BAC Information

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BAC

Clone NameB6Ng01-317B04
Chromosome18 (Build37)
Map Location 42,947,018 - 43,089,745
singlet/doubletdoublet
Overlap genePpp2r2b
Upstream geneLOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037
Downstream geneLOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317B04.bB6Ng01-317B04.g
ACCGA107308GA107309
length1,1731,059
definitionB6Ng01-317B04.b B6Ng01-317B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,947,018 - 42,948,185)(43,088,695 - 43,089,745)
sequence
gaattccaagacagccagggctacacagagaaaccctgtctcgaaaaaaa
aagagagagagagagagagtccctagagcaacagtgtagtggcttggact
aatgtggtaccagcagtagaggtagaaagaggcaggttaatttgagataa
tctgaaagtagaggtcacagggataaaggcataaagactgagaggaggga
gcccagggtgcatccagaggctgcaccttcagtgattacttcattcacgg
agaggtaaaagtttgtgcctttaattttgcaaggccaccacccttgatga
tgatatgggtctcagttaggtgtctacctttgtcccagatcacatccatc
cccgtcattgaagtactcagacttcattttccgcgacttaacagtatccc
aaaccatcttacccagtttactaactgtgttgacaattgtctggataggc
gtacaagccccaggagaataaggacaatgtccaactaggtttttgcacac
tcttcagtacctaatttgttgcctgagtcttgggatatgcttagtaaaca
tctgctgattgagatttacgaagtgtgagacagactaagcaattttcagt
ttcattcacacaatccttttcagagcaattggataatgggtgaagtgata
tggatttgctacagcaggtaccatgccagtctccagggaaacggaagcca
gcagaggaggcaccatctgcagcctgtggctttagagcactctggtggaa
gtctgtccaggtgatgacctcacaagcatgggtgtttcctgtattgagca
ttctaaaggataagaactatgacaggttgattactgtcaattcacagcca
ggagactgtcgagctagggaccctaccgtgctggcgagcacaggcaaaga
ttcttagagctgggagccagggaggagtcacttcaggcttcagcgacctc
tgagaaggtgtgtttaatggagcttcttttacaaggagagctgttgaatt
ctggctaaagcttgatcatcctgcagtctcaggatctggggttggctgga
attataaacccagtgaagaataaactcatcagtggagataacttggggat
gttccttttatcttgggactaccccaccctccaggtatgcctgctataag
agccaggccaaggtatcaggtct
gaattctctaagttgatcaggtaggaggatagaagtatgataggtgaatg
agaaaggccaagtctgcaaaacactgtgggagggatgtttttagttaagt
gccagggtgaacaattttgattttattctgaatacaatgaaaatacattg
aaggatttttatatagaaacccagtgtattccaattcacatttcctaaca
tgagttttctctggctacttaatagagtacattagatttcaaggaacaaa
ggtgggaggtaaaaaaccaatgacatgactatcctagctacccaaatgga
aatggctatggtgtggcccagactgatgtagagacaagaagtaaagacat
tcaaggctgggtagaaaataaaaccatggagttttcttcttttttttttt
aatgttagatttttttttaattaggtattttcctcgtttacattttcaat
gctaccccaaaggtcccccatacccacccccccaatcccctacccaccca
ctccccctttttggccctggcgttcccctgtactggggcatataaagttt
gcaagtccaatgggcctctatttgcagtgatggccgactaggccatcttt
tgatagagttttcttctataaaatacaataagaatgaagaaagagatgat
gacaccccagccttgtgtaaaaatatatgtttcaactggaatgtctttat
gataatggtgtttgtagaagtcattgttgactctaatgctgagagcagta
gcctagtggggagttgattttgagctggagaagactttgaagtactcagg
cccccaccttcagctgatgaatcagctcctgccaagtctctttggagctt
ctaccttggctattgaacctatttttttatgtcacaatgcagtctagttc
cacaatagggtttttttttttttttggttgttggtcataaaagccccttc
ccttgcttagttcttaatcttggcaacatattcttcaccagtgtcatctc
tgggatgtgtgttttctaaattgtaaccaaactgatccacaataatgatc
ctagtcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42947018_42948185
seq2: B6Ng01-317B04.b_49_1221

seq1  GAATTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAA  50

seq1  AAGAGAGAGAGAGAGAGAGTCCCTAGAGCAACAGTGTAGTGGCTTGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGAGAGAGAGAGTCCCTAGAGCAACAGTGTAGTGGCTTGGACT  100

seq1  AATGTGGTACCAGCAGTAGAGGTAGAAAGAGGCAGGTTAATTTGAGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTACCAGCAGTAGAGGTAGAAAGAGGCAGGTTAATTTGAGATAA  150

seq1  TCTGAAAGTAGAGGTCACAGGGATAAAGGCATAAAGACTGAGAGGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGTAGAGGTCACAGGGATAAAGGCATAAAGACTGAGAGGAGGGA  200

seq1  GCCCAGGGTGCATCCAGAGGCTGCACCTTCAGTGATTACTTCATTCACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGTGCATCCAGAGGCTGCACCTTCAGTGATTACTTCATTCACGG  250

seq1  AGAGGTAAAAGTTTGTGCCTTTAATTTTGCAAGGCCACCACCCTTGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAAAAGTTTGTGCCTTTAATTTTGCAAGGCCACCACCCTTGATGA  300

seq1  TGATATGGGTCTCAGTTAGGTGTCTACCTTTGTCCCAGATCACATCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGGGTCTCAGTTAGGTGTCTACCTTTGTCCCAGATCACATCCATC  350

seq1  CCCGTCATTGAAGTACTCAGACTTCATTTTCCGCGACTTAACAGTATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCATTGAAGTACTCAGACTTCATTTTCCGCGACTTAACAGTATCCC  400

seq1  AAACCATCTTACCCAGTTTACTAACTGTGTTGACAATTGTCTGGATAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCTTACCCAGTTTACTAACTGTGTTGACAATTGTCTGGATAGGC  450

seq1  GTACAAGCCCCAGGAGAATAAGGACAATGTCCAACTAGGTTTTTGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGCCCCAGGAGAATAAGGACAATGTCCAACTAGGTTTTTGCACAC  500

seq1  TCTTCAGTACCTAATTTGTTGCCTGAGTCTTGGGATATGCTTAGTAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTACCTAATTTGTTGCCTGAGTCTTGGGATATGCTTAGTAAACA  550

seq1  TCTGCTGATTGAGATTTACGAAGTGTGAGACAGACTAAGCAATTTTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGATTGAGATTTACGAAGTGTGAGACAGACTAAGCAATTTTCAGT  600

seq1  TTCATTCACACAATCCTTTTCAGAGCAATTGGATAATGGGTGAAGTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCACACAATCCTTTTCAGAGCAATTGGATAATGGGTGAAGTGATA  650

seq1  TGGATTTGCTACAGCAGGTACCATGCCAGTCTCCAGGGAAACGGAAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGCTACAGCAGGTACCATGCCAGTCTCCAGGGAAACGGAAGCCA  700

seq1  GCAGAGGAGGCACCATCTGCAGCCTGTGGCTTTAGAGCACTCTGGTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAGGCACCATCTGCAGCCTGTGGCTTTAGAGCACTCTGGTGGAA  750

seq1  GTCTGTCCAGGTGATGACCTCACAAGCATGGGTGTTTCCTGTATTGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCCAGGTGATGACCTCACAAGCATGGGTGTTTCCTGTATTGAGCA  800

seq1  TTCTAAAGGATAAGAACTATGACAGGTTGATTACTGTCAATTCACAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGGATAAGAACTATGACAGGTTGATTACTGTCAATTCACAGCCA  850

seq1  GGAGACTGTCGAGCTAGGGACCCTACCGTGCTGGCGAGCACAGGCAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGTCGAGCTAGGGACCCTACCGTGCTGGCGAGCACAGGCAAAGA  900

seq1  TTCTTAGAGCTGGGAGCCAGGGAGGAGTCACTTCAGGCTTCAGCGACCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAGCTGGGAGCCAGGGAGGAGTCACTTCAGGCTTCAGCGACCTC  950

seq1  TGAGAAGGGTGTGTTTAATGGAGCTTCTTTTACAAGGAGAAGCTTGTTGA  1000
      |||||| |||||||||||||||||||||||||||||||| ||| ||||||
seq2  TGAGAA-GGTGTGTTTAATGGAGCTTCTTTTACAAGGAG-AGC-TGTTGA  997

seq1  ATTCTGGCTAAAGCTTGATTCATCCTGCAGTCTCAGGATCTGGGGTTTGG  1050
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  ATTCTGGCTAAAGCTTGA-TCATCCTGCAGTCTCAGGATCTGGGG-TTGG  1045

seq1  CTGG-ATTATAAACCCAGTTGAAG-ATAAACTCATCAGT-GAGATAAC-T  1096
      |||| ||||||||||||| ||||| |||||||||||||| |||||||| |
seq2  CTGGAATTATAAACCCAG-TGAAGAATAAACTCATCAGTGGAGATAACTT  1094

seq1  GGGGATG-TCCTTTTATCTTGGGACTACC---CACTC--AGTAGTGCTGC  1140
      ||||||| |||||||||||||||||||||   | |||   |||   ||||
seq2  GGGGATGTTCCTTTTATCTTGGGACTACCCCACCCTCCAGGTATGCCTGC  1144

seq1  TATAAGAG-CAAGCAAAAGTATCAGGTCT  1168
      |||||||| || || || |||||||||||
seq2  TATAAGAGCCAGGCCAAGGTATCAGGTCT  1173

seq1: chr18_43088695_43089745
seq2: B6Ng01-317B04.g_67_1125 (reverse)

seq1  AATGACTAAGGACATTATTGTGGATCAGTTTGATTACAATTTAAGAAAAC  50
      |||||||| |  |||||||||||||||||||| ||||||||| |||||||
seq2  AATGACTAGGATCATTATTGTGGATCAGTTTGGTTACAATTT-AGAAAAC  49

seq1  ACACAT-CCAGAGATGACACTGGTGAAGAATATGTTG-CAAGATGGAG-A  97
      |||||| |||||||||||||||||||||||||||||| ||||||  || |
seq2  ACACATCCCAGAGATGACACTGGTGAAGAATATGTTGCCAAGATTAAGAA  99

seq1  CTAAGCAAGGGAAGGGGC-TTTATGAACAACAAC--AAAAAAAAAAAAAA  144
      |||||||||||||||||| ||||||| |||||||  ||||||||||||||
seq2  CTAAGCAAGGGAAGGGGCTTTTATGACCAACAACCAAAAAAAAAAAAAAA  149

seq1  CCCTA-TGTGG-ACTAGACTGCATTGTGACAT-AAAAAATAGGTTCAATA  191
      ||||| ||||| |||||||||||||||||||| |||||||||||||||||
seq2  CCCTATTGTGGAACTAGACTGCATTGTGACATAAAAAAATAGGTTCAATA  199

seq1  GCCCAGGTAGAAGCTCCAAAGAGACTTGGCAGGAGCTGATTCATCAGCTG  241
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTAGAAGCTCCAAAGAGACTTGGCAGGAGCTGATTCATCAGCTG  249

seq1  AAGGTGGGGGCCTGAGTACTTCAAAGTCTTCTCCAGCTCAAAATCAACTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGGGCCTGAGTACTTCAAAGTCTTCTCCAGCTCAAAATCAACTC  299

seq1  CCCACTAGGCTACTGCTCTCAGCATTAGAGTCAACAATGACTTCTACAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAGGCTACTGCTCTCAGCATTAGAGTCAACAATGACTTCTACAAA  349

seq1  CACCATTATCATAAAGACATTCCAGTTGAAACATATATTTTTACACAAGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTATCATAAAGACATTCCAGTTGAAACATATATTTTTACACAAGG  399

seq1  CTGGGGTGTCATCATCTCTTTCTTCATTCTTATTGTATTTTATAGAAGAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGTCATCATCTCTTTCTTCATTCTTATTGTATTTTATAGAAGAA  449

seq1  AACTCTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAATAGAGGCCCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAATAGAGGCCCA  499

seq1  TTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAA  549

seq1  AAAGGGGGAGTGGGTGGGTAGGGGATTGGGGGGGTGGGTATGGGGGACCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGAGTGGGTGGGTAGGGGATTGGGGGGGTGGGTATGGGGGACCT  599

seq1  TTGGGGTAGCATTGAAAATGTAAACGAGGAAAATACCTAATTAAAAAAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTAGCATTGAAAATGTAAACGAGGAAAATACCTAATTAAAAAAAA  649

seq1  ATCTAACATTAAAAAAAAAAAGAAGAAAACTCCATGGTTTTATTTTCTAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACATTAAAAAAAAAAAGAAGAAAACTCCATGGTTTTATTTTCTAC  699

seq1  CCAGCCTTGAATGTCTTTACTTCTTGTCTCTACATCAGTCTGGGCCACAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTGAATGTCTTTACTTCTTGTCTCTACATCAGTCTGGGCCACAC  749

seq1  CATAGCCATTTCCATTTGGGTAGCTAGGATAGTCATGTCATTGGTTTTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCATTTCCATTTGGGTAGCTAGGATAGTCATGTCATTGGTTTTTT  799

seq1  ACCTCCCACCTTTGTTCCTTGAAATCTAATGTACTCTATTAAGTAGCCAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCACCTTTGTTCCTTGAAATCTAATGTACTCTATTAAGTAGCCAG  849

seq1  AGAAAACTCATGTTAGGAAATGTGAATTGGAATACACTGGGTTTCTATAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTCATGTTAGGAAATGTGAATTGGAATACACTGGGTTTCTATAT  899

seq1  AAAAATCCTTCAATGTATTTTCATTGTATTCAGAATAAAATCAAAATTGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCTTCAATGTATTTTCATTGTATTCAGAATAAAATCAAAATTGT  949

seq1  TCACCCTGGCACTTAACTAAAAACATCCCTCCCACAGTGTTTTGCAGACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGGCACTTAACTAAAAACATCCCTCCCACAGTGTTTTGCAGACT  999

seq1  TGGCCTTTCTCATTCACCTATCATACTTCTATCCTCCTACCTGATCAACT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTCTCATTCACCTATCATACTTCTATCCTCCTACCTGATCAACT  1049

seq1  TAGAGAATTC  1051
      ||||||||||
seq2  TAGAGAATTC  1059