BAC Information

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BAC

Clone NameB6Ng01-311C07
Chromosome18 (Build37)
Map Location 39,652,115 - 39,777,555
singlet/doubletdoublet
Overlap genenone
Upstream geneSpry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26, Nr3c1
Downstream genePabpc2, LOC100041939, Yipf5, Kctd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311C07.bB6Ng01-311C07.g
ACCGA102934GA102935
length1,1311,130
definitionB6Ng01-311C07.b B6Ng01-311C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,776,442 - 39,777,555)(39,652,115 - 39,653,240)
sequence
gaattcattcagtgacataaacgttataagtgattcatgggcctccggtt
agcagtcaaggaggaaaattgtatttatgtaatttacagatatcatataa
acaccgtgtcttgttatctgcatgcccgtgttccttacatcttaatcaca
gaagcaacaattgctcctaataccactaacaagtttccaacgtgccaaag
ataaattgctcactaaacaaatgtttaaacacattagcggtgacccactg
agtgttacgatgcacaccctgccacccagcagccgccttccttcatgttc
accttgctgttcgtctcccgcagtgaaacagcctgtggtatttgggacta
atccaaatagataggaggaagcaggaaaacacacacatggaaacttaagg
agatgcaatactggaaggtcccatcactcactgctgactagtactacaca
gctgggattgcattgttgatcatgtaccagataattcaaatagctgcaga
gtggagaaaggttgataaaaaacatatggggagtctcagatcttaaaaca
gtcaagatcatacaccaagaccagattggagttctaacagtgcccggtat
atgtccacccagaagccagcttcaggagagatgagtacggcataatcctg
atgataaagttataattcaatatagagacaaaggcctttaagaattactt
tatcttttggtattacaaaatctatgctgttcttgcctagagtgccaaat
tcatggaacatatgttttgtgattcctgagcaaggatatcttactgagat
atattcatgagttctaggggaattggtatcaatcatacacactataggca
ttcattctaagatgtctgacttaaaataactcattttctaaagcctgaac
tattttacatggactttctaccataagaataattctctacatttatcttt
ttttaatgtcatatatcctctttgggattgtatatctatatatctgtatg
tatatctttatgaatgatcaatatagaggtcacttatatttataggaagg
atacttacaggattcttcttcttcctggtctggtaaaaataaggcctctc
ttcctctggggaatgccaccaaggtgctcag

gaattcctacttaatatttttccttttccttttttttgcatgcctagtaa
ttcttaatgtagaagaatacttcattttaagttttaaatttcagttccaa
atattttaaattgaacagaaataggaatttttccagttttttctctttag
tggcctaactatgccttagtctattagttcaacagaaaaacatctcatgc
tttaatccatactgctttaaaaattagcctaaactctcaacaactaatca
tatctacacagtaagaaaaataattatgaaaataatttgcttaacattca
ttgactcttctgctcagtttgctggaagtgttgaataaaatagatatttt
attatacttcttgggaagtactggggatcctatattctaggaaagtactc
actaggccaatgaactatgtcgctagttgtcttagtcaaggttactattg
aggtgatgaaacaccataaccaagagcaacatggggaggaaagggtttat
ttcattcacagttccatataaacagttcattattaaaagtagtaaggaca
cgacttcaaacagcaggaatttggaggcaggagctaatcctgaagccatg
aaggaatattgcttactggtttgctctgccttctttcttatagaccccag
gatcatcagctcagggaaagcaccatccacaatgggcttggaggcatttt
tcttaactgaggtttctttcacttaacttaccttaacttgtatcaagttg
acataaaactgtccgacatgttagtccgactttgatttttcagcatgagg
aactggaacttacagaacttgatccaatgtcacatagctcctcagggtta
agatggaatccagtaatgttaagagagattttcctcatggatccataatt
tacatgaaagggcattatgaattcttgaaagacttaagcactcatggaaa
tttaagcactgaatttcaaagaaatttaatagtttttttttttaaaacag
agaaatgtccatttgtacacagaatgaggttagattttgataacacgaat
tcttattatagtaataacttataggcattctgtccaccagaacctatcaa
tatttttaagcgttacgtcttaacttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_39776442_39777555
seq2: B6Ng01-311C07.b_48_1178 (reverse)

seq1  CTGAGCACTGT----GCA-TCCCCAG----AGAGAGG-CTTATTTT--AC  38
      ||||||||  |    ||| |||||||    ||||||| ||||||||   |
seq2  CTGAGCACCTTGGTGGCATTCCCCAGAGGAAGAGAGGCCTTATTTTTACC  50

seq1  AGA-CAGG-AGAAGAAGA--TCTGTAAGTATCCCTTCTAT-AATAT-AGT  82
      ||| |||| |||||||||   |||||||||||| | |||| ||||| |||
seq2  AGACCAGGAAGAAGAAGAATCCTGTAAGTATCCTTCCTATAAATATAAGT  100

seq1  GACCTCTATATTGATTCATTCATAAAGATATACATACAGATATATAGATA  132
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACCTCTATATTGA-TCATTCATAAAGATATACATACAGATATATAGATA  149

seq1  TACAAT-CCAAAGAGGATATATGACATTTAAAAAAAGATAAATGTAGAGA  181
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  TACAATCCCAAAGAGGATATATGACA-TTAAAAAAAGATAAATGTAGAGA  198

seq1  ATTATTCTTATGGTAGAAAGTCCATGTAAAATAGTTCAGGCTTTAGAAAA  231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTATGGTAGAAAGTCCATGTAAAATAGTTCAGGCTTTAGAAAA  248

seq1  TGAGTTATTTTAAGTCAGACATCTTAGAATGAATGCCTATAGTGTGTATG  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATTTTAAGTCAGACATCTTAGAATGAATGCCTATAGTGTGTATG  298

seq1  ATTGATACCAATTCCCCTAGAACTCATGAATATATCTCAGTAAGATATCC  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATACCAATTCCCCTAGAACTCATGAATATATCTCAGTAAGATATCC  348

seq1  TTGCTCAGGAATCACAAAACATATGTTCCATGAATTTGGCACTCTAGGCA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGGAATCACAAAACATATGTTCCATGAATTTGGCACTCTAGGCA  398

seq1  AGAACAGCATAGATTTTGTAATACCAAAAGATAAAGTAATTCTTAAAGGC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCATAGATTTTGTAATACCAAAAGATAAAGTAATTCTTAAAGGC  448

seq1  CTTTGTCTCTATATTGAATTATAACTTTATCATCAGGATTATGCCGTACT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTCTATATTGAATTATAACTTTATCATCAGGATTATGCCGTACT  498

seq1  CATCTCTCCTGAAGCTGGCTTCTGGGTGGACATATACCGGGCACTGTTAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCTGAAGCTGGCTTCTGGGTGGACATATACCGGGCACTGTTAG  548

seq1  AACTCCAATCTGGTCTTGGTGTATGATCTTGACTGTTTTAAGATCTGAGA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAATCTGGTCTTGGTGTATGATCTTGACTGTTTTAAGATCTGAGA  598

seq1  CTCCCCATATGTTTTTTATCAACCTTTCTCCACTCTGCAGCTATTTGAAT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATATGTTTTTTATCAACCTTTCTCCACTCTGCAGCTATTTGAAT  648

seq1  TATCTGGTACATGATCAACAATGCAATCCCAGCTGTGTAGTACTAGTCAG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGTACATGATCAACAATGCAATCCCAGCTGTGTAGTACTAGTCAG  698

seq1  CAGTGAGTGATGGGACCTTCCAGTATTGCATCTCCTTAAGTTTCCATGTG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTGATGGGACCTTCCAGTATTGCATCTCCTTAAGTTTCCATGTG  748

seq1  TGTGTTTTCCTGCTTCCTCCTATCTATTTGGATTAGTCCCAAATACCACA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCCTGCTTCCTCCTATCTATTTGGATTAGTCCCAAATACCACA  798

seq1  GGCTGTTTCACTGCGGGAGACGAACAGCAAGGTGAACATGAAGGAAGGCG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTCACTGCGGGAGACGAACAGCAAGGTGAACATGAAGGAAGGCG  848

seq1  GCTGCTGGGTGGCAGGGTGTGCATCGTAACACTCAGTGGGTCACCGCTAA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGGTGGCAGGGTGTGCATCGTAACACTCAGTGGGTCACCGCTAA  898

seq1  TGTGTTTAAACATTTGTTTAGTGAGCAATTTATCTTTGGCACGTTGGAAA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAAACATTTGTTTAGTGAGCAATTTATCTTTGGCACGTTGGAAA  948

seq1  CTTGTTAGTGGTATTAGGAGCAATTGTTGCTTCTGTGATTAAGATGTAAG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAGTGGTATTAGGAGCAATTGTTGCTTCTGTGATTAAGATGTAAG  998

seq1  GAACACGGGCATGCAGATAACAAGACACGGTGTTTATATGATATCTGTAA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGGGCATGCAGATAACAAGACACGGTGTTTATATGATATCTGTAA  1048

seq1  ATTACATAAATACAATTTTCCTCCTTGACTGCTAACCGGAGGCCCATGAA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATAAATACAATTTTCCTCCTTGACTGCTAACCGGAGGCCCATGAA  1098

seq1  TCACTTATAACGTTTATGTCACTGAATGAATTC  1114
      |||||||||||||||||||||||||||||||||
seq2  TCACTTATAACGTTTATGTCACTGAATGAATTC  1131


seq1: chr18_39652115_39653240
seq2: B6Ng01-311C07.g_67_1196

seq1  GAATTCCTACTTAATATTTTTCCTTTTCCTTTTTTTTGCATGCCTAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTTAATATTTTTCCTTTTCCTTTTTTTTGCATGCCTAGTAA  50

seq1  TTCTTAATGTAGAAGAATACTTCATTTTAAGTTTTAAATTTCAGTTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATGTAGAAGAATACTTCATTTTAAGTTTTAAATTTCAGTTCCAA  100

seq1  ATATTTTAAATTGAACAGAAATAGGAATTTTTCCAGTTTTTTCTCTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAATTGAACAGAAATAGGAATTTTTCCAGTTTTTTCTCTTTAG  150

seq1  TGGCCTAACTATGCCTTAGTCTATTAGTTCAACAGAAAAACATCTCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAACTATGCCTTAGTCTATTAGTTCAACAGAAAAACATCTCATGC  200

seq1  TTTAATCCATACTGCTTTAAAAATTAGCCTAAACTCTCAACAACTAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCATACTGCTTTAAAAATTAGCCTAAACTCTCAACAACTAATCA  250

seq1  TATCTACACAGTAAGAAAAATAATTATGAAAATAATTTGCTTAACATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACACAGTAAGAAAAATAATTATGAAAATAATTTGCTTAACATTCA  300

seq1  TTGACTCTTCTGCTCAGTTTGCTGGAAGTGTTGAATAAAATAGATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTTCTGCTCAGTTTGCTGGAAGTGTTGAATAAAATAGATATTTT  350

seq1  ATTATACTTCTTGGGAAGTACTGGGGATCCTATATTCTAGGAAAGTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACTTCTTGGGAAGTACTGGGGATCCTATATTCTAGGAAAGTACTC  400

seq1  ACTAGGCCAATGAACTATGTCGCTAGTTGTCTTAGTCAAGGTTACTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCCAATGAACTATGTCGCTAGTTGTCTTAGTCAAGGTTACTATTG  450

seq1  AGGTGATGAAACACCATAACCAAGAGCAACATGGGGAGGAAAGGGTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATGAAACACCATAACCAAGAGCAACATGGGGAGGAAAGGGTTTAT  500

seq1  TTCATTCACAGTTCCATATAAACAGTTCATTATTAAAAGTAGTAAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCACAGTTCCATATAAACAGTTCATTATTAAAAGTAGTAAGGACA  550

seq1  CGACTTCAAACAGCAGGAATTTGGAGGCAGGAGCTAATCCTGAAGCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTCAAACAGCAGGAATTTGGAGGCAGGAGCTAATCCTGAAGCCATG  600

seq1  AAGGAATATTGCTTACTGGTTTGCTCTGCCTTCTTTCTTATAGACCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATATTGCTTACTGGTTTGCTCTGCCTTCTTTCTTATAGACCCCAG  650

seq1  GATCATCAGCTCAGGGAAAGCACCATCCACAATGGGCTTGGAGGCATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCAGCTCAGGGAAAGCACCATCCACAATGGGCTTGGAGGCATTTT  700

seq1  TCTTAACTGAGGTTTCTTTCACTTAACTTACCTTAACTTGTATCAAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTGAGGTTTCTTTCACTTAACTTACCTTAACTTGTATCAAGTTG  750

seq1  ACATAAAACTGTCCGACATGTTAGTCCGAC-TTGATTTTTCAGCATGAGG  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACATAAAACTGTCCGACATGTTAGTCCGACTTTGATTTTTCAGCATGAGG  800

seq1  AACTGGAACTTACAGAACTTGATCCAATGTCACATAGCTCCTCAGGGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAACTTACAGAACTTGATCCAATGTCACATAGCTCCTCAGGGTTA  850

seq1  AGGATGGAATCCAGTAATGTTAAGAGAGATTTTCCTCATGGATCCCATAA  899
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  A-GATGGAATCCAGTAATGTTAAGAGAGATTTTCCTCATGGAT-CCATAA  898

seq1  TTTACATGAAGGGGCATTATGAATTCTTGAAAGACTTAAGCACTCATGG-  948
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  TTTACATGAAAGGGCATTATGAATTCTTGAAAGACTTAAGCACTCATGGA  948

seq1  AATTTAAGCACTGAATTTCAAAGAAATTAAATAG--TTTTTTTTTAAAAC  996
      |||||||||||||||||||||||||||| |||||  ||||||||||||||
seq2  AATTTAAGCACTGAATTTCAAAGAAATTTAATAGTTTTTTTTTTTAAAAC  998

seq1  AGAGAAATGTCCA-TTGTACACAG-ATGAAGTTTAAGATTTTGATAACAC  1044
      ||||||||||||| |||||||||| |||| |||  |||||||||||||||
seq2  AGAGAAATGTCCATTTGTACACAGAATGAGGTT--AGATTTTGATAACAC  1046

seq1  G-ATTCTTATTATAGTTAATAACTATTAAGCA-TCTGTCCACCAGACACT  1092
      | ||||||||||||| ||||||||  || ||| |||||||||||||  ||
seq2  GAATTCTTATTATAG-TAATAACTTATAGGCATTCTGTCCACCAGAACCT  1095

seq1  ATTCAATATTTTTATACATTAC-TCTTAAC-TCATT  1126
      | ||||||||||||  | |||| ||||||| |||||
seq2  A-TCAATATTTTTAAGCGTTACGTCTTAACTTCATT  1130


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