BAC Information

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BAC

Clone NameB6Ng01-311G21
Chromosome18 (Build37)
Map Location 18,136,854 - 18,281,825
singlet/doubletdoublet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311G21.bB6Ng01-311G21.g
ACCGA103149GA103150
length1,148213
definitionB6Ng01-311G21.b B6Ng01-311G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,280,669 - 18,281,825)(18,136,854 - 18,137,066)
sequence
gaattcatctgagtgaagcctgtaatgtaggaaactagcacttactcatc
ctgaaagaatttgaaataattagctctgaaaaatttaacatcaacttttc
tggaatatgaatatactataagttcatactataggtatacgtatttgatg
atgaatttctcagtgtttctgacagacttttccttgtaaagaccccagag
gaagacactgaaaaaactatcaattgctttgccagtagttgttacacccc
agattatctgttgctatcagttcactactttcagaatgtcacattacaag
gaaaatataaatctcattgtcaattttaagtgatacaaaatatccaaaca
ttttctggtcaacctcaccaagtaatggggttactaacctggatgaggac
aacaaaagaaggaaaaaggcagctacaaaaagtaattttagtggtcacct
gatttaaaattttatgattaactatgagcttttgagtggaataatcatgt
gtttacatcatcactttgtaaaagtatgtttgcttacttatatgaggaat
gtgtgtgtattttttctaatgctagctatttgaatgcgtatttctacaaa
cagtaaaaaggaactgttaaatctattacctaaaataatctgacatatac
atatgcatgtatattggaggttcgaagaagtgatatttcaacaattacct
aactggtgagtagaaaaataaaattaaactgtatgaagaaaaaattataa
ccatctaaaattatttcatctaagaattgtattgttcttaataaagccaa
atgagctgctatagcaaaggccagatactgcatttctactaagtagcaga
aatgaacctgctattcttgtcatagcctcacaaggcctaatgacaaattt
gtgaactgctaactaggtacatttttttaaatcaccattgtatataatat
tgacattaaaatacttaattatttagcatgtaacattataaactatgaaa
gacagtaagtgagcttagtgtgctaacaaatgtcttgattcctcagccac
tggggatgcagagcaagcagaaatattttagtttcaatgacagtgtggtc
tacagaatgaattcaggaagactactatacagagaattccagtctgga

tctaagaaattgatatcatttgaaaactggtttcacagtcaaagaaaaca
catgatggaacttgtggctttagctatttttgtagcagaggatggcctag
tcagtcatcaatgggaggagaggcccttggtcttgtgaaggctctatgac
ccaatatagggggatggcaggaccaggaatgggagtgaatgggttgggga
tcagggggaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18280669_18281825
seq2: B6Ng01-311G21.b_46_1193 (reverse)

seq1  TCCAGACATGGATTCTCTGTATAGTAGTTCTGTCCTGGAATTCATTCTGT  50
      |||||||  | |||||||||||||||| ||| |||| |||||||||||||
seq2  TCCAGACTGGAATTCTCTGTATAGTAG-TCT-TCCT-GAATTCATTCTGT  47

seq1  AGACCACACTGTC-CTGAAACTAAAATA--TCTGCCTGCCTCTGCATCCC  97
      |||||||||||||  |||||||||||||  ||||| || |||||||||||
seq2  AGACCACACTGTCATTGAAACTAAAATATTTCTGCTTG-CTCTGCATCCC  96

seq1  CAGT-GCTGA-GAATCAAGACATTTGTTAGCACCACTTAGCTCACTTACT  145
      |||| ||||| ||||||||||||||||||||| |||| ||||||||||||
seq2  CAGTGGCTGAGGAATCAAGACATTTGTTAGCA-CACTAAGCTCACTTACT  145

seq1  GTCTTTCATTAAGGTTTTAATAATGTTACATTGCCTAAATTAATTAAGTA  195
      |||||||||  ||   || ||||||||||||   ||||| ||||||||||
seq2  GTCTTTCAT--AG---TTTATAATGTTACAT--GCTAAA-TAATTAAGTA  187

seq1  TTTTTAATGTCAATATTATATACAATGGTGATTTAAAAAAATGTACCTAG  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTAATGTCAATATTATATACAATGGTGATTTAAAAAAATGTACCTAG  236

seq1  TTAGCAGTTCACAAATTTGTCCTTAGGCCTTGTGAGGCTATGACAAGAAT  295
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAGCAGTTCACAAATTTGTCATTAGGCCTTGTGAGGCTATGACAAGAAT  286

seq1  AGCAGGTTCATTTCTGCTACTTAGTAGAAATGCAGTATCTGGCCTTTGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTCATTTCTGCTACTTAGTAGAAATGCAGTATCTGGCCTTTGCT  336

seq1  ATAGCAGCTCATTTGGCTTTATTAAGAACAATACAATTCTTAGATGAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGCTCATTTGGCTTTATTAAGAACAATACAATTCTTAGATGAAAT  386

seq1  AATTTTAGATGGTTATAATTTTTTCTTCATACAGTTTAATTTTATTTTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGATGGTTATAATTTTTTCTTCATACAGTTTAATTTTATTTTTC  436

seq1  TACTCACCAGTTAGGTAATTGTTGAAATATCACTTCTTCGAACCTCCAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACCAGTTAGGTAATTGTTGAAATATCACTTCTTCGAACCTCCAAT  486

seq1  ATACATGCATATGTATATGTCAGATTATTTTAGGTAATAGATTTAACAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCATATGTATATGTCAGATTATTTTAGGTAATAGATTTAACAGT  536

seq1  TCCTTTTTACTGTTTGTAGAAATACGCATTCAAATAGCTAGCATTAGAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTACTGTTTGTAGAAATACGCATTCAAATAGCTAGCATTAGAAA  586

seq1  AAATACACACACATTCCTCATATAAGTAAGCAAACATACTTTTACAAAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACACACATTCCTCATATAAGTAAGCAAACATACTTTTACAAAGT  636

seq1  GATGATGTAAACACATGATTATTCCACTCAAAAGCTCATAGTTAATCATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTAAACACATGATTATTCCACTCAAAAGCTCATAGTTAATCATA  686

seq1  AAATTTTAAATCAGGTGACCACTAAAATTACTTTTTGTAGCTGCCTTTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAATCAGGTGACCACTAAAATTACTTTTTGTAGCTGCCTTTTT  736

seq1  CCTTCTTTTGTTGTCCTCATCCAGGTTAGTAACCCCATTACTTGGTGAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTTGTTGTCCTCATCCAGGTTAGTAACCCCATTACTTGGTGAGG  786

seq1  TTGACCAGAAAATGTTTGGATATTTTGTATCACTTAAAATTGACAATGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAGAAAATGTTTGGATATTTTGTATCACTTAAAATTGACAATGAG  836

seq1  ATTTATATTTTCCTTGTAATGTGACATTCTGAAAGTAGTGAACTGATAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTTTCCTTGTAATGTGACATTCTGAAAGTAGTGAACTGATAGC  886

seq1  AACAGATAATCTGGGGTGTAACAACTACTGGCAAAGCAATTGATAGTTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATAATCTGGGGTGTAACAACTACTGGCAAAGCAATTGATAGTTTT  936

seq1  TTCAGTGTCTTCCTCTGGGGTCTTTACAAGGAAAAGTCTGTCAGAAACAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTCTTCCTCTGGGGTCTTTACAAGGAAAAGTCTGTCAGAAACAC  986

seq1  TGAGAAATTCATCATCAAATACGTATACCTATAGTATGAACTTATAGTAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATTCATCATCAAATACGTATACCTATAGTATGAACTTATAGTAT  1036

seq1  ATTCATATTCCAGAAAAGTTGATGTTAAATTTTTCAGAGCTAATTATTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATTCCAGAAAAGTTGATGTTAAATTTTTCAGAGCTAATTATTTC  1086

seq1  AAATTCTTTCAGGATGAGTAAGTGCTAGTTTCCTACATTACAGGCTTCAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTCAGGATGAGTAAGTGCTAGTTTCCTACATTACAGGCTTCAC  1136

seq1  TCAGATGAATTC  1157
      ||||||||||||
seq2  TCAGATGAATTC  1148


seq1: chr18_18136854_18137066
seq2: B6Ng01-311G21.g_73_285

seq1  TCTAAGAAATTGATATCATTTGAAAACTGGTTTCACAGTCAAAGAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAAATTGATATCATTTGAAAACTGGTTTCACAGTCAAAGAAAACA  50

seq1  CATGATGGAACTTGTGGCTTTAGCTATTTTTGTAGCAGAGGATGGCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGAACTTGTGGCTTTAGCTATTTTTGTAGCAGAGGATGGCCTAG  100

seq1  TCAGTCATCAATGGGAGGAGAGGCCCTTGGTCTTGTGAAGGCTCTATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATCAATGGGAGGAGAGGCCCTTGGTCTTGTGAAGGCTCTATGAC  150

seq1  CCAATATAGGGGGATGGCAGGACCAGGAATGGGAGTGAATGGGTTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATAGGGGGATGGCAGGACCAGGAATGGGAGTGAATGGGTTGGGGA  200

seq1  TCAGGGGGAGGTG  213
      |||||||||||||
seq2  TCAGGGGGAGGTG  213


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