BAC Information

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BAC

Clone NameB6Ng01-314K08
Chromosome18 (Build37)
Map Location 53,007,256 - 53,008,350
singlet/doubletsinglet
Overlap geneSncaip
Upstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, A730036E13Rik
Downstream geneLOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314K08.bB6Ng01-314K08.g
ACCGA105515GA105516
length1,1591,096
definitionB6Ng01-314K08.b B6Ng01-314K08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagcaggtcaggaagcaggagctgatacaaagaccatggaggga
tgttacttactggcttgcttcccctggcttgctcagtttctttcttatga
aaacccaagactaccaacccagggatggcactacccacaaaatgggccct
cccatccttgatcactaattgagaaaatgccttacagctggatctcatga
aggcatttcctcaacggaggctcctttctctgtgataactccagcttgtg
tcaagttgactctcaaaaccaatcagtacaaaagggaagaaaagttggag
gtatcacacatgcacaaggtattaaaattacaccataaaatggtggcaat
caacgccattgagtacctgcataaaagcagatgtagaagctagtagaata
gaacagtgtttcaaaataagttcaaatctatagggacaactctatttgga
aagtacacaagaaggaaaggttaattttgtcaataaagagtactgagaaa
attggatatccacatgaaaaaaataataatgaaattgaatctttatatgc
agactcaaagtggattaaagacctaaatataagatcagaaactataaaac
tctaagaagagaaaaccaaaggaaagccttctaaacattggccttggcaa
tgatgtttgcctgtaacaccaaaaatatactggctataaaagcaaacata
aaattaatggaactgactccaactataaaacatccacatagcaaagtaaa
tgatcaacaagattaaattgtagccccaggctgggaaaaatatttgtagt
ccacatatttaataagaactcaatatcaaaaagatatataagaactcaca
tgacttataaaaaattacccagctaaaaatgagcaaaatagagatctctc
taatgaaagaataacaattgccaatcaggcattgaaatttacttatcatc
aatcccttaggcaaatgcaaatgaaatcactgggagctaccacatgacat
gaagagagtggccatttcctaaaattaaaacaaatgctgagtatgagagc
catgtccactggggatggtatgcagactggtacatcaatataggaaaaga
atgaagtcatagaactaggctatgtgcctttccttttgaagataatttca
acttccaga
gaattcttcacatcacaaccactaagaagtaatgaccctgaagacagagt
gatgagttactcctgggaataggaataaaaaacacagaaaactaagagaa
aaaaaattagtgtcagctagagaattatgtagtttgggggaattctcaga
atgcatggaatgtcgtattcagctgtgaaattgtctatgcattcaacaaa
tctttcattttttataaagacccaataagagagtaatttgaggatttatt
tctgcaaataccaacactgcaagggaagacttaatgcaatagagtgattt
agagatggctacgtcgtggttgggggaaatgcagaggaaacgtgtgattt
acaaaagcaacacacatttttatttttgcatatttgagactgagctcatg
acccagcatgtctctcttacaagagtgcattgtgctaccatctgggagct
ggagtggaaggcttcccagactcatgtcccaattcacaggacagatggcc
ttctataaggaactgtcagatggccaacctaactcattcatagggcagtt
actggtagtaactcctgccacttagactgaacaaaccaagaccaatgtgt
cttccatctgcttatcctccaacccagactgtgtagcctgttgtctccat
actgttatctatccctgggtgatgcaaaggagagagggctttcagttatc
ggagaggcgtttgctttcctttttactattttctcctaacatcgtccttt
ccttgaatctttccagaggttagtggctggagaaactgctcctttgatta
aatctttactactcctctgtctcaagaactcctggaaaggctgaccaatt
tccccagctgcttcaatggtcctgcggaacacaatctacttccctctgtt
tctttaatgctggggtccttcttatccaagatccttctcctatgaagtgc
cactgtccataaagtcagcatatgctctgccttctcctggaagccccagg
gtcagcccttactgatgtttctctttctgctctcagtaaacggtctgtag
tgtcttttacctgggctccttctgttggactagccagttccgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_53007256_53008350
seq2: B6Ng01-314K08.g_66_1161 (reverse)

seq1  CATACGGGAACT-GCTAGTTCAACAGGAAGGAGCCAAGGT-AAAGACACT  48
      ||||| |||||| |||||| ||||| ||||||||| |||| |||||||||
seq2  CATAC-GGAACTGGCTAGTCCAACA-GAAGGAGCCCAGGTAAAAGACACT  48

seq1  ACAGA-CGTTTACTGAGAGCAGAAAAGAGAAACATCAGTAAGGGCTGA-C  96
      ||||| |||||||||||||||| ||||||||||||||||||||||||| |
seq2  ACAGACCGTTTACTGAGAGCAG-AAAGAGAAACATCAGTAAGGGCTGACC  97

seq1  CTGGGGCTTCCAGGAGAAGGCAGAGCATATGCTGACTTTATGGGACAGTG  146
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGGGGCTTCCAGGAGAAGGCAGAGCATATGCTGACTTTAT-GGACAGTG  146

seq1  GCACTTCATAGGAGAAGGATCTTGGATAAGAAGGACCCCAGCATTAAAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCATAGGAGAAGGATCTTGGATAAGAAGGACCCCAGCATTAAAGA  196

seq1  AACAGA-GGAAGTAGATTGTGTTCCGCAGGACCATTGAAGCAGCTGGGGA  245
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGGAAGTAGATTGTGTTCCGCAGGACCATTGAAGCAGCTGGGGA  246

seq1  AATTGGTCAGCCTTTCCAGGAGTTCTTGAGACAGAGGAGTAGTAAAGATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTCAGCCTTTCCAGGAGTTCTTGAGACAGAGGAGTAGTAAAGATT  296

seq1  TAATCAAAGGAGCAGTTTCTCCAGCCACTAACCTCTGGAAAGATTCAAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAAGGAGCAGTTTCTCCAGCCACTAACCTCTGGAAAGATTCAAGG  346

seq1  AAAGGACGATGTTAGGAGAAAATAGTAAAAAGGAAAGCAAACGCCTCTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACGATGTTAGGAGAAAATAGTAAAAAGGAAAGCAAACGCCTCTCC  396

seq1  GATAACTGAAAGCCCTCTCTCCTTTGCATCACCCAGGGATAGATAACAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTGAAAGCCCTCTCTCCTTTGCATCACCCAGGGATAGATAACAGT  446

seq1  ATGGAGACAACAGGCTACACAGTCTGGGTTGGAGGATAAGCAGATGGAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACAACAGGCTACACAGTCTGGGTTGGAGGATAAGCAGATGGAAG  496

seq1  ACACATTGGTCTTGGTTTGTTCAGTCTAAGTGGCAGGAGTTACTACCAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGGTCTTGGTTTGTTCAGTCTAAGTGGCAGGAGTTACTACCAGT  546

seq1  AACTGCCCTATGAATGAGTTAGGTTGGCCATCTGACAGTTCCTTATAGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCCTATGAATGAGTTAGGTTGGCCATCTGACAGTTCCTTATAGAA  596

seq1  GGCCATCTGTCCTGTGAATTGGGACATGAGTCTGGGAAGCCTTCCACTCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTGTCCTGTGAATTGGGACATGAGTCTGGGAAGCCTTCCACTCC  646

seq1  AGCTCCCAGATGGTAGCACAATGCACTCTTGTAAGAGAGACATGCTGGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAGATGGTAGCACAATGCACTCTTGTAAGAGAGACATGCTGGGT  696

seq1  CATGAGCTCAGTCTCAAATATGCAAAAATAAAAATGTGTGTTGCTTTTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTCAGTCTCAAATATGCAAAAATAAAAATGTGTGTTGCTTTTGT  746

seq1  AAATCACACGTTTCCTCTGCATTTCCCCCAACCACGACGTAGCCATCTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACACGTTTCCTCTGCATTTCCCCCAACCACGACGTAGCCATCTCT  796

seq1  AAATCACTCTATTGCATTAAGTCTTCCCTTGCAGTGTTGGTATTTGCAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTCTATTGCATTAAGTCTTCCCTTGCAGTGTTGGTATTTGCAGA  846

seq1  AATAAATCCTCAAATTACTCTCTTATTGGGTCTTTATAAAAAATGAAAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCCTCAAATTACTCTCTTATTGGGTCTTTATAAAAAATGAAAGA  896

seq1  TTTGTTGAATGCATAGACAATTTCACAGCTGAATACGACATTCCATGCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAATGCATAGACAATTTCACAGCTGAATACGACATTCCATGCAT  946

seq1  TCTGAGAATTCCCCCAAACTACATAATTCTCTAGCTGACACTAATTTTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAATTCCCCCAAACTACATAATTCTCTAGCTGACACTAATTTTTT  996

seq1  TTCTCTTAGTTTTCTGTGTTTTTTATTCCTATTCCCAGGAGTAACTCATC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAGTTTTCTGTGTTTTTTATTCCTATTCCCAGGAGTAACTCATC  1046

seq1  ACTCTGTCTTCAGGGTCATTACTTCTTAGTGGTTGTGATGTGAAGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCTTCAGGGTCATTACTTCTTAGTGGTTGTGATGTGAAGAATTC  1096