BAC Information

Click to search

BAC

Clone NameB6Ng01-311M13
Chromosome18 (Build37)
Map Location 63,783,991 - 63,785,139
singlet/doubletsinglet
Overlap geneLOC627792
Upstream geneSpink10, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
Downstream geneTxnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311M13.bB6Ng01-311M13.g
ACCGA103417GA103418
length1,1941,143
definitionB6Ng01-311M13.b B6Ng01-311M13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagcatagcgacacactattggcttattcaaacattatcagaaag
attacatgtacgtgcagggtgtcagagttctgtgagttgttgactcagtt
cagatagccctgttatgtctttacattccctttatcttatggtcaagatg
ttcccaggaatgttttaactacggggcatacccaggtttgtttttctctt
ttctcagccccaggcagcctctaggctcacaaacaaccagcaatttctga
gtactttatatgacttacaggtcttgaaatttcatctttctttcattccc
ctcttcttctactaagtatttctaatcttagaatttcacaggtctatatc
tctatgtggagaatactgcatttactctatctttaacacgggaacaaaaa
cagaataagaagggatagtaaacagaactaggcagggacccttctagtga
ggcttgagggtctcagcatgacgcaggtgtacgtagatcagatctctggc
tggaactggtgagatgtctttggggtacccggctcgttcactgtagccag
ttgtgaccagacttctttctgcaccacctgcaagccttttaacttagcat
acagatcattattataacaacataggtttaaacacatcatttaagacggt
gatgggcataggagccccataaaggatctcaaaaagagtaaaactgaatc
aagagggagtattctcagttctaaatagggcaaggggaagaagcgccaag
tctgtgccagtctctaggattaattttgtcaaggtctgtttagagtttta
tttattctttctatctgtcctgagctctgaggtctgtacacacaatataa
ttttcatttgacctctaaatacttggccacaccctgacttacctgggcac
aaggcagggccattatctgacactattgcttttggcactccgaaccttgg
aaaattttctctaatatcttcttgatgactattgagcagtctcattttta
taggaatagcttaattatctgagaatgttcacaaaacagaaggtattgca
tacacattattttttcctagttaagtctattttttcaagtgatgttcaag
tctgtcttctcatggaaggactagtgtccttttcagtttcacgatttaac
cgtctttgacagacttatgttccctaaacacttggaatagtact
gaattccctggagagagggtctcggtgacaaggagcttataccctaaatg
gccagggtcccaggttacagctcaaccctcctgctgatgcgcctctgcaa
agcttcctggcattattgtatttttttttttacttctggtaactgcttta
aaagaacagagctctttgtttaaaggggcccagggacctcataattgcca
caaggcacatgagtggttcctatattttctaaactgtttctcttttaaca
ttaaatattaaattcataatgtttagccaaactgtagatgccacctggaa
aggggaggcgatgctgtcagaaagattgcagagactgataaaagggacct
cctgcattacttacctcagaaccacaagaaaacacacacacacacacaca
cacacacacacacacacacacacacatccacacaaggcagggtagaaatg
gagactgacaaaaaattggctggaaatataaagaactttggctgctgacc
tgcctagggctttggtctcaggctgttctgacttgaacagactatgattc
atctgcatatctccattgtcacctgtagattctagaaggagcatttccag
aatctttaggaactccagaccactccacgcctcttggtctctgcgtgctt
ctctactctcatgactggcatctgtttttctcacccaaaacatctcagct
gtaacctgagcagaagagttgagccgctctcatccaattactcctctata
tcaagctaatccccagctctcaggggaccatctgttgaaggtatgatcca
tgagagcaggggaggaggctcaggaaaacacagctggaccaatctttaaa
ataataatagctattatttttatttattatcatagctgttttgcagaacg
gctatgctacaaaaatcatctgcctgcaatttcttgataacaaacctcca
aactacacatactagaaaatatctgcctctgagtcaaaagagacatcaag
tgctcagcaaaccattacacgttaattcagaaaacaagatctgaagatat
ttgaaaagcataacgctgattactgacaaatggtattagcctggttatca
gctgaacttgacttgcagctaccattctagactgtaaaataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_63783991_63785139
seq2: B6Ng01-311M13.g_67_1209

seq1  GAATTCCCTGGAGAGAGGGTCTCGGTGACAAGGAGCTTATACCCTAGATG  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAATTCCCTGGAGAGAGGGTCTCGGTGACAAGGAGCTTATACCCTAAATG  50

seq1  GCCAGGGTCCCAGGTTACAGCTCAACCCTCCTGCTGATGCGCCTCTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGTCCCAGGTTACAGCTCAACCCTCCTGCTGATGCGCCTCTGCAA  100

seq1  AGCTTCCTGGCATTATTGTATTTTTTTTTTTACTTCTGGTAACTGCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTGGCATTATTGTATTTTTTTTTTTACTTCTGGTAACTGCTTTA  150

seq1  AAAGAACAGAGCTCTTTGTTTAAAGGGGCCCAGGGACCTCATAATTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAGAGCTCTTTGTTTAAAGGGGCCCAGGGACCTCATAATTGCCA  200

seq1  CAAGGCACATGAGTGGTTCCTATATTTTCTAAACTGTTTCTCTTTTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCACATGAGTGGTTCCTATATTTTCTAAACTGTTTCTCTTTTAACA  250

seq1  TTAAATATTAAATTCATAATGTTTAGCCAAACTGTAGATGCCACCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTAAATTCATAATGTTTAGCCAAACTGTAGATGCCACCTGGAA  300

seq1  AGGGGAGGCGATGCTGTCAGAAAGATTGCAGAGACTGATAAAAGGGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGCGATGCTGTCAGAAAGATTGCAGAGACTGATAAAAGGGACCT  350

seq1  CCTGCATTACTTACCTCAGAACCACAAGAAAACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTACTTACCTCAGAACCACAAGAAAACACACACACACACACACA  400

seq1  CACACACACACACACACACACACACATCCACACAAGGCAGGGTAGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACATCCACACAAGGCAGGGTAGAAATG  450

seq1  GAGACTGACAAAAAATTGGCTGGAAATATAAAGAACTTTGGCTGCTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGACAAAAAATTGGCTGGAAATATAAAGAACTTTGGCTGCTGACC  500

seq1  TGCCTAGGGCTTTGGTCTCAGGCTGTTCTGACTTGAACAGACTATGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGGGCTTTGGTCTCAGGCTGTTCTGACTTGAACAGACTATGATTC  550

seq1  ATCTGCATATCTCCATTGTCACCTGTAGATTCTAGAAGGAGCATTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATATCTCCATTGTCACCTGTAGATTCTAGAAGGAGCATTTCCAG  600

seq1  AATCTTTAGGAACTCCAGACCACTCCACGCCTCTTGGTCTCTGCGTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAGGAACTCCAGACCACTCCACGCCTCTTGGTCTCTGCGTGCTT  650

seq1  CTCTACTCTCATGACTGGCATCTGTTTTTCTCACCCAAAACATCTCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCTCATGACTGGCATCTGTTTTTCTCACCCAAAACATCTCAGCT  700

seq1  GTAACCTGAGCAGAAGAGTTGAGCCGCTCTCATCCAATTACTCCTCTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTGAGCAGAAGAGTTGAGCCGCTCTCATCCAATTACTCCTCTATA  750

seq1  TCAAGCTAATCCCCAGCTCTCAGGGGACCATCTGTTGAAGGTATGATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTAATCCCCAGCTCTCAGGGGACCATCTGTTGAAGGTATGATCCA  800

seq1  TGAGAGCAGGGGAGGAGGCTCAGGAAAACACAGCTGGACCAATCTTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAGGGGAGGAGGCTCAGGAAAACACAGCTGGACCAATCTTTAAA  850

seq1  ATAATAATAGCTATTATTTTTATTTATTATCATAGCTGTTTTGCAGAACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAGCTATTATTTTTATTTATTATCATAGCTGTTTTGCAGAACG  900

seq1  GCTATGCTACAAAAATCATCTGCCTGCAATTTCTTGAT-ACAAACCTCCA  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTATGCTACAAAAATCATCTGCCTGCAATTTCTTGATAACAAACCTCCA  950

seq1  AACTACACATACTAG-AAATATCTGCCTCTGAGTC-AAAGAGACATCCAG  997
      ||||||||||||||| ||||||||||||||||||| ||||||||||| ||
seq2  AACTACACATACTAGAAAATATCTGCCTCTGAGTCAAAAGAGACATCAAG  1000

seq1  TGCTCAGCAAACCA-TACACG-TAATCCAG-AAACAAGATCTG-AGATAT  1043
      |||||||||||||| |||||| |||| ||| |||||||||||| ||||||
seq2  TGCTCAGCAAACCATTACACGTTAATTCAGAAAACAAGATCTGAAGATAT  1050

seq1  TTTGAAAAAGCATAAAGGCAGAATAACAAAACAAAATGGTAATTAAGCCT  1093
      ||   |||||||| || || || ||   |    ||||||||  | |||||
seq2  TT--GAAAAGCAT-AACGCTGATTACTGA---CAAATGGTA--TTAGCCT  1092

seq1  GGTTTATCAGCCTGACTCTGACTTGCAGCTAACCAATTCTAGACTGGTGA  1143
      || ||||||| ||||   |||||||||||||  | |||||||||| || |
seq2  GG-TTATCAG-CTGAACTTGACTTGCAGCTA--CCATTCTAGACT-GTAA  1137

seq1  AATAAC  1149
      ||||||
seq2  AATAAC  1143