaaattatagagcagagactgaaggaatgac
catccagaaactgccccacctggggatgcatcccataaataaccaccaaa
accagacactattgtggataccaacaagatttttgctgacaggagcttgg
tatagctgtctcctaagaggctctgccagtgcctgaaaaatacagaagtg
gttactcacattggacagagcacagggtccccaatgaaaggagctagaga
atgacccaaggagcagaatgggtttgcagccccataggagagcaacatat
gaactaaccagtatctccagagcttccctgggactaagaatcccaaagaa
aaaccacatagaatggctcgtgacttctagctgcataccttagcagaaga
tgcctagtcagtcaatcaatggggagggagaagtccttgtcttgaaagta
taatgcctagatgggaactgccgaccaggagaaggatgcgtagtggtgtg
ttaaaccag

gaattccccactgctgtccagtgcccaagagtagcaccgctccaaaggcc
atcagtcccctctgtgtcccatgtgtcccaacatcatttgcaaagtcttt
taacaataaattctggccgagagattaaaaattgcaaagattgtaaagag
aacagttatttttcagctagcacttcaaattgttagagttttgtcccatt
ttgtgaaagtatatgtacttaagagtaacttggagattgggtgttgtaag
ggtgaaggctactctgttattccaagaacaaagacattctctgtcaaaga
gtagttatcaataccagaaagttaacactggtacagtgttatctgctcta
acacttcagtaatgctccactctttgtcccaatagtgttgtttaaagcaa
aggaataataacagtagtggtagcaacagtagaaatggagagagggggag
aagtactctgggtgtggcttggtcacacattacactcagttaagtctctt
gttgcaaccttgatgcatttgtctgtctcatttgttaccttgatggattg
gaaaatttactttgaataatattcattagtttgtatttatttgatatcat
tcatgattaggttgttgaacttttggccaaaattgtagcaaagtattgtg
ttcttgcagtatctttttttcttgtaacaaaacaaaaccaaaccaaaccc
cttatattttagtgggagtggtagctcccttctgtaatcctagcatttag
gaagaagaggtaggaggatagccctcgagtttgaggacagcctagctcct
gggtgaatcagttttcatttgttctgttgtttggtgcataaagcaccttc
cctctcactcctttcacccactgaactgttgttactaatgtctctcgaca
gagaagtagatggtaccaggggcaggctggattgtgcccactgagccctg
gccatcctcggcagaggagcaaagcagtccagcctgtgattttaccttgc
cccttccctgtaagggcagtcattaagcaaacaatttctgactctttaga
gactattgatcataatgaagtgttattcactccataaccagttaactgtg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50347697_50348811
seq2: B6Ng01-308C07.g_68_1168

seq1  GAATTCCCCACTGCTGTCCAGTGCCCAAGAGTAGCACCGCTCCAAAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACTGCTGTCCAGTGCCCAAGAGTAGCACCGCTCCAAAGGCC  50

seq1  ATCAGTCCCCTCTGTGTCCCATGTGTCCCAACATCATTTGCAAAGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCCCTCTGTGTCCCATGTGTCCCAACATCATTTGCAAAGTCTTT  100

seq1  TAACAATAAATTCTGGCCGAGAGATTAAAAATTGCAAAGATTGTAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAAATTCTGGCCGAGAGATTAAAAATTGCAAAGATTGTAAAGAG  150

seq1  AACAGTTATTTTTCAGCTAGCACTTCAAATTGTTAGAGTTTTGTCCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTATTTTTCAGCTAGCACTTCAAATTGTTAGAGTTTTGTCCCATT  200

seq1  TTGTGAAAGTATATGTACTTAAGAGTAACTTGGAGATTGGGTGTTGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAAGTATATGTACTTAAGAGTAACTTGGAGATTGGGTGTTGTAAG  250

seq1  GGTGAAGGCTACTCTGTTATTCCAAGAACAAAGACATTCTCTGTCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGCTACTCTGTTATTCCAAGAACAAAGACATTCTCTGTCAAAGA  300

seq1  GTAGTTATCAATACCAGAAAGTTAACACTGGTACAGTGTTATCTGCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATCAATACCAGAAAGTTAACACTGGTACAGTGTTATCTGCTCTA  350

seq1  ACACTTCAGTAATGCTCCACTCTTTGTCCCAATAGTGTTGTTTAAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAGTAATGCTCCACTCTTTGTCCCAATAGTGTTGTTTAAAGCAA  400

seq1  AGGAATAATAACAGTAGTGGTAGCAACAGTAGAAATGGAGAGAGGGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAATAACAGTAGTGGTAGCAACAGTAGAAATGGAGAGAGGGGGAG  450

seq1  AAGTACTCTGGGTGTGGCTTGGTCACACATTACACTCAGTTAAGTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCTGGGTGTGGCTTGGTCACACATTACACTCAGTTAAGTCTCTT  500

seq1  GTTGCAACCTTGATGCATTTGTCTGTCTCATTTGTTACCTTGATGGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAACCTTGATGCATTTGTCTGTCTCATTTGTTACCTTGATGGATTG  550

seq1  GAAAATTTACTTTGAATAATATTCATTAGTTTGTATTTATTTGATATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTACTTTGAATAATATTCATTAGTTTGTATTTATTTGATATCAT  600

seq1  TCATGATTAGGTTGTTGAACTTTTGGCCAAAATTGTAGCAAAGTATTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTAGGTTGTTGAACTTTTGGCCAAAATTGTAGCAAAGTATTGTG  650

seq1  TTCTTGCAGTATCTTTTTTTCTTGTAACAAAACAAAACCAAACCAAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCAGTATCTTTTTTTCTTGTAACAAAACAAAACCAAACCAAACCC  700

seq1  CTTATATTTTAGTGGGAGTGGTAGCTCCCTTCTGTAATCCTAGCATTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTTAGTGGGAGTGGTAGCTCCCTTCTGTAATCCTAGCATTTAG  750

seq1  GAAGAAGAGGTAGGAGGATAGCCCTCGAGTTTGAGGACAGCCTAGGCTCC  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAGAAGAGGTAGGAGGATAGCCCTCGAGTTTGAGGACAGCCTA-GCTCC  799

seq1  TGGGTGAATCAGGTTTTCATTTGTTCTGTTGTTTGGTGCATAAAGCACCT  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAATCA-GTTTTCATTTGTTCTGTTGTTTGGTGCATAAAGCACCT  848

seq1  TCCCTCTCACTCCTTTCACCCACTGAACTGTTGTTACTAATGTCTCTCGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCACTCCTTTCACCCACTGAACTGTTGTTACTAATGTCTCTCGA  898

seq1  CAGAGAAGTAGATGGTACCAGGGGCAGGCTGGATTTGTGCCCACTGAGCC  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGAGAAGTAGATGGTACCAGGGGCAGGCTGGA-TTGTGCCCACTGAGCC  947

seq1  CTGGCCATCCTCGGCAGAGGAGGCAAAAGCAGTCCAGCCTGTGATTTTAC  1000
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  CTGGCCATCCTCGGCAGAGGAG--CAAAGCAGTCCAGCCTGTGATTTTAC  995

seq1  CTTGCCCCTTCCCTGTAGGGGCAGTCAATTAAAGCCAAACAATTTCTGAA  1050
      ||||||||||||||||| |||||||| |||||   ||||||||||||| |
seq2  CTTGCCCCTTCCCTGTAAGGGCAGTC-ATTAA--GCAAACAATTTCTG-A  1041

seq1  CTCTTTTAGAGACTTAGTGATCATAAATTGGAAGTG-TAATCACTCATAA  1099
      ||| ||||||||| || |||||||||    |||||| || ||||||   |
seq2  CTC-TTTAGAGAC-TATTGATCATAA---TGAAGTGTTATTCACTCCATA  1086

seq1  ACACAGTAAACTGTGC  1115
      || |||| ||||||||
seq2  AC-CAGTTAACTGTGC  1101


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