BAC Information

Click to search

BAC

Clone NameB6Ng01-308O23
Chromosome18 (Build37)
Map Location 69,200,381 - 69,338,426
singlet/doubletdoublet
Overlap genenone
Upstream geneD18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4, Ccdc68, Rab27b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308O23.bB6Ng01-308O23.g
ACCGA101303GA101304
length1,1141,156
definitionB6Ng01-308O23.b B6Ng01-308O23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,200,381 - 69,201,010)(69,337,281 - 69,338,426)
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctgagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaggatggcgctgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgtcgcccagaag
ctctgcgactctcgcccgtcccagaaacggctggcactctgtattccaca
cggtcacccgtgcagtctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacaaacctctcaggccaggcagacccccgtgc
tctcaccaggaaggtggccggctgtctggagctgaagatggcgccgccca
gaagctctgcgactctcgcccgtcctagaaacggctggcactctgtattc
cacacggtcacccgtgcagcctgccctccgcggagtcccggagccaagaa
gctcccgccggcgcctgtgccacaaacctctcagccgggcagacccccgt
gctctcaccaggaagtgccgctgtctggacgaaatttgatatttgacagg
tgtgtgagattataaaaatgtgtcagtcctgggtagcctccatctgtaaa
aggcagtagtctataatttgtcagctatgttagaagtgattaacttcctg
ccattcaaataaga

gaattctattattgctaaaatatcataatcattggcacaaagttcctaat
acattccttccatgggggcatcccattttcaattccagattctgatgtat
tctaccccgtatgtacgctgtcacattctgttaattgtttgttattctta
ttgatgtctataattccaaagccttggaattatctactttctttctactt
tactcatttctgttcttagttttactatttaatttcatttttagtttcat
ttactctatttttcatttccttcaggtgggaaattaggtaactgacaaga
ttctgcatcttaaatgcttagcacaagtacttaaattagcaaatttcccc
ctagataccatttaaacggcttcctataaattcaacatgttgtattttca
ttttctttccatgcaaaaaaaccagtttttgtctctttttaaagatttta
ttgaacatatggactattaaaattatataattttcattttcagaatttca
aggattagcctgggcttctggcacacacatactctctgtgttcagaaggt
tgaaccaggaggcgaatcgtgagtttgaagtcagcttgcaccacataatt
agtccctgtacccctctgctccccacaagacaaattcagtggtgatttta
aatctctttttgttgtttctcattgatctgattatttcaatgtgagttgg
ctttcctcttctgctattttttttttaatctgtagcttcctggagttatt
ggtttctctctcattaaaaaattattctctctctttcccactccatctgt
ctcccctgtgtggatactaatatatattttaaaggcaggttaagattaac
ctgtattgtaggggtttttataaatcatattgtttataaatcataatctt
ggttatatactgaagtttgtattgaattatctgattcaactttaagtatt
tatttttacttatgtgtattgtggtggtgcatggtgcatatgtaaggtgt
gcttggttgtctgtatgcccacagtgccacaaggacaacttagaagtgtt
tcaaggtttcctcaaaccgaacttatgggcacttatgagctgcctgactt
ggggtgctgcaccgaacctggtctttctgcctaagcacagtgtctcttcg
ctgccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69200381_69201010
seq2: B6Ng01-308O23.b_539_1159

seq1  AGGAGGCCGGCCGTCTGGAGCTGAGGATGGCGCTGCCTCAGAAGCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCGGCCGTCTGGAGCTGAGGATGGCGCTGCCTCAGAAGCTCTGT  50

seq1  GGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGCGTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGCGTCGC  100

seq1  CCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTA  150

seq1  TTCCACACGGTCACCCGTGCAGTCTGCCCTCCGCGGAGTCCCGGAGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACGGTCACCCGTGCAGTCTGCCCTCCGCGGAGTCCCGGAGCCAA  200

seq1  GAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCAGGCAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCAGGCAGACC  250

seq1  CCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCG  300

seq1  CCGCCCAGAAGCTCTGCGACTCTCGCCCGTCCTAGAAACGGCTGGCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCAGAAGCTCTGCGACTCTCGCCCGTCCTAGAAACGGCTGGCACTC  350

seq1  TGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAG  400

seq1  CCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCGGGCA  450
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  CCAAGAA-GCTCCCGCCGGCGCCTGTGCCACAAACCTCTCA-GCCGGGCA  448

seq1  GACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGACGAAATTTT  500
      ||||||||||||||||||||||| |||  | ||||||||||||||| |||
seq2  GACCCCCGTGCTCTCACCAGGAA-GTG--CCGCTGTCTGGACGAAA-TTT  494

seq1  GATATTTGACAGAGTGTTGTGAGATTAT-AAAATGTGTCAGTCCTGGGTA  549
      |||||||||||| ||| ||||||||||| |||||||||||||||||||||
seq2  GATATTTGACAG-GTG-TGTGAGATTATAAAAATGTGTCAGTCCTGGGTA  542

seq1  GCCTCCATCTGGTAAAAGGCAGTAGTCTATAATTTTGTCAGCTATGTTAG  599
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  GCCTCCATCT-GTAAAAGGCAGTAGTCTATAA-TTTGTCAGCTATGTTAG  590

seq1  -AGTGAATTTACTTCCTGCCATTCACATAAGA  630
       |||| ||| ||||||||||||||| ||||||
seq2  AAGTG-ATTAACTTCCTGCCATTCAAATAAGA  621


seq1: chr18_69337281_69338426
seq2: B6Ng01-308O23.g_75_1224 (reverse)

seq1  CGGCAGCGAAGAGCACCTGCTGCTTTAGCAGAAGAACCAGGTTTGGGTTC  50
      |||||||||||||   ||| |||||  ||||||  |||||||| ||  | 
seq2  CGGCAGCGAAGAGACACTG-TGCTTAGGCAGAAAGACCAGGTTCGG--TG  47

seq1  CAGCA-CCCAGGTCAGGCAGCTCATAATTGCCCATAAGTTCGGTTTGAGG  99
      ||||| |||| |||||||||||||||| ||||||||||||||||||||||
seq2  CAGCACCCCAAGTCAGGCAGCTCATAAGTGCCCATAAGTTCGGTTTGAGG  97

seq1  AAACCTGATACCACTTTCTAG-TGTCCTTGTGCAACTGTGCGCATACAGA  148
      ||||||   | |||||   || ||||||||||  |||||| |||||||||
seq2  AAACCTTGAAACACTTCTAAGTTGTCCTTGTGGCACTGTGGGCATACAGA  147

seq1  CAACCAAGCACA-CGTACATATGCA-CATGCA-CACCAC-ATACACATAA  194
      |||||||||||| | |||||||||| |||||| |||||| ||||||||||
seq2  CAACCAAGCACACCTTACATATGCACCATGCACCACCACAATACACATAA  197

seq1  GTAAAAATAAATACTTAAAGTGGAATCAGATAATTCAATACAAACTTCAG  244
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTAAAAATAAATACTTAAAGTTGAATCAGATAATTCAATACAAACTTCAG  247

seq1  TATATAACCAAGATTATGATTTATAAACAATATGATTTATAAAAACCCCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACCAAGATTATGATTTATAAACAATATGATTTATAAAAACCCCT  297

seq1  ACAATACAGGTTAATCTTAACCTGCCTTTAAAATATATATTAGTATCCAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAGGTTAATCTTAACCTGCCTTTAAAATATATATTAGTATCCAC  347

seq1  ACAGGGGAGACAGATGGAGTGGGAAAGAGAGAGAATAATTTTTTAATGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAGACAGATGGAGTGGGAAAGAGAGAGAATAATTTTTTAATGAG  397

seq1  AGAGAAACCAATAACTCCAGGAAGCTACAGATT-AAAAAAAAATAGCAGA  443
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAGAAACCAATAACTCCAGGAAGCTACAGATTAAAAAAAAAATAGCAGA  447

seq1  AGAGGAAAGCCAACTCACATTGAAATAATCAGATCAATGAGAAACAACAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGCCAACTCACATTGAAATAATCAGATCAATGAGAAACAACAA  497

seq1  AAAGAGATTTAAAATCACCACTGAATTTGTCTTGTGGGGAGCAGAGGGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATTTAAAATCACCACTGAATTTGTCTTGTGGGGAGCAGAGGGGT  547

seq1  ACAGGGACTAATTATGTGGTGCAAGCTGACTTCAAACTCACGATTCGCCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACTAATTATGTGGTGCAAGCTGACTTCAAACTCACGATTCGCCT  597

seq1  CCTGGTTCAACCTTCTGAACACAGAGAGTATGTGTGTGCCAGAAGCCCAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTCAACCTTCTGAACACAGAGAGTATGTGTGTGCCAGAAGCCCAG  647

seq1  GCTAATCCTTGAAATTCTGAAAATGAAAATTATATAATTTTAATAGTCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCCTTGAAATTCTGAAAATGAAAATTATATAATTTTAATAGTCCA  697

seq1  TATGTTCAATAAAATCTTTAAAAAGAGACAAAAACTGGTTTTTTTGCATG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAATAAAATCTTTAAAAAGAGACAAAAACTGGTTTTTTTGCATG  747

seq1  GAAAGAAAATGAAAATACAACATGTTGAATTTATAGGAAGCCGTTTAAAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAATGAAAATACAACATGTTGAATTTATAGGAAGCCGTTTAAAT  797

seq1  GGTATCTAGGGGGAAATTTGCTAATTTAAGTACTTGTGCTAAGCATTTAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTAGGGGGAAATTTGCTAATTTAAGTACTTGTGCTAAGCATTTAA  847

seq1  GATGCAGAATCTTGTCAGTTACCTAATTTCCCACCTGAAGGAAATGAAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAATCTTGTCAGTTACCTAATTTCCCACCTGAAGGAAATGAAAA  897

seq1  ATAGAGTAAATGAAACTAAAAATGAAATTAAATAGTAAAACTAAGAACAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTAAATGAAACTAAAAATGAAATTAAATAGTAAAACTAAGAACAG  947

seq1  AAATGAGTAAAGTAGAAAGAAAGTAGATAATTCCAAGGCTTTGGAATTAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTAAAGTAGAAAGAAAGTAGATAATTCCAAGGCTTTGGAATTAT  997

seq1  AGACATCAATAAGAATAACAAACAATTAACAGAATGTGACAGCGTACATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCAATAAGAATAACAAACAATTAACAGAATGTGACAGCGTACATA  1047

seq1  CGGGGTAGAATACATCAGAATCTGGAATTGAAAATGGGATGCCCCCATGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTAGAATACATCAGAATCTGGAATTGAAAATGGGATGCCCCCATGG  1097

seq1  AAGGAATGTATTAGGAACTTTGTGCCAATGATTATGATATTTTAGCAATA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGTATTAGGAACTTTGTGCCAATGATTATGATATTTTAGCAATA  1147

seq1  ATA  1146
      |||
seq2  ATA  1150


| Home | SequenceCutter | Blast | Download |