BAC Information

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BAC

Clone NameB6Ng01-310A16
Chromosome18 (Build37)
Map Location 41,720,442 - 41,721,621
singlet/doubletsinglet
Overlap genenone
Upstream geneEG225416, LOC677182
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310A16.bB6Ng01-310A16.g
ACCGA102130GA102131
length1,2011,174
definitionB6Ng01-310A16.b B6Ng01-310A16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtccattgatgttaattgatataaaggaaaagcgattgttatt
tcccgttatttttgttgttagaggtagcgtttgtgttgctatcttctttt
gggtttgttgaaagattactttcttgcttttctctagggtgtagttttcc
tccttgtgttgggattttccatcgataatactttgtaaggctggatttgt
ggaaacatattgtgtaaatttggttttgtcatgggatatcttgttttctc
tgtctatggtaattgagagttttgctaggtatagtagcctgggctggcat
ttttgttctcttagggtctgtataacatctgcctaggatcttctagcttt
catagtctctggtgagaagtctggtataattctgataggtctgcctttat
atgttacttgacctttttcccttactgcttttaatattctctctttgttt
aattcattttgtgttttgattattatgtgacaggaggaatttcttttctg
gtccagtctatttggagtgctgcaggcttcttgtatgttcatgggcatct
ctttctttaagttagggaacttttcttctataattttgttgaagatgttt
actagccctttacgttgggaatcttcgctctcttctatacctattatcct
taggcttgttcttctcattatgtcctggattttctggatatttggggtta
agagctttttgcattttgcattttctttgactgttgtgtcaatgtttcta
tggtatcttcttcacctgagattctctcttctatctcttgtattctgttg
gtgatgcttgcatctatgactcctgctctctttcctaggttttctaactc
caggattgtctccccttgttatttcttattgtttctatttccacttttat
atcctggatggttttgtttaattccttcacctgttttattgggttttcct
gtattctttaaggacttttgtttttcctctttaagatctttcatctgttt
acctgtgtctgttatttctttaggggttatttatgtttttcttgaagtcc
tctattcattgtcatgagagtaattttagaatctgagtcttgcttttcgg
tgtgatcatgttattccaggatttggctatgtggggcatttggctctgat
gagtcaggaatcttggtcggttgctatgttctaaaattgccctctttgca
c
gaattcaggtgacagcagatactggcaaggatgtggagaaagaggaacac
tcctccattgctggttggattgcaagcttgtacaaccagtctggaagtca
gtctggagattcctcagaaatttggacataatactaccggaagatccagc
aataccactcctgggcatgtacccagaagatgttccaacttgtaatacgg
acacacgctccactatgttcattgcagccttatttataatagccagaagc
tggaaagaacccagatgtccctcaacagaagaatggatacagaaaatgtg
gtacatttacacaatggaatactactcagctattaaaaacaatggattta
tgaaattcttggacaaatggatggatctggaggctatcatccttagtgag
gtaacccaatcacaagaaaaggatgcatcttaagtaactgctgttgtctg
aatattgttttaaacttctccaagacaccggggtctatcacagaccccat
ccttggacacagcttttaaaccatggatctgctacaataattatgcttgt
aaagcaaaagaaaatttaaaataaacatgagcactcctaatttaagatat
tatgaaaggagcctggccaagtagcctcaagatattgaatgaaatacttt
aacacacacacacacacacacacacacacacaggaacaatacttttcttc
ttttgttaaaatataaaatagtagttcagcctttccaacttgatactgat
tcagcatcctctcattagacaaaggtcatagtctataattaaatttaaaa
acagtcattaaaatcattcgtgtttatatatgataaataacattgtgttc
atacattaatatgcaagtaaagtttagaaaatctatcttctgtgtaaaat
gcttatagtgattaaaataatcctttactatcagtagattggagcaaata
aatcatatttaagtgagattatccatgtctcaaagccaatgcaccgcctg
ccaatagatcataccatgcttatggttttttcttcctaaacgagacagat
tataaactttagtgtgcatgcatttcctcaggaagagattgctaaaacat
aaatttttatacgaaaaaggcctcaatttactagtgtgaccaggagaccg
aatgttctattaaataaccatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_41720442_41721621
seq2: B6Ng01-310A16.g_68_1241

seq1  GAATTCAGGTGACAGCAGATACTGGCAAGGATGTGGAGAAAGAGGAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGACAGCAGATACTGGCAAGGATGTGGAGAAAGAGGAACAC  50

seq1  TCCTCCATTGCTGGTTGGATTGCAAGCTTGTACAACCAGTCTGGAAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTGCTGGTTGGATTGCAAGCTTGTACAACCAGTCTGGAAGTCA  100

seq1  GTCTGGAGATTCCTCAGAAATTTGGACATAATACTACCGGAAGATCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGATTCCTCAGAAATTTGGACATAATACTACCGGAAGATCCAGC  150

seq1  AATACCACTCCTGGGCATGTACCCAGAAGATGTTCCAACTTGTAATACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACTCCTGGGCATGTACCCAGAAGATGTTCCAACTTGTAATACGG  200

seq1  ACACACGCTCCACTATGTTCATTGCAGCCTTATTTATAATAGCCAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGCTCCACTATGTTCATTGCAGCCTTATTTATAATAGCCAGAAGC  250

seq1  TGGAAAGAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAATGTG  300

seq1  GTACATTTACACAATGGAATACTACTCAGCTATTAAAAACAATGGATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTACACAATGGAATACTACTCAGCTATTAAAAACAATGGATTTA  350

seq1  TGAAATTCTTGGACAAATGGATGGATCTGGAGGCTATCATCCTTAGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCTTGGACAAATGGATGGATCTGGAGGCTATCATCCTTAGTGAG  400

seq1  GTAACCCAATCACAAGAAAAGGATGCATCTTAAGTAACTGCTGTTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCAATCACAAGAAAAGGATGCATCTTAAGTAACTGCTGTTGTCTG  450

seq1  AATATTGTTTTAAACTTCTCCAAGACACCGGGGTCTATCACAGACCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTTTTAAACTTCTCCAAGACACCGGGGTCTATCACAGACCCCAT  500

seq1  CCTTGGACACAGCTTTTAAACCATGGATCTGCTACAATAATTATGCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGACACAGCTTTTAAACCATGGATCTGCTACAATAATTATGCTTGT  550

seq1  AAAGCAAAAGAAAATTTAAAATAAACATGAGCACTCCTAATTTAAGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAAGAAAATTTAAAATAAACATGAGCACTCCTAATTTAAGATAT  600

seq1  TATGAAAGGAGCCTGGCCAAGTAGCCTCAAGATATTGAATGAAATACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGGAGCCTGGCCAAGTAGCCTCAAGATATTGAATGAAATACTTT  650

seq1  AACACACACACACACACACACACACACACACAGGAACAATACTTTTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACACACACACACACACACACACACAGGAACAATACTTTTCTTC  700

seq1  TTTTGTTAAAATATAAAATAGTAGTTCAGCCTTTCCAACTTGATACTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAAAATATAAAATAGTAGTTCAGCCTTTCCAACTTGATACTGAT  750

seq1  TCAGCATCCTCTCATTAGACAAAGGTCATAGTCTATAATTAAATTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCCTCTCATTAGACAAAGGTCATAGTCTATAATTAAATTTAAAA  800

seq1  ACAGTCATTAAAATCATTCGTGTTTATATATGATAAATAACATTGTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATTAAAATCATTCGTGTTTATATATGATAAATAACATTGTGTTC  850

seq1  ATACATTAATATGCAAGTAAAGTTTAGAAAATCTATCTTCTGTGTAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAATATGCAAGTAAAGTTTAGAAAATCTATCTTCTGTGTAAAAT  900

seq1  GCTTATAGTGATTAAAATAATCCTTTACTATCAGGTAGATTGGAGCAAAT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTTATAGTGATTAAAATAATCCTTTACTATCA-GTAGATTGGAGCAAAT  949

seq1  AAATCATATTTAAGTGAGATTATCCATGTCTCAAAGCCAATGCA-CGCCT  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATCATATTTAAGTGAGATTATCCATGTCTCAAAGCCAATGCACCGCCT  999

seq1  GCC-ATAGATCATACCATGCTTATGGGTTTTTC-TCCTAAACGAGAACAG  1047
      ||| |||||||||||||||||||||| |||||| ||||||||||| ||||
seq2  GCCAATAGATCATACCATGCTTATGGTTTTTTCTTCCTAAACGAG-ACAG  1048

seq1  AATTATAAAACTTTAGTGTGCATGCA-TTCCTCCAAGAGAGATGGTTAAA  1096
       ||||| ||||||||||||||||||| ||||||    |||||| | ||||
seq2  -ATTAT-AAACTTTAGTGTGCATGCATTTCCTCAGGAAGAGATTGCTAAA  1096

seq1  ACATAAA-TTTTATACCACAAAAGCCTCAAATTTACTAAGTGTGAACAAA  1145
      ||||||| |||||||| | ||| ||||| |||||||| ||||||| ||  
seq2  ACATAAATTTTTATACGAAAAAGGCCTC-AATTTACT-AGTGTGACCA--  1142

seq1  GGGAGACCCAGAATGTTCTATTAAATAACCATGTG  1180
       |||||||  |||||||||||||||||||||||||
seq2  -GGAGACC--GAATGTTCTATTAAATAACCATGTG  1174