BAC Information

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BAC

Clone NameB6Ng01-314N19
Chromosome18 (Build37)
Map Location 31,044,731 - 31,239,266
singlet/doubletdoublet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314N19.bB6Ng01-314N19.g
ACCGA105663GA105664
length7931,110
definitionB6Ng01-314N19.b B6Ng01-314N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,238,477 - 31,239,266)(31,044,731 - 31,045,744)
sequence
gaattcactgattggcttgggactgagccaaggctcctgtctgaactgga
tagattggattgtttgcattttacttgaatatgtacaccaaatctcattt
ggttccccatttcatgtggtagtttaccacctaatagaaggtgataaaat
gttgatcataaagataattaataatgattaataaggatatattcattcat
tcattcccctagttcatatgaagtaagtgcaactctcttgattccttttg
ttctatgtagttactgtgtaccaactgcatatccactagcttatttctgg
actgactgactaaatgagtgcatatgagtgagtgagtgagtgaatgtgtg
tgtgtatgtgtgtgtgtgtaaaactaatcaacttatatagaggatacacg
tatccttgcattaatcacttaatcacaatgaaaatgatggtttttcagta
aaacagtaatctcaggcaaatcagtgttcttataaactgtctctgccttt
ggtgtttgataagcatcaataagtatatttacaccctgccttctataaag
tacatatgtatattaatcattttatacatagaaatacatggttatacttc
ttattaataataaaatagcagtatttgagtaaatcagttattttatatta
gtcctttatatttcaatctcctgtttctgactggatagtttatatatttt
gacaaaggattgacagtcatttggtaatggaagaccccaaggctattata
tttccaagacatctgcataatgccctataatcattccaccaga
gaattcagtaggaattcagtgagaaggttatctatttagtaacattcgaa
tttacttctagtagagaaggtgaaactaattaggcattacaaagaacgga
actggaatacctctgggctggtctgcagagtgtttacttgggacagtagc
cagtcttacccaaacaagggaatacacaatgttctagctaataggtgagt
ttaccatgaaagagttagggaatccccctgagacaggtttcctcactagg
cccaaagaaacagcataatcaggcatttactaagaacccctggtattggg
cttaacaatagactactagcattacacctggctcccttcttagtggcagt
ggcctggtccccaccttcttttgatgtatacattccttatgttttgtgtc
actgtaactaggggatgtatcttgcctggtttcttgttattcttctgtaa
aaaaagttcgatgctcgacttgacaaattacattcagattctacacaatc
tcctgtgttgcatctgtctgtcattcattcgccgactctttgtccacctg
taaccagagacccattctacgcagacagggactaaaaagggtctgcagca
atgggttacttttttcttacacacattcctggtatgaatttccataagaa
gagcctatgttatatttgatataaagtttttcctgctactatcttgtgtt
ctctgagggaggatatgtagcattcttctcttgatcagtttcctgtcatg
gtgcaactcactgtccacatagctcagccagtggacagtatgtgagatct
ttttccacatgctcatcttgacattattgttattctgttgctaattaatg
tctactgtgaaaatcttcaccaaaattggactttaaaactctagtggaac
tgtgaaactatataacaaaccattcttattccttcatagtatttaattat
tagacaatatttaaacaaactagaaaaaagtagaccaaactcaagctcat
gacccagacaaggaagggatgagagtacacgctttaagaaagtctggagt
gccagagaactactagaacaggccttaatttttttttaaatttttcaaga
ttaattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31238477_31239266
seq2: B6Ng01-314N19.b_46_838 (reverse)

seq1  TCTGGTGGAATGAATATAGGGCATTATCAAACTGTCTTGGAAATATAATA  50
      ||||||||||||| |||||||||||||  |  ||||||||||||||||||
seq2  TCTGGTGGAATGATTATAGGGCATTATGCAGATGTCTTGGAAATATAATA  50

seq1  GCCTT-GGGTCTTCCATTACC-AATGACTGTC-ATCCTTTGTCAAAATAT  97
      ||||| ||||||||||||||| |||||||||| |||||||||||||||||
seq2  GCCTTGGGGTCTTCCATTACCAAATGACTGTCAATCCTTTGTCAAAATAT  100

seq1  ATAAACTATCCAGTCAGAAACAGGAGATTGAAATATAAAGGACTAATATA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATCCAGTCAGAAACAGGAGATTGAAATATAAAGGACTAATATA  150

seq1  AAATAACTGATTTACTCAAAAACTGCTATTTTATTATTAATAAGAAGTAT  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATAACTGATTTACTCAAATACTGCTATTTTATTATTAATAAGAAGTAT  200

seq1  AACCATGTATTTCTATGTATAAAATGATTAATATACATATGTACTTTATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGTATTTCTATGTATAAAATGATTAATATACATATGTACTTTATA  250

seq1  GAAGGCAGGGTGTAAATATACTTATTGATGCTTATCAAACACCAAAGGCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGGGTGTAAATATACTTATTGATGCTTATCAAACACCAAAGGCA  300

seq1  GAGACAGTTTATAAGAACACTGATTTGCCTGAGATTACTGTTTTACTGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTTTATAAGAACACTGATTTGCCTGAGATTACTGTTTTACTGAA  350

seq1  AAACCATCATTTTCATTGTGATTAAGTGATTAATGCAAGGATACGTGTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCATTTTCATTGTGATTAAGTGATTAATGCAAGGATACGTGTAT  400

seq1  CCTCTATATAAGTTGATTAGTTTTACACACACACACATACACACACACAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATATAAGTTGATTAGTTTTACACACACACACATACACACACACAT  450

seq1  TCACTCACTCACTCACTCATATGCACTCATTTAGTCAGTCAGTCCAGAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACTCACTCACTCATATGCACTCATTTAGTCAGTCAGTCCAGAAA  500

seq1  TAAGCTAGTGGATATGCAGTTGGTACACAGTAACTACATAGAACAAAAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGTGGATATGCAGTTGGTACACAGTAACTACATAGAACAAAAGG  550

seq1  AATCAAGAGAGTTGCACTTACTTCATATGAACTAGGGGAATGAATGAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAGAGTTGCACTTACTTCATATGAACTAGGGGAATGAATGAATG  600

seq1  AATATATCCTTATTAATCATTATTAATTATCTTTATGATCAACATTTTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCCTTATTAATCATTATTAATTATCTTTATGATCAACATTTTAT  650

seq1  CACCTTCTATTAGGTGGTAAACTACCACATGAAATGGGGAACCAAATGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTATTAGGTGGTAAACTACCACATGAAATGGGGAACCAAATGAG  700

seq1  ATTTGGTGTACATATTCAAGTAAAATGCAAACAATCCAATCTATCCAGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTGTACATATTCAAGTAAAATGCAAACAATCCAATCTATCCAGTT  750

seq1  CAGACAGGAGCCTTGGCTCAGTCCCAAGCCAATCAGTGAATTC  790
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGAGCCTTGGCTCAGTCCCAAGCCAATCAGTGAATTC  793

seq1: chr18_31044731_31045744
seq2: B6Ng01-314N19.g_158_1173

seq1  AACGGAACTGGAATACCTCTGGGCTGGTCTGCAGAGTGTTTACTTGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAACTGGAATACCTCTGGGCTGGTCTGCAGAGTGTTTACTTGGGAC  50

seq1  AGTAGCCAGTCTTACCCAAACAAGGGAATACACAATGTTCTAGCTAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCAGTCTTACCCAAACAAGGGAATACACAATGTTCTAGCTAATAG  100

seq1  GTGAGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTTCCTC  150

seq1  ACTAGGCCCAAAGAAACAGCATAATCAGGCATTTACTAAGAACCCCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCCCAAAGAAACAGCATAATCAGGCATTTACTAAGAACCCCTGGT  200

seq1  ATTGGGCTTAACAATAGACTACTAGCATTACACCTGGCTCCCTTCTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCTTAACAATAGACTACTAGCATTACACCTGGCTCCCTTCTTAGT  250

seq1  GGCAGTGGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTATGTTT  300

seq1  TGTGTCACTGTAACTAGGGGATGTATCTTGCCTGGTTTCTTGTTATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACTGTAACTAGGGGATGTATCTTGCCTGGTTTCTTGTTATTCTT  350

seq1  CTGTAAAAAAAGTTCGATGCTCGACTTGACAAATTACATTCAGATTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAAAAGTTCGATGCTCGACTTGACAAATTACATTCAGATTCTAC  400

seq1  ACAATCTCCTGTGTTGCATCTGTCTGTCATTCATTCGCCGACTCTTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCCTGTGTTGCATCTGTCTGTCATTCATTCGCCGACTCTTTGTC  450

seq1  CACCTGTAACCAGAGACCCATTCTACGCAGACAGGGACTAAAAAGGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTAACCAGAGACCCATTCTACGCAGACAGGGACTAAAAAGGGTCT  500

seq1  GCAGCAATGGGTTACTTTTTTCTTACACACATTCCTGGTATGAATTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATGGGTTACTTTTTTCTTACACACATTCCTGGTATGAATTTCCA  550

seq1  TAAGAAGAGCCTATGTTATATTTGATATAAAGTTTTTCCTGCTACTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGAGCCTATGTTATATTTGATATAAAGTTTTTCCTGCTACTATCT  600

seq1  TGTGTTCTCTGAGGGAGGATATGTAGCATTCTTCTCTTGATCAGTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCTGAGGGAGGATATGTAGCATTCTTCTCTTGATCAGTTTCCT  650

seq1  GTCATGGTGCAACTCACTGTCCACATAGCTCAGCCAGTGGACAGTATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTGCAACTCACTGTCCACATAGCTCAGCCAGTGGACAGTATGTG  700

seq1  AGATCTTTTTCCACATGCTCATCTTGACATTATTGTTATTCTGTTGCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTTTCCACATGCTCATCTTGACATTATTGTTATTCTGTTGCTAA  750

seq1  TTAATGTCTACTGTGAAAATCTTCACCAAAATTGGACTTTAAAACTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTCTACTGTGAAAATCTTCACCAAAATTGGACTTTAAAACTCTAG  800

seq1  TGGAACTGTGAAACTATATAACAAACCATTCTTATTCCTTCATAGTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGTGAAACTATATAACAAACCATTCTTATTCCTTCATAGTATTT  850

seq1  AATTATTAGACAATAATTAAAACAAACTAGAAAAAAGTAGACCAAAACTC  900
      |||||||||||||| ||| |||||||||||||||||||||||| ||||||
seq2  AATTATTAGACAAT-ATTTAAACAAACTAGAAAAAAGTAGACC-AAACTC  898

seq1  AAGCTCATGACCCAGAC-AGGAA-GGATGAAGAGTACACGCTTTAAAGAA  948
      ||||||||||||||||| ||||| ||||| |||||||||||||| |||||
seq2  AAGCTCATGACCCAGACAAGGAAGGGATG-AGAGTACACGCTTT-AAGAA  946

seq1  AGTCT-GAGTG-CAGAGAACTAACTAG-ACAGTCTTTATTTTTTTTTTAA  995
      ||||| ||||| ||||||||| ||||| |||| | ||| |||||||||||
seq2  AGTCTGGAGTGCCAGAGAACT-ACTAGAACAGGCCTTAATTTTTTTTTAA  995

seq1  ATTTTTTAAAGAT---TTATTT  1014
      | ||||| |||||   ||||||
seq2  A-TTTTTCAAGATTAATTATTT  1016