BAC Information

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BAC

Clone NameB6Ng01-313G06
Chromosome18 (Build37)
Map Location 9,998,890 - 10,133,821
singlet/doubletdoublet
Overlap geneUsp14, Rock1
Upstream geneFzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1
Downstream geneLOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313G06.bB6Ng01-313G06.g
ACCGA104618GA104619
length1,1101,151
definitionB6Ng01-313G06.b B6Ng01-313G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,132,703 - 10,133,821)(9,998,890 - 10,000,059)
sequence
gaattcactggatttgttcagaatcactgtgaccatatttgttgttctta
acaccatagtttcagtgttgtattcataactagtcagtagtttacccttt
ctatttagggcaaatgtagattgccagattgactaacactttcataacaa
ctcattatacacattactggtaactagaaatggaattaatgtaaatgtca
ctaagtgttaaaattaagaccgacataaaagttagatttagatgtcttag
aaatattttatgaagactttagttgtcttctcttgacatataaaattttg
tcactcagtttaaaagtgagctgtaagagagacttaacactcactgtttc
tgtaatttatacacacagctggaaggaaaatgctaccttttttctttggt
tgtaaaggcttatgtatttcacaacagaatagctagaaatgtgtagttat
cgttttgaaagatatattaaaaggaagcattacatgcaaactagtgtgtc
agcatttatttttaattcaattgcattaataaagtaggtaatataaataa
ttttggaagaggacattaaaatgtagatcaagttctttgccctatgtact
gctccatttcatatctgtacaattagcttttgtgtacttttatcacagtt
tctaccatagttaaatcagtcagatattttggtcaaaaaataatgaaata
tttatattcactaaaatgatttgttatgtaatctcaatctggttgccttg
atttttgtctctggaattactatgcagtcatcatattagcagctagaatt
agaaatggtggcatctagtgagtactataaaacaaaaacatggatttgtg
cactcactgatatttatataattaggttgtatatgcagtatatatgtgca
atgtacatttaggtttttttcatgtttgcactttaaaaatatttttgtta
gcacacaaaagtgagttttactgtgctgtttccatgtattatcctttgta
ttcatctgcaacatcctgtgcttccttactggtccccctcctgtgaatac
tgtcctcgtggtctcatgtcagtgaattcatggtcatcatcttgctcctg
ccttctttct

gaattccaggacagccagggctacacagagaaaccctgtctcaaaaaaca
aaaacaaaaaaagaagaaaacaattctacaaagtctgtttgaacaatagg
ttaaaaaaaaaaagacaatagctcaggatggaagatcagcaccaacaaag
caagtgatgccacttgcagaaggactgaaaagagcaaacttgagatcaca
agtccagtctttataaggaacctgcattaggtatgggtaatattgtggca
caagcctgaaaaccaagcactttggaggtctggagtcaggaggataccct
caactatctagcaaattcatggctagcctggaccccatgaatcccatctt
ataaaacaaaaacaatgtagtatggccaaagaacagacatacaaataatt
ggaatagaattgaaaacttcataaacacattcacatctactgtcaaccaa
ttatctataaagatgccagaataattcaactggaaaatagtaggtttcac
tttttgtttgtttgtttgtttaatatcctggagatctggataatcatacc
cgaaagaatggatctgaacatcttatcacacagaaattaaatgaatcaaa
atacctaaagaaactatcaaattcttaaactttcttctctgccacaagga
gcatgaagagataaaattacagactttgagaaaaatacttgcaatctgca
tagctaagaattacaatctacaacagaatagaaagttcagcagaggacac
acagggcaaccaaaacatgaaaaacagtatcattaaggtagtaccacaaa
cttatccatcagctcaaatgaaacctagtaacaacagcaacagctgctca
gctcagagcacgagtcagttaggcagtgctcacaggaatataaagcaagt
atcatttggcactttcttgacaaactgggcatttaccaccatgcaacata
gcaattacacttttggacattcatttcagaaaataaactcctgctacact
aatttctgcaaataacatttatcagcttattcatatagacatacctgaaa
atatgtgtcacttaacaggggatggtttacttacgatgcccagacagaat
tctattcaggaacaactaacctactgacatcaaagctggatgacttcgag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_10132703_10133821
seq2: B6Ng01-313G06.b_45_1154 (reverse)

seq1  AGAAAGAAGGCAAGGGAAGCAAAGAATGATGACAATGAAATACAACTGAC  50
      ||||||||||||   | |||||   |||||||| ||||| |   ||||||
seq2  AGAAAGAAGGCA---GGAGCAA--GATGATGACCATGAATT--CACTGAC  43

seq1  ATGAGAACCAAGGAGAACAGTATTCACAGGAGGGGGACCAGTAAGGAAGC  100
      ||||||  | | ||| ||||||||||||||||||||||||||||||||||
seq2  ATGAGA--CCACGAGGACAGTATTCACAGGAGGGGGACCAGTAAGGAAGC  91

seq1  ACAGGATGTTGCAGATGAATACAAAGGATAATACATGGAAACAGCACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGTTGCAGATGAATACAAAGGATAATACATGGAAACAGCACAGT  141

seq1  AAAACTCACTTTTGTGTGCTAACAAAAATATTTTTAAAGTGCAAACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCACTTTTGTGTGCTAACAAAAATATTTTTAAAGTGCAAACATGA  191

seq1  AAAAAACCTAAATGTACATTGCACATATATACTGCATATACAACCTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCTAAATGTACATTGCACATATATACTGCATATACAACCTAATT  241

seq1  ATATAAATATCAGTGAGTGCACAAATCCATGTTTTTGTTTTATAGTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATATCAGTGAGTGCACAAATCCATGTTTTTGTTTTATAGTACTC  291

seq1  ACTAGATGCCACCATTTCTAATTCTAGCTGCTAATATGATGACTGCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATGCCACCATTTCTAATTCTAGCTGCTAATATGATGACTGCATAG  341

seq1  TAATTCCAGAGACAAAAATCAAGGCAACCAGATTGAGATTACATAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCAGAGACAAAAATCAAGGCAACCAGATTGAGATTACATAACAAA  391

seq1  TCATTTTAGTGAATATAAATATTTCATTATTTTTTGACCAAAATATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAGTGAATATAAATATTTCATTATTTTTTGACCAAAATATCTGA  441

seq1  CTGATTTAACTATGGTAGAAACTGTGATAAAAGTACACAAAAGCTAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTAACTATGGTAGAAACTGTGATAAAAGTACACAAAAGCTAATTG  491

seq1  TACAGATATGAAATGGAGCAGTACATAGGGCAAAGAACTTGATCTACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATATGAAATGGAGCAGTACATAGGGCAAAGAACTTGATCTACATT  541

seq1  TTAATGTCCTCTTCCAAAATTATTTATATTACCTACTTTATTAATGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTCCTCTTCCAAAATTATTTATATTACCTACTTTATTAATGCAAT  591

seq1  TGAATTAAAAATAAATGCTGACACACTAGTTTGCATGTAATGCTTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAAAATAAATGCTGACACACTAGTTTGCATGTAATGCTTCCTTT  641

seq1  TAATATATCTTTCAAAACGATAACTACACATTTCTAGCTATTCTGTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATCTTTCAAAACGATAACTACACATTTCTAGCTATTCTGTTGTG  691

seq1  AAATACATAAGCCTTTACAACCAAAGAAAAAAGGTAGCATTTTCCTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAAGCCTTTACAACCAAAGAAAAAAGGTAGCATTTTCCTTCCA  741

seq1  GCTGTGTGTATAAATTACAGAAACAGTGAGTGTTAAGTCTCTCTTACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTATAAATTACAGAAACAGTGAGTGTTAAGTCTCTCTTACAGC  791

seq1  TCACTTTTAAACTGAGTGACAAAATTTTATATGTCAAGAGAAGACAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTAAACTGAGTGACAAAATTTTATATGTCAAGAGAAGACAACTA  841

seq1  AAGTCTTCATAAAATATTTCTAAGACATCTAAATCTAACTTTTATGTCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCATAAAATATTTCTAAGACATCTAAATCTAACTTTTATGTCGG  891

seq1  TCTTAATTTTAACACTTAGTGACATTTACATTAATTCCATTTCTAGTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTTAACACTTAGTGACATTTACATTAATTCCATTTCTAGTTAC  941

seq1  CAGTAATGTGTATAATGAGTTGTTATGAAAGTGTTAGTCAATCTGGCAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGTGTATAATGAGTTGTTATGAAAGTGTTAGTCAATCTGGCAAT  991

seq1  CTACATTTGCCCTAAATAGAAAGGGTAAACTACTGACTAGTTATGAATAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTGCCCTAAATAGAAAGGGTAAACTACTGACTAGTTATGAATAC  1041

seq1  AACACTGAAACTATGGTGTTAAGAACAACAAATATGGTCACAGTGATTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAAACTATGGTGTTAAGAACAACAAATATGGTCACAGTGATTCT  1091

seq1  GAACAAATCCAGTGAATTC  1119
      |||||||||||||||||||
seq2  GAACAAATCCAGTGAATTC  1110


seq1: chr18_9998890_10000059
seq2: B6Ng01-313G06.g_65_1215

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACA  50

seq1  AAAACAAAAAAAGAAGAAAACAATTCTACAAAGTCTGTTTGAACAATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAAGAAGAAAACAATTCTACAAAGTCTGTTTGAACAATAGG  100

seq1  TTAAAAAAAAAAAGACAATAGCTCAGGATGGAAGATCAGCACCAACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAGACAATAGCTCAGGATGGAAGATCAGCACCAACAAAG  150

seq1  CAAGTGATGCCACTTGCAGAAGGACTGAAAAGAGCAAACTTGAGATCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATGCCACTTGCAGAAGGACTGAAAAGAGCAAACTTGAGATCACA  200

seq1  AGTCCAGTCTTTATAAGGAACCTGCATTAGGTATGGGTAATATTGTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGTCTTTATAAGGAACCTGCATTAGGTATGGGTAATATTGTGGCA  250

seq1  CAAGCCTGAAAACCAAGCACTTTGGAGGTCTGGAGTCAGGAGGATACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGAAAACCAAGCACTTTGGAGGTCTGGAGTCAGGAGGATACCCT  300

seq1  CAACTATCTAGCAAATTCATGGCTAGCCTGGACCCCATGAATCCCATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCTAGCAAATTCATGGCTAGCCTGGACCCCATGAATCCCATCTT  350

seq1  ATAAAACAAAAACAATGTAGTATGGCCAAAGAACAGACATACAAATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAAAAACAATGTAGTATGGCCAAAGAACAGACATACAAATAATT  400

seq1  GGAATAGAATTGAAAACTTCATAAACACATTCACATCTACTGTCAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGAATTGAAAACTTCATAAACACATTCACATCTACTGTCAACCAA  450

seq1  TTATCTATAAAGATGCCAGAATAATTCAACTGGAAAATAGTAGGTTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATAAAGATGCCAGAATAATTCAACTGGAAAATAGTAGGTTTCAC  500

seq1  TTTTTGTTTGTTTGTTTGTTTAATATCCTGGAGATCTGGATAATCATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGTTTGTTTGTTTAATATCCTGGAGATCTGGATAATCATACC  550

seq1  CGAAAGAATGGATCTGAACATCTTATCACACAGAAATTAAATGAATCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGAATGGATCTGAACATCTTATCACACAGAAATTAAATGAATCAAA  600

seq1  ATACCTAAAGAAACTATCAAATTCTTAAACTTTCTTCTCTGCCACAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAAAGAAACTATCAAATTCTTAAACTTTCTTCTCTGCCACAAGGA  650

seq1  GCATGAAGAGATAAAATTACAGACTTTGAGAAAAATACTTGCAATCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAGAGATAAAATTACAGACTTTGAGAAAAATACTTGCAATCTGCA  700

seq1  TAGCTAAGAATTACAATCTACAACAGAATAGAAAGTTCAGCAGAGGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAGAATTACAATCTACAACAGAATAGAAAGTTCAGCAGAGGACAC  750

seq1  ACAGGGCAACCAAAACATGAAAAACAGTATCATTAAGGTAGTACCACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCAACCAAAACATGAAAAACAGTATCATTAAGGTAGTACCACAAA  800

seq1  CTTATCCATCAGCTCAAATGAAACCTAGTAACAACAGCAACAGCTGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCATCAGCTCAAATGAAACCTAGTAACAACAGCAACAGCTGCTCA  850

seq1  GCTCAGAGCACGAGTCAGTTAGGCAGTGCTCACAGGAATATAAAGCAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGCACGAGTCAGTTAGGCAGTGCTCACAGGAATATAAAGCAAGT  900

seq1  ATCATTTGGCACTTTCTTGACAAACTGGGCATTTACCACCATGCAACATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGGCACTTTCTTGACAAACTGGGCATTTACCACCATGCAACATA  950

seq1  GCAATTACACTTTTGGACATTCATTTCAGAAAAATTAAACTCCTGCTTAC  1000
      |||||||||||||||||||||||||||||||||  ||||||||||| |||
seq2  GCAATTACACTTTTGGACATTCATTTCAGAAAA--TAAACTCCTGC-TAC  997

seq1  ACTAATTTCTGCAAATAAACATTTATCAGCTTTATTCATAATAGACAATA  1050
      |||||||||||||||| ||||||||||||| |||||||| |||||| |||
seq2  ACTAATTTCTGCAAAT-AACATTTATCAGC-TTATTCAT-ATAGAC-ATA  1043

seq1  ACTGAAAATAATGTGTCACTTAACAGGGGAATGGTTTAACTACAGAATGC  1100
       |||||||| ||||||||||||||||||| ||||||||  |||   ||||
seq2  CCTGAAAAT-ATGTGTCACTTAACAGGGG-ATGGTTTACTTAC--GATGC  1089

seq1  CCAGACAAGGAAATACTATTCAGGAGCAAAACATAACTACTGACATACAA  1150
      |||||||    ||| ||||||||||  | |||  | ||||||||||   |
seq2  CCAGACA---GAATTCTATTCAGGA--ACAACTAACCTACTGACAT--CA  1132

seq1  AACCTGGATGACTTCTGAGA  1170
      || |||||||||||| ||||
seq2  AAGCTGGATGACTTC-GAGA  1151


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