BAC Information

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BAC

Clone NameB6Ng01-308M15
Chromosome18 (Build37)
Map Location 30,197,130 - 30,311,259
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040930, 4930578E11Rik, LOC666073
Downstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308M15.bB6Ng01-308M15.g
ACCGA101201GA101202
length1,0981,201
definitionB6Ng01-308M15.b B6Ng01-308M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,197,130 - 30,198,326)(30,310,080 - 30,311,259)
sequence
gaattccctgtgtagcaaggaaattccaagatattagattagaaataatt
cctagattttgcattttggaaataacattttcggctcagacagcaacttg
caattttccctcggaaatccctggccttgttatgaaactgtgggtagctt
agagatgtgctgatctacaaagtgtaacacagaagggactatttagtggg
atgggataccttgagatctttgactatgattccttgaggatgagacttat
attttttattgggtatttatttcatttacatttccaatgctatcccaaaa
gtcccccacatgatccttcacccactcccccacccacccactcccacttc
ttggcactggcattcccctgtactgaggcatataaagtttgcacgaccaa
tgggcctctctttccactgatggccgactaggccatcttctgattcatat
gcagctagagacacgagctccaggggagtattggttagttcatattgttg
ttccacctatacgattgcagatccattcagctccttgggtactttctcta
gctcctccattgagggccctgtcatcgatccaaaagctgactgtgagtat
ccacttctgtgtttgccaggtcccagcatagtctcacaagagacagccat
atctgggtcctttcagcaaaatcttgctagtgtatgcaatggtgtgagcg
tttggaagctgattatgggatggatccccggatatgtcagtctctagatg
gtccatcctttcgtctcagctccaaactttgtctctgtaactccttccat
gggtgttttgacttatatttttattaaacaagaaggcagacacaatgagg
ataggatcaccaacattacgatggtcctaatttcacaggtttgttttgat
gacaaatgttagaaatgcatagagagagttataaaacataggttagcaaa
taaataaaattcctagtagtattgtgccagtaccctttcaaaccttcata
ttaccagaaaattttgcagaagttcagattgttccaattcacagatgaaa
atggatgggcaaaaaaaatccaaactctgaacaaaggaaatgtctttc

gaattctcagcacccacatggcaactcccaactgtctgtaagtacagtta
caggggatccgacaacttccggcttcttcaggtaccagacatgcacgtgg
tacatatacatatggaagcaacccatccatgcaaaaataaataaatttta
ctcaacaatgataataaaatttcatatgtaattatgcagataggacaaaa
atgatagcctcatacattctgagacttgaccttgagactcctactaccct
ctgatctcaactcaagtcttagaatttgtctcgatctactcctaattatc
tggatgagtgtgtgtctgtgtataggtgtgtgtttctggccacagatacc
aggggaggccagaagaaggcatcagatcttgtcaagctgaattaaagatg
gttgtgaagtgcctgacatgtgtgacaggaaccaccctttgggccactgc
aagagcagtttgctttcttaatgtctctccagcccttacttctccctaac
tctccgattggagtctgtgctccaatgctttataaactgaacttgtgcat
acaaaactagcctcaaacgaactttttccccaccaactcctggttctgct
ggccaggaatagttcagctatcctccgagattgagaaacattctaccctt
tgtgactgaatcagacaaaaataaaacttccccccatctttctccctctc
tcctccttgctctactcctccctttcctgctttttcttctctctcattat
tcctctttctgtctttcttccttgctgtccctttcttccaaaattaattt
aaaacatttcatcaatttaggggtggttagtacagatttttaagattttt
ctatatttaaaatttataaaggggaacataagaaagggtttgggaaattc
caagatccaaatatcaaaatgaccaaacttttttctttaacccaggacat
accaatttacacaagttaccctctctagcacattaaaggaatatactcag
ttgacaaatactacctactgatttctttggaaagattatttaaggattaa
atggagatatggaacaccaccaccacaccaatcccatgttaccacacatg
gtggcatattgtccacacaaaacaccactcacacaaattctggaaaattc
agagggagtcacacactggcctcggatcacttaaaaaacttcagggtgca
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30197130_30198326
seq2: B6Ng01-308M15.b_46_1143

seq1  GAATTCCCTGTGTAGCAAGGAAATTCCAAGATATTAGATTAGAAATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTGTAGCAAGGAAATTCCAAGATATTAGATTAGAAATAATT  50

seq1  CCTAGATTTTGCATTTTGGAAATAACATTTTCGGCTCAGACAGCAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTTTGCATTTTGGAAATAACATTTTCGGCTCAGACAGCAACTTG  100

seq1  CAATTTTCCCTCGGAAATCCCTGGCCTTGTTATGAAACTGTGGGTAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCCCTCGGAAATCCCTGGCCTTGTTATGAAACTGTGGGTAGCTT  150

seq1  AGAGATGTGCTGATCTACAAAGTGTAACACAGAAGGGACTATTTAGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTGCTGATCTACAAAGTGTAACACAGAAGGGACTATTTAGTGGG  200

seq1  ATGGGATACCTTGAGATCTTTGACTATGATTCCTTGAGGATGAGACTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATACCTTGAGATCTTTGACTATGATTCCTTGAGGATGAGACTTAT  250

seq1  ATTTTTTATTGGGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTGGGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAA  300

seq1  GTCCCCCACATGATCCTTCACCCACTCCCCCACCCACCCACTCCCACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCACATGATCCTTCACCCACTCCCCCACCCACCCACTCCCACTTC  350

seq1  TTGGCACTGGCATTCCCCTGTACTGAGGCATATAAAGTTTGCACGACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACTGGCATTCCCCTGTACTGAGGCATATAAAGTTTGCACGACCAA  400

seq1  TGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTCTGATTCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTCTGATTCATAT  450

seq1  GCAGCTAGAGACACGAGCTCCAGGGGAGTATTGGTTAGTTCATATTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAGAGACACGAGCTCCAGGGGAGTATTGGTTAGTTCATATTGTTG  500

seq1  TTCCACCTATACGATTGCAGATCCATTCAGCTCCTTGGGTACTTTCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTATACGATTGCAGATCCATTCAGCTCCTTGGGTACTTTCTCTA  550

seq1  GCTCCTCCATTGAGGGCCCTGTCATCGATCCAAAAGCTGACTGTGAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCATTGAGGGCCCTGTCATCGATCCAAAAGCTGACTGTGAGTAT  600

seq1  CCACTTCTGTGTTTGCCAGGTCCCAGCATAGTCTCACAAGAGACAGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTGTGTTTGCCAGGTCCCAGCATAGTCTCACAAGAGACAGCCAT  650

seq1  ATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTGAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTGAGCG  700

seq1  TTTGGAAGCTGATTATGGGATGGATCCCCGGATATGTCAGTCTCTAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGCTGATTATGGGATGGATCCCCGGATATGTCAGTCTCTAGATG  750

seq1  GTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCAT  800

seq1  GGGTGTTTTGACTTATATTTTTATTAAACAAGAAGGCAGACACAATGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTTGACTTATATTTTTATTAAACAAGAAGGCAGACACAATGAGG  850

seq1  ATAGGATCACCAACATTACGATGGTCCTAATTTCACAGGTTTGTTTTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAGGATCACCAACATTACGATGGTCCTAATTTCACAGGTTTGTTTTGA-  899

seq1  TGACAAATGTTAGAAATGCAATAGAGAGAGTTATAAAACATAAGGTTAGC  950
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  TGACAAATGTTAGAAATGC-ATAGAGAGAGTTATAAAACAT-AGGTTAGC  947

seq1  AAATAAATAAAATTCCTAGTAGTA-TGTGCCAGTACCCTTTCAAAACCTC  999
      |||||||||||||||||||||||| |||||||||||||||||||| | ||
seq2  AAATAAATAAAATTCCTAGTAGTATTGTGCCAGTACCCTTTCAAACCTTC  997

seq1  ATATTACCAG-AAATTTTGCAG-AGTTCAGA-TGTTCCAAATCACAGATG  1046
      |||||||||| ||||||||||| |||||||| |||||||| |||||||||
seq2  ATATTACCAGAAAATTTTGCAGAAGTTCAGATTGTTCCAATTCACAGATG  1047

seq1  -AAATTGAT-GGCAAAAAAA--TCAAAC-CTGAACAAAGG-AATGTC-TT  1089
       |||| ||| ||||||||||   ||||| ||||||||||| |||||| ||
seq2  AAAATGGATGGGCAAAAAAAATCCAAACTCTGAACAAAGGAAATGTCTTT  1097

seq1  CCAAGAGATGTAATCAGATAGTGCTCTGGACATCTACTTGGATCCCATAA  1139
      |                                                 
seq2  C-------------------------------------------------  1098

seq1  TCTCATCTGAGTCAAGACCTGAGACAGTACCAATTCCTTCACTGATATAA  1189
                                                        
seq2  --------------------------------------------------  1098

seq1  TGTCTTTC  1197
              
seq2  --------  1098


seq1: chr18_30310080_30311259
seq2: B6Ng01-308M15.g_68_1268 (reverse)

seq1  ATGCA--CTGAAGTTTTTTAAGTTGATCGAAG--CAGTGTGTGACTTCTC  46
      |||||  ||||||||||||||| |||||  ||  ||||||||||| || |
seq2  ATGCACCCTGAAGTTTTTTAAG-TGATCCGAGGCCAGTGTGTGAC-TCCC  48

seq1  TTTATATTTTTCAG-ATTTGTGTGAGTGGGTGTGTGTGTGGAC-ATATGC  94
      | |  ||||| ||| ||||||||||||||   | ||||||||| ||||||
seq2  TCTGAATTTTCCAGAATTTGTGTGAGTGGTGTTTTGTGTGGACAATATGC  98

seq1  --ACATGTGTG--TACAT-GGATGTGTGTG-----TGTGTTCATTATCT-  133
         ||||||||   |||| ||||  |||||      ||||||  ||||| 
seq2  CACCATGTGTGGTAACATGGGATTGGTGTGGTGGTGGTGTTCCATATCTC  148

seq1  CATTTAATCC-TAAATTATCTTT-CAAAGAAATTCAGTAGGTAGTATTTT  181
      |||||||||| ||||| |||||| |||||||| ||||||||||||| |||
seq2  CATTTAATCCTTAAATAATCTTTCCAAAGAAA-TCAGTAGGTAGTA-TTT  196

seq1  GTCAACTGAGTATATTCCTTTAATGTGCTAGAGAGGGTAACTTGTGT-AA  230
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCAACTGAGTATATTCCTTTAATGTGCTAGAGAGGGTAACTTGTGTAAA  246

seq1  TTGGTATGTCCTGGGTTAAAG-AAAAAGTTTGGTCATTTTGATATTTGGA  279
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGGTATGTCCTGGGTTAAAGAAAAAAGTTTGGTCATTTTGATATTTGGA  296

seq1  TCTTGGAATTT-CCAAACCCTTTCTTATGTT-CCCTTTATAAATTTTAAA  327
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TCTTGGAATTTCCCAAACCCTTTCTTATGTTCCCCTTTATAAATTTTAAA  346

seq1  TATAGAAAAATCTTAAAAATCTGTACTAACCA-CCCTAAATTGATG-AAT  375
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  TATAGAAAAATCTTAAAAATCTGTACTAACCACCCCTAAATTGATGAAAT  396

seq1  GTTTTAAATTAATTTTGGAAGAAAGGGACAGCAAGGAAGAAAGACAGAAA  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATTAATTTTGGAAGAAAGGGACAGCAAGGAAGAAAGACAGAAA  446

seq1  GAGGAATAATGAGAGAGAAGAAAAAGCAGGAAAGGGAGGAGTAGAGCAAG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATAATGAGAGAGAAGAAAAAGCAGGAAAGGGAGGAGTAGAGCAAG  496

seq1  GAGGAGAGAGGGAGAAAGATGGGGGGAAGTTTTATTTTTGTCTGATTCAG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGAGGGAGAAAGATGGGGGGAAGTTTTATTTTTGTCTGATTCAG  546

seq1  TCACAAAGGGTAGAATGTTTCTCAATCTCGGAGGATAGCTGAACTATTCC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGGGTAGAATGTTTCTCAATCTCGGAGGATAGCTGAACTATTCC  596

seq1  TGGCCAGCAGAACCAGGAGTTGGTGGGGAAAAAGTTCGTTTGAGGCTAGT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCAGAACCAGGAGTTGGTGGGGAAAAAGTTCGTTTGAGGCTAGT  646

seq1  TTTGTATGCACAAGTTCAGTTTATAAAGCATTGGAGCACAGACTCCAATC  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGCACAAGTTCAGTTTATAAAGCATTGGAGCACAGACTCCAATC  696

seq1  GGAGAGTTAGGGAGAAGTAAGGGCTGGAGAGACATTAAGAAAGCAAACTG  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTAGGGAGAAGTAAGGGCTGGAGAGACATTAAGAAAGCAAACTG  746

seq1  CTCTTGCAGTGGCCCAAAGGGTGGTTCCTGTCACACATGTCAGGCACTTC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAGTGGCCCAAAGGGTGGTTCCTGTCACACATGTCAGGCACTTC  796

seq1  ACAACCATCTTTAATTCAGCTTGACAAGATCTGATGCCTTCTTCTGGCCT  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCTTTAATTCAGCTTGACAAGATCTGATGCCTTCTTCTGGCCT  846

seq1  CCCCTGGTATCTGTGGCCAGAAACACACACCTATACACAGACACACACTC  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGTATCTGTGGCCAGAAACACACACCTATACACAGACACACACTC  896

seq1  ATCCAGATAATTAGGAGTAGATCGAGACAAATTCTAAGACTTGAGTTGAG  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATAATTAGGAGTAGATCGAGACAAATTCTAAGACTTGAGTTGAG  946

seq1  ATCAGAGGGTAGTAGGAGTCTCAAGGTCAAGTCTCAGAATGTATGAGGCT  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGGTAGTAGGAGTCTCAAGGTCAAGTCTCAGAATGTATGAGGCT  996

seq1  ATCATTTTTGTCCTATCTGCATAATTACATATGAAATTTTATTATCATTG  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTGTCCTATCTGCATAATTACATATGAAATTTTATTATCATTG  1046

seq1  TTGAGTAAAATTTATTTATTTTTGCATGGATGGGTTGCTTCCATATGTAT  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAAAATTTATTTATTTTTGCATGGATGGGTTGCTTCCATATGTAT  1096

seq1  ATGTACCACGTGCATGTCTGGTACCTGAAGAAGCCGGAAGTTGTCGGATC  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCACGTGCATGTCTGGTACCTGAAGAAGCCGGAAGTTGTCGGATC  1146

seq1  CCCTGTAACTGTACTTACAGACAGTTGGGAGTTGCCATGTGGGTGCTGAG  1175
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAACTGTACTTACAGACAGTTGGGAGTTGCCATGTGGGTGCTGAG  1196

seq1  AATTC  1180
      |||||
seq2  AATTC  1201


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