BAC Information

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BAC

Clone NameB6Ng01-317N08
Chromosome18 (Build37)
Map Location 68,989,766 - 69,141,917
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4, Ccdc68, Rab27b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317N08.bB6Ng01-317N08.g
ACCGA107881GA107882
length6971,182
definitionB6Ng01-317N08.b B6Ng01-317N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,989,766 - 68,990,462)(69,140,727 - 69,141,917)
sequence
gaattcatgttactcctttttctccttttgattggggccagaaccccaga
ccatgggatagggctgccaacaatcacagtggcttttcttatctcactta
agcgttaccataaacatcctcacagacatacccagaggtccaactctacg
atgattctcaaacttatcaggttgccagttagtcttacatgatcagaaag
ctgtagaggaattttaatccagcaacatggctgctctggcacaggatcat
tctgtacaagttagcactttggtgaaaattacgtggacccataggagata
tgatcataaggacaaagtgtggacgcagacgttaatattagatggatcag
agtgttgtcagataacaattacatgagagttaggcacccagagacagttt
cagtcctattcatccgagtctctatggtattttatcagattaaaactgag
gaataaggtctggaataagttcttaggaaagatgagccagccatcaaata
aatgcgtatgtttcattgtagaatcatgcatgattcttacaggagaacaa
ttaagaaatacatagaaaagcaacataaagagcaacaaccttattggtaa
agggtaagcattgttaatgtattcatgtatttttcttctcaatacttgac
gtcatgtgcacataaaagcacaggtggggggaggggctggagggatg
gaattcacctgcaatatcaacaatcacgatagaaatctgtggaaaattcc
tatgatggcccaagaaaataatcctaatacttttctccattgccattaaa
atattaagaattatataattagttttattgccaacccatctgtctatggt
gtttatgagtctgtctctgtctatgtccctgctctttgtctttctatcac
acacacacacacacacacacacacacacacacacacacacacccacaccc
acccacccacacacacacacacacacacacacacacacggtaaagcctag
tgaagaataagaataattaagcactttctgagcagtgtatcatcacagtc
atatcatcatttggaaatggaacatcagtacttgaggggcctccactgca
cgctgttatcactaacagtgagctgtcggggaaacagacccttaccttcc
aaaggacaagctctaactttgattatggttgactatatgaaataaggtcc
aaagatcggtacccaccccacccctttttttaaaaaaaagtctaattagt
gttcctctattggagaggaagctgagcatgaggctccgtcactgccaaat
gaaattaaggcccaattattgataaatgaagagtggtttgtgctggagcc
tggcctggagttgcggaaatacatctgtcatttggcctgcacaggagtca
ttcatgtgtgacatagcatcctgtgcatttatcatgcatctgtagatttt
tgttttaattcagttaactgtctaactagattcagtgctggatgcctcaa
atggagtcaggatttggactgacagatgcaattctagtctgaaatgatgt
gtgacggggctagctatcttgcatattaattattattggagaccattata
gacagtgctttttacactaatgggccgattctcttatcctattttgtggc
ttctatgctaacaaattgtccagttgctccaaggcagtaggatcaatggg
accattgttgttaagtgcatttactattatcgtgaaattagattgaggtg
ttttgaacgcaagggaaatgaaataccctgccttacagtatgtaaatgac
agtccttatagtaggaacacctttctataatctacagctatggagtattt
agtcatgttaacacaactggaaaacaaacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68989766_68990462
seq2: B6Ng01-317N08.b_52_748

seq1  GAATTCATGTTACTCCTTTTTCTCCTTTTGATTGGGGCCAGAACCCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTACTCCTTTTTCTCCTTTTGATTGGGGCCAGAACCCCAGA  50

seq1  CCATGGGATAGGGCTGCCAACAATCACAGTGGCTTTTCTTATCTCACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGATAGGGCTGCCAACAATCACAGTGGCTTTTCTTATCTCACTTA  100

seq1  AGCGTTACCATAAACATCCTCACAGACATACCCAGAGGTCCAACTCTACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTACCATAAACATCCTCACAGACATACCCAGAGGTCCAACTCTACG  150

seq1  ATGATTCTCAAACTTATCAGGTTGCCAGTTAGTCTTACATGATCAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTCAAACTTATCAGGTTGCCAGTTAGTCTTACATGATCAGAAAG  200

seq1  CTGTAGAGGAATTTTAATCCAGCAACATGGCTGCTCTGGCACAGGATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGGAATTTTAATCCAGCAACATGGCTGCTCTGGCACAGGATCAT  250

seq1  TCTGTACAAGTTAGCACTTTGGTGAAAATTACGTGGACCCATAGGAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAAGTTAGCACTTTGGTGAAAATTACGTGGACCCATAGGAGATA  300

seq1  TGATCATAAGGACAAAGTGTGGACGCAGACGTTAATATTAGATGGATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATAAGGACAAAGTGTGGACGCAGACGTTAATATTAGATGGATCAG  350

seq1  AGTGTTGTCAGATAACAATTACATGAGAGTTAGGCACCCAGAGACAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTCAGATAACAATTACATGAGAGTTAGGCACCCAGAGACAGTTT  400

seq1  CAGTCCTATTCATCCGAGTCTCTATGGTATTTTATCAGATTAAAACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTATTCATCCGAGTCTCTATGGTATTTTATCAGATTAAAACTGAG  450

seq1  GAATAAGGTCTGGAATAAGTTCTTAGGAAAGATGAGCCAGCCATCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGTCTGGAATAAGTTCTTAGGAAAGATGAGCCAGCCATCAAATA  500

seq1  AATGCGTATGTTTCATTGTAGAATCATGCATGATTCTTACAGGAGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGTATGTTTCATTGTAGAATCATGCATGATTCTTACAGGAGAACAA  550

seq1  TTAAGAAATACATAGAAAAGCAACATAAAGAGCAACAACCTTATTGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATACATAGAAAAGCAACATAAAGAGCAACAACCTTATTGGTAA  600

seq1  AGGGTAAGCATTGTTAATGTATTCATGTATTTTTCTTCTCAATACTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAGCATTGTTAATGTATTCATGTATTTTTCTTCTCAATACTTGAC  650

seq1  GTCATGTGCACATAAAAGCACAGGTGGGGGGAGGGGCTGGAGGGATG  697
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGCACATAAAAGCACAGGTGGGGGGAGGGGCTGGAGGGATG  697

seq1: chr18_69140727_69141917
seq2: B6Ng01-317N08.g_64_1245 (reverse)

seq1  AATGTTTGTTTTCAATTTGTGTTTAACAATGGACTTAATAAACTCTTTTG  50
      ||||||||||||| | ||||| ||||||   |||| |||  ||||  | |
seq2  AATGTTTGTTTTCCAGTTGTG-TTAACA--TGACTAAAT--ACTCCATAG  45

seq1  CCTTGTTAAGATTTATGAAAAGTGTTTCTTACTTATAGGATTTGTCATTT  100
      |  |||  |||||   |||| ||| ||| ||| |||| |   ||||||||
seq2  C--TGT--AGATTATAGAAAGGTG-TTCCTAC-TATAAGGACTGTCATTT  89

seq1  TCATAATGTTAAGGCAGGGGTATTTTCATTCCC-TGCCTTTCAAACACCT  149
       |||| || ||||||| ||||||||   ||||| ||| ||  ||||||||
seq2  ACATACTG-TAAGGCA-GGGTATTTCATTTCCCTTGCGTTCAAAACACCT  137

seq1  CCATTCTAATTTCCACGATAATAGTAAATGCACTTAACAACAATGGT-CC  198
       || |||||||| |||||||||||||||||||||||||||||||||| ||
seq2  -CAATCTAATTT-CACGATAATAGTAAATGCACTTAACAACAATGGTCCC  185

seq1  ATTGATCCTACCTGCCCTGGAGCAACTGGACAA-TTGTTAGCATAGAAGC  247
      |||||||||| ||||| |||||||||||||||| ||||||||||||||||
seq2  ATTGATCCTA-CTGCCTTGGAGCAACTGGACAATTTGTTAGCATAGAAGC  234

seq1  CACAAAATA-GATAAGAGAATCGG-CCATTAGTGT-AAAAGCACTGTCTA  294
      ||||||||| |||||||||||||| |||||||||| ||||||||||||||
seq2  CACAAAATAGGATAAGAGAATCGGCCCATTAGTGTAAAAAGCACTGTCTA  284

seq1  TAATGGTCT-CAATAATAATTAATATGCAAGATAGCTAGCCCCGTCACAC  343
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTCTCCAATAATAATTAATATGCAAGATAGCTAGCCCCGTCACAC  334

seq1  ATCATTTCAGACTAGAATTGCATCTGTCAGTCCAAATCCTGACTCCATTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCAGACTAGAATTGCATCTGTCAGTCCAAATCCTGACTCCATTT  384

seq1  GAGGCATCCAGCACTGAATCTAGTTAGACAGTTAACTGAATTAAAACAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATCCAGCACTGAATCTAGTTAGACAGTTAACTGAATTAAAACAAA  434

seq1  AATCTACAGATGCATGATAAATGCACAGGATGCTATGTCACACATGAATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAGATGCATGATAAATGCACAGGATGCTATGTCACACATGAATG  484

seq1  ACTCCTGTGCAGGCCAAATGACAGATGTATTTCCGCAACTCCAGGCCAGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTGCAGGCCAAATGACAGATGTATTTCCGCAACTCCAGGCCAGG  534

seq1  CTCCAGCACAAACCACTCTTCATTTATCAATAATTGGGCCTTAATTTCAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCACAAACCACTCTTCATTTATCAATAATTGGGCCTTAATTTCAT  584

seq1  TTGGCAGTGACGGAGCCTCATGCTCAGCTTCCTCTCCAATAGAGGAACAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTGACGGAGCCTCATGCTCAGCTTCCTCTCCAATAGAGGAACAC  634

seq1  TAATTAGACTTTTTTTTAAAAAAAGGGGTGGGGTGGGTACCGATCTTTGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGACTTTTTTTTAAAAAAAGGGGTGGGGTGGGTACCGATCTTTGG  684

seq1  ACCTTATTTCATATAGTCAACCATAATCAAAGTTAGAGCTTGTCCTTTGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTTCATATAGTCAACCATAATCAAAGTTAGAGCTTGTCCTTTGG  734

seq1  AAGGTAAGGGTCTGTTTCCCCGACAGCTCACTGTTAGTGATAACAGCGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAGGGTCTGTTTCCCCGACAGCTCACTGTTAGTGATAACAGCGTG  784

seq1  CAGTGGAGGCCCCTCAAGTACTGATGTTCCATTTCCAAATGATGATATGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGGCCCCTCAAGTACTGATGTTCCATTTCCAAATGATGATATGA  834

seq1  CTGTGATGATACACTGCTCAGAAAGTGCTTAATTATTCTTATTCTTCACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGATACACTGCTCAGAAAGTGCTTAATTATTCTTATTCTTCACT  884

seq1  AGGCTTTACCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGGGTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTACCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGGGTGG  934

seq1  GTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  984

seq1  GATAGAAAGACAAAGAGCAGGGACATAGACAGAGACAGACTCATAAACAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAGACAAAGAGCAGGGACATAGACAGAGACAGACTCATAAACAC  1034

seq1  CATAGACAGATGGGTTGGCAATAAAACTAATTATATAATTCTTAATATTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACAGATGGGTTGGCAATAAAACTAATTATATAATTCTTAATATTT  1084

seq1  TAATGGCAATGGAGAAAAGTATTAGGATTATTTTCTTGGGCCATCATAGG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCAATGGAGAAAAGTATTAGGATTATTTTCTTGGGCCATCATAGG  1134

seq1  AATTTTCCACAGATTTCTATCGTGATTGTTGATATTGCAGGTGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCACAGATTTCTATCGTGATTGTTGATATTGCAGGTGAATTC  1182