BAC Information

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BAC

Clone NameB6Ng01-311L08
Chromosome18 (Build37)
Map Location 83,692,065 - 83,813,841
singlet/doubletdoublet
Overlap genenone
Upstream geneMbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311L08.bB6Ng01-311L08.g
ACCGA103360GA103361
length493982
definitionB6Ng01-311L08.b B6Ng01-311L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,692,065 - 83,692,563)(83,812,870 - 83,813,841)
sequence
cttaaatccaagttctacccagcttctccatggctctgtgctccacacct
cattgttgcttctggggacaggaggcatggagtgtctggtctcatctgtg
tcctgggtcacatctttctcacaccttccctggacatggcatgaggcatg
tcccatcagacggcaggactatcagcctggcaccggggctttctccccag
gacagctgactggtaggcagggtggggttcaccctgcttgccacagtcac
cccttccaccaccaccctcacaggcagcatcagcagcaggatcttaaaga
gcccagttctgagtttagttttctagccctgtttctttatttcagtgatt
aatattaataaatccctactttccttcctgagaaattcttagcactttgt
ttgaaagataaagaacctattttgcatgaaagcttaaagtatccaccttt
ccaacctcttttctttactaaagatatgttaaagtgtgtgtat
gaattctatgtatttttgaagaaacgcaatgactgtgaacctcagctatg
gcacacttggtttttctatgcactcagttatgaattatggtactgctgcc
cagctatgagtagatttagctagaaaagaatttgctggggatggagggat
gtctcagtaaataaagagcttgctcagacataaagagctgagctcgatcc
acacaacccatacagcaaaaaaggctggctggacctggtaacatgtgttt
ataatcccagcatgaggtagaaaggcatgggtttgctagtcagccagatt
aaacaaattggtgagctccaggtcccagtgagaggctctgtttcaaaata
cacggtgctgtctcctgagaaatgacatcagaggttgacctatgacctct
ctgtgaacatacaaacacacaaacacacatgacaccaccctggcacacac
acacaggaaagtgtgtgacaatgttccaggtgacacgtgaaatgggagct
tctctccccagttgtggtggatctgatactcagggcatctttcatcagtc
ctgcctgctggagcatcattttgctctgcactggtttcttccaccagttg
aagctctgtatgtgaattctgtctgacctcgcagaggagctagaaggact
cctatctctgcctctgatgattttcttcctgtctgtgtctctcaggaagc
cccagtgttttcttcactcaatactatcagttttaaatttgaatgccagg
gatccctcatagtacacagccatgtaaaggctgcaggaaacacctgctga
agttagtgctcactgtgcagcctgtagaaaggtcagtaggtcattgatga
acaacagtagagaaatggggatagaagttgatgggtggttttgggtcaat
ctatgtttcacctaagcaaggaaagatcatgcttcagaaggcatgccctt
ctgacactttccttgtaattgcatacatagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_83692065_83692563
seq2: B6Ng01-311L08.b_46_544

seq1  GAATTCCTTAAATCCAAGTTCTACCCAGCTTCTCCATGGCTCTGTGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAATCCAAGTTCTACCCAGCTTCTCCATGGCTCTGTGCTCC  50

seq1  ACACCTCATTGTTGCTTCTGGGGACAGGAGGCATGGAGTGTCTGGTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCATTGTTGCTTCTGGGGACAGGAGGCATGGAGTGTCTGGTCTCA  100

seq1  TCTGTGTCCTGGGTCACATCTTTCTCACACCTTCCCTGGACATGGCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCCTGGGTCACATCTTTCTCACACCTTCCCTGGACATGGCATGA  150

seq1  GGCATGTCCCATCAGACGGCAGGACTATCAGCCTGGCACCGGGGCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTCCCATCAGACGGCAGGACTATCAGCCTGGCACCGGGGCTTTCT  200

seq1  CCCCAGGACAGCTGACTGGTAGGCAGGGTGGGGTTCACCCTGCTTGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGACAGCTGACTGGTAGGCAGGGTGGGGTTCACCCTGCTTGCCAC  250

seq1  AGTCACCCCTTCCACCACCACCCTCACAGGCAGCATCAGCAGCAGGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCCTTCCACCACCACCCTCACAGGCAGCATCAGCAGCAGGATCT  300

seq1  TAAAGAGCCCAGTTCTGAGTTTAGTTTTCTAGCCCTGTTTCTTTATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGCCCAGTTCTGAGTTTAGTTTTCTAGCCCTGTTTCTTTATTTCA  350

seq1  GTGATTAATATTAATAAATCCCTACTTTCCTTCCTGAGAAATTCTTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAATATTAATAAATCCCTACTTTCCTTCCTGAGAAATTCTTAGCA  400

seq1  CTTTGTTTGAAAGATAAAGAACCTATTTTGCATGAAAGCTTAAAGTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTGAAAGATAAAGAACCTATTTTGCATGAAAGCTTAAAGTATCC  450

seq1  ACCTTTCCAACCTCTTTTCTTTACTAAAGATATGTTAAAGTGTGTGTAT  499
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCAACCTCTTTTCTTTACTAAAGATATGTTAAAGTGTGTGTAT  499

seq1: chr18_83812870_83813841
seq2: B6Ng01-311L08.g_66_1047 (reverse)

seq1  TCCTATGTATGCAA-TACAAGG-AAGTGTCAGAAGGCCATGCCTTCTG-A  47
      |||||||||||||| ||||||| ||||||||||||| ||||||||||| |
seq2  TCCTATGTATGCAATTACAAGGAAAGTGTCAGAAGGGCATGCCTTCTGAA  50

seq1  GCCTGTTCTTTCC-TGCTTA-GTG-AACATAGATTGA-CCAAAAC--ACC  91
      || || ||||||| |||||| ||| |||||||||||| |||||||   ||
seq2  GCATGATCTTTCCTTGCTTAGGTGAAACATAGATTGACCCAAAACCACCC  100

seq1  ATCAACTTCTATCCCCATTTCTCTACTGTTGTTCATCAATGACCTACTGA  141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTCTATCCCCATTTCTCTACTGTTGTTCATCAATGACCTACTGA  150

seq1  CC-TTCTACAGGCTGCACAGTGAGCACTAACTTCAGCAGGTGTTTCCTGC  190
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTACAGGCTGCACAGTGAGCACTAACTTCAGCAGGTGTTTCCTGC  200

seq1  AGCCTTTACATGGCTGTGTACTATGAGGGATCCCTGGCATTCAAATTTAA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTACATGGCTGTGTACTATGAGGGATCCCTGGCATTCAAATTTAA  250

seq1  AACTGATAGTATTGAGTGAAGAAAACACTGGGGCTTCCTGAGAGACACAG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATAGTATTGAGTGAAGAAAACACTGGGGCTTCCTGAGAGACACAG  300

seq1  ACAGGAAGAAAATCATCAGAGGCAGAGATAGGAGTCCTTCTAGCTCCTCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGAAAATCATCAGAGGCAGAGATAGGAGTCCTTCTAGCTCCTCT  350

seq1  GCGAGGTCAGACAGAATTCACATACAGAGCTTCAACTGGTGGAAGAAACC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGTCAGACAGAATTCACATACAGAGCTTCAACTGGTGGAAGAAACC  400

seq1  AGTGCAGAGCAAAATGATGCTCCAGCAGGCAGGACTGATGAAAGATGCCC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGAGCAAAATGATGCTCCAGCAGGCAGGACTGATGAAAGATGCCC  450

seq1  TGAGTATCAGATCCACCACAACTGGGGAGAGAAGCTCCCATTTCACGTGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATCAGATCCACCACAACTGGGGAGAGAAGCTCCCATTTCACGTGT  500

seq1  CACCTGGAACATTGTCACACACTTTCCTGTGTGTGTGTGCCAGGGTGGTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGAACATTGTCACACACTTTCCTGTGTGTGTGTGCCAGGGTGGTG  550

seq1  TCATGTGTGTTTGTGTGTTTGTATGTTCACAGAGAGGTCATAGGTCAACC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTGTTTGTGTGTTTGTATGTTCACAGAGAGGTCATAGGTCAACC  600

seq1  TCTGATGTCATTTCTCAGGAGACAGCACCGTGTATTTTGAAACAGAGCCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTCATTTCTCAGGAGACAGCACCGTGTATTTTGAAACAGAGCCT  650

seq1  CTCACTGGGACCTGGAGCTCACCAATTTGTTTAATCTGGCTGACTAGCAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGGACCTGGAGCTCACCAATTTGTTTAATCTGGCTGACTAGCAA  700

seq1  ACCCATGCCTTTCTACCTCATGCTGGGATTATAAACACATGTTACCAGGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGCCTTTCTACCTCATGCTGGGATTATAAACACATGTTACCAGGT  750

seq1  CCAGCCAGCCTTTTTTGCTGTATGGGTTGTGTGGATCGAGCTCAGCTCTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGCCTTTTTTGCTGTATGGGTTGTGTGGATCGAGCTCAGCTCTT  800

seq1  TATGTCTGAGCAAGCTCTTTATTTACTGAGACATCCCTCCATCCCCAGCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGAGCAAGCTCTTTATTTACTGAGACATCCCTCCATCCCCAGCA  850

seq1  AATTCTTTTCTAGCTAAATCTACTCATAGCTGGGCAGCAGTACCATAATT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTCTAGCTAAATCTACTCATAGCTGGGCAGCAGTACCATAATT  900

seq1  CATAACTGAGTGCATAGAAAAACCAAGTGTGCCATAGCTGAGGTTCACAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGAGTGCATAGAAAAACCAAGTGTGCCATAGCTGAGGTTCACAG  950

seq1  TCATTGCGTTTCTTCAAAAATACATAGAATTC  972
      ||||||||||||||||||||||||||||||||
seq2  TCATTGCGTTTCTTCAAAAATACATAGAATTC  982