BAC Information

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BAC

Clone NameB6Ng01-317N10
Chromosome18 (Build37)
Map Location 65,029,431 - 65,138,639
singlet/doubletdoublet
Overlap genenone
Upstream geneWdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317N10.bB6Ng01-317N10.g
ACCGA107885GA107886
length1,1941,140
definitionB6Ng01-317N10.b B6Ng01-317N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,029,431 - 65,030,209)(65,137,476 - 65,138,639)
sequence
gaattcttcctatggcagaaactacactgattcaaagtacatatttcctt
ctggagctccctgccccagtcccctacccccacaggctactgccacgcta
actggtgatgtaactgtgtctttaaaagcccatcccaccattccatcaag
ccagctgtttcagaattgcagacaacatggtaaagaagggctgtggactc
cttgatcattgttgtatgccagcctgcagcttacaaggaccgggtacacc
tgggaggtaggctggggctgaaaagagagaaaccagacggtcgagggaga
aaatggggctaagacaaaccacgattttactcagaaactgtgcttataag
gggaaaggcccatatcccgccccccactcttggtgcctggagccatttca
tcagaacttaccaggcttcttgatgtattgttgccaagttgttaacacca
gtctgccagttccacaggtagtcagctacctcaggaacatctcaggaaga
caggctcagcctctcagcaggtagcagaagagcagggcagttgtcacttc
aaagaggaacccgacaagtcgacaagtcacaaagctgcactgcaggtggc
cccatctcagtggtggcatggtctataccagcccgcttcaggctggggga
gcctacagatcatgagcccacagtctcacttttctaactgtgaactgagt
tccttggtcagaagcaatgctgtgtgttatatcatggcagtggataaggc
attctgtgcaccgatggtaatgttggcagaagcattctatgtaggaaagg
caactccatcaccagagtgcacatctaatccagtaagaacaaagtgttgc
cctttctataaaagatatggtctagtgtcatcaacctgtccttaagttac
tggaggtcacccctgggaccaagtattcattatataaatctcttggagaa
tgtcacactcaaacgacagcacggcgttggtctactttctattgtcatga
ctaaaatattgagaaaatcaagttaaaggagaaagctttcttgggctcag
gagttgcagagaatttatctggcaagctgttctttgctgttagaggcaga
gtatcatcatggggaacaaagaaagagagagaaaggactgagtcttacac
tcattcatgtgactgctgtcaacgacttaacttcctatttcatg
gaattctgtatattcatattgactctagactttgcccttctgcttaacaa
acactattaagtatcttctttgcaacagaaaatgtacttttcagaaggac
gaccattcaccggtgaccttgtgaagcaggccatgactcatgatcgggaa
acaaggcgaggatgctaagctctaaccaaggagataaactcaagaaagaa
aacagaaggtgggcaaagcaaggaagggtgctgggtaaagctgagcagca
atgtgcaacactgcccatgattactacccttggcccagccccagcgccct
gggccagtgagacccatggacaagcaaagggtaagaatcatttgaggcaa
gcacctaaggaattcatctttgaaacaggatttccaaaagccaagttatg
aaatctctaagagatctattaaaaatcagttagattccaatctctccacc
tccttgagatgtgccttgaactcccccattagagtcaaagttcaaagtcc
ttttcaaactggggcatcaagggttactttcagtcacctggggcaggagg
ggaagtgagacaagaccacagcaaatagggggcccgtagaacatcagtcc
tcctccaagaatggaaattctcctgctaaacttggattaaccacagccac
catgatcaagcaagccaaccagtgtgcccaccccaagacagctgcggcaa
cccacacagggcaccacagaagtcaccacagccctcttggacaactactc
tgtctctactcctcagcaaacgcacagtgctctagctgcctaaaatgctt
cttgtcagcctgagccattagtgcatttaattttctatttaaacactggg
aaccaaagtttcaacccagagggtactatttatcaaaaacagaaacacag
atagcccaggctggcagaataacagcaggtgaatggagatattgattgga
gaaaaggtgtatcccttagggacacaaaaagatatgtctggacattccac
tagatgcctaataaactatttacaggccaatatgagacactggatactca
caaaaaagaaagtctaccactcttcaaacataccctagccagtctcacac
tgaaacttcaacgacttgacccatagactcaactgctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65029431_65030209
seq2: B6Ng01-317N10.b_471_1242

seq1  ATGTATTGTTGCCAAGTTGTTAACACCAGTCTGCCAGTTCCACAGGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTGTTGCCAAGTTGTTAACACCAGTCTGCCAGTTCCACAGGTAGT  50

seq1  CAGCTACCTCAGGAACATCTCAGGAAGACAGGCTCAGCCTCTCAGCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACCTCAGGAACATCTCAGGAAGACAGGCTCAGCCTCTCAGCAGGT  100

seq1  AGCAGAAGAGCAGGGCAGTTGTCACTTCAAAGAGGAACCCGACAAGTCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGAGCAGGGCAGTTGTCACTTCAAAGAGGAACCCGACAAGTCGA  150

seq1  CAAGTCACAAAGCTGCACTGCAGGTGGCCCCATCTCAGTGGTGGCATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCACAAAGCTGCACTGCAGGTGGCCCCATCTCAGTGGTGGCATGGT  200

seq1  CTATACCAGCCCGCTTCAGGCTGGGGGAGCCTACAGATCATGAGCCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCAGCCCGCTTCAGGCTGGGGGAGCCTACAGATCATGAGCCCACA  250

seq1  GTCTCACTTTTCTAACTGTGAACTGAGTTCCTTGGTCAGAAGCAATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTTTTCTAACTGTGAACTGAGTTCCTTGGTCAGAAGCAATGCTG  300

seq1  TGTGTTATATCATGGCAGTGGATAAGGCATTCTGTGCACCGATGGTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATATCATGGCAGTGGATAAGGCATTCTGTGCACCGATGGTAATG  350

seq1  TTGGCAGAAGCATTCTATGTAGGAAAGGCAACTCCATCACCAGAGTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGAAGCATTCTATGTAGGAAAGGCAACTCCATCACCAGAGTGCAC  400

seq1  ATCTAATCCAGTAAGAACAAAGTGTTGCCCTTTCTATAAAAGATATGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATCCAGTAAGAACAAAGTGTTGCCCTTTCTATAAAAGATATGGTC  450

seq1  TAGTGTCATCAACCTGTCCTTAAGTTACTGGAGGTCACCCCTGGGACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCATCAACCTGTCCTTAAGTTACTGGAGGTCACCCCTGGGACCAA  500

seq1  GTATTCATTATATAAATCTCTTGGAGAATGTCACACTCAAACGACAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATTATATAAATCTCTTGGAGAATGTCACACTCAAACGACAGCAC  550

seq1  GGCGTTGGTCTACTTTCTATTGTCATGACTAAAATATTGAGAAAATCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTGGTCTACTTTCTATTGTCATGACTAAAATATTGAGAAAATCAAG  600

seq1  TTAAAAGGAGAAAAGCTTTCCTTGGGCTCA-GAGTTGCAGAGATTTTATC  649
      || ||||||| |||||||| |||||||||| |||||||||||| ||||||
seq2  TT-AAAGGAG-AAAGCTTT-CTTGGGCTCAGGAGTTGCAGAGAATTTATC  647

seq1  CTTGGCAAGCTG-TCTTTGCTGTTTAGAGGCAGAGTATCATCATGGGGAA  698
        |||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  --TGGCAAGCTGTTCTTTGCTG-TTAGAGGCAGAGTATCATCATGGGGAA  694

seq1  CAAAGAAAGAGAGAGGAAAGGACCTGAGTCTTAACATCACTTCCCATGTG  748
      |||||||||||||| ||||||| ||||||||||   ||| |   ||||||
seq2  CAAAGAAAGAGAGA-GAAAGGA-CTGAGTCTTACACTCATT---CATGTG  739

seq1  CCTGCTGTCAACGACCTAAC-TCCTA-TTCATG  779
       |||||||||||||| |||| ||||| ||||||
seq2  ACTGCTGTCAACGACTTAACTTCCTATTTCATG  772

seq1: chr18_65137476_65138639
seq2: B6Ng01-317N10.g_68_1207 (reverse)

seq1  GGTAGCAGTTGAGTTCTATGTGGTTCAGGCTCCTTTGGAGTTTTCAGTGT  50
      ||||||||||||| ||||  ||| ||| | || ||  ||  |||||||| 
seq2  GGTAGCAGTTGAG-TCTA--TGGGTCAAG-TCGTT--GAAGTTTCAGTG-  43

seq1  TGAGACTTGCTAGGGTATGTTTGAAAGAGTGGTAGATTTTTTTTTTTTTT  100
      ||||||| ||||||||||||||| ||||||||||||        ||| ||
seq2  TGAGACTGGCTAGGGTATGTTTG-AAGAGTGGTAGA-------CTTTCTT  85

seq1  TTTTGTGAAGTATCCCAGTGTCTCATTATTTGCCTGTTAAAATAGTTTAT  150
      ||||||| ||||| ||||||||||| |||| ||||||  |||||||||||
seq2  TTTTGTG-AGTAT-CCAGTGTCTCA-TATTGGCCTGT--AAATAGTTTAT  130

seq1  TAAGCATCTTAGTGGAATTGTCCAGACATATCTTTTTGTGTCCCTAAGGG  200
      || ||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  TAGGCATC-TAGTGGAA-TGTCCAGACATATCTTTTTGTGTCCCTAAGGG  178

seq1  ATAACACCTTTTCTCCAATCAATATCTCCATTCACCTGCTGTTTATTCTG  250
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AT-ACACCTTTTCTCCAATCAATATCTCCATTCACCTGCTG-TTATTCTG  226

seq1  CCAGCCTGGGCTATCTGTGTTTCTGTTTTTGATAAATAGTACCCTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGGCTATCTGTGTTTCTGTTTTTGATAAATAGTACCCTCTGGG  276

seq1  TTGAAACTTTGGTTCCCAGTGTTTAAATAGAAAATTAAATGCACTAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTTTGGTTCCCAGTGTTTAAATAGAAAATTAAATGCACTAATGG  326

seq1  CTCAGGCTGACAAGAAGCATTTTAGGCAGCTAGAGCACTGTGCGTTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTGACAAGAAGCATTTTAGGCAGCTAGAGCACTGTGCGTTTGCT  376

seq1  GAGGAGTAGAGACAGAGTAGTTGTCCAAGAGGGCTGTGGTGACTTCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTAGAGACAGAGTAGTTGTCCAAGAGGGCTGTGGTGACTTCTGTG  426

seq1  GTGCCCTGTGTGGGTTGCCGCAGCTGTCTTGGGGTGGGCACACTGGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTGTGTGGGTTGCCGCAGCTGTCTTGGGGTGGGCACACTGGTTGG  476

seq1  CTTGCTTGATCATGGTGGCTGTGGTTAATCCAAGTTTAGCAGGAGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGATCATGGTGGCTGTGGTTAATCCAAGTTTAGCAGGAGAATTT  526

seq1  CCATTCTTGGAGGAGGACTGATGTTCTACGGGCCCCCTATTTGCTGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTGGAGGAGGACTGATGTTCTACGGGCCCCCTATTTGCTGTGGT  576

seq1  CTTGTCTCACTTCCCCTCCTGCCCCAGGTGACTGAAAGTAACCCTTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCACTTCCCCTCCTGCCCCAGGTGACTGAAAGTAACCCTTGATG  626

seq1  CCCCAGTTTGAAAAGGACTTTGAACTTTGACTCTAATGGGGGAGTTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTTTGAAAAGGACTTTGAACTTTGACTCTAATGGGGGAGTTCAAG  676

seq1  GCACATCTCAAGGAGGTGGAGAGATTGGAATCTAACTGATTTTTAATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTCAAGGAGGTGGAGAGATTGGAATCTAACTGATTTTTAATAGA  726

seq1  TCTCTTAGAGATTTCATAACTTGGCTTTTGGAAATCCTGTTTCAAAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGAGATTTCATAACTTGGCTTTTGGAAATCCTGTTTCAAAGATG  776

seq1  AATTCCTTAGGTGCTTGCCTCAAATGATTCTTACCCTTTGCTTGTCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTAGGTGCTTGCCTCAAATGATTCTTACCCTTTGCTTGTCCATG  826

seq1  GGTCTCACTGGCCCAGGGCGCTGGGGCTGGGCCAAGGGTAGTAATCATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACTGGCCCAGGGCGCTGGGGCTGGGCCAAGGGTAGTAATCATGG  876

seq1  GCAGTGTTGCACATTGCTGCTCAGCTTTACCCAGCACCCTTCCTTGCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTGCACATTGCTGCTCAGCTTTACCCAGCACCCTTCCTTGCTTT  926

seq1  GCCCACCTTCTGTTTTCTTTCTTGAGTTTATCTCCTTGGTTAGAGCTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCTTCTGTTTTCTTTCTTGAGTTTATCTCCTTGGTTAGAGCTTAG  976

seq1  CATCCTCGCCTTGTTTCCCGATCATGAGTCATGGCCTGCTTCACAAGGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCGCCTTGTTTCCCGATCATGAGTCATGGCCTGCTTCACAAGGTC  1026

seq1  ACCGGTGAATGGTCGTCCTTCTGAAAAGTACATTTTCTGTTGCAAAGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTGAATGGTCGTCCTTCTGAAAAGTACATTTTCTGTTGCAAAGAAG  1076

seq1  ATACTTAATAGTGTTTGTTAAGCAGAAGGGCAAAGTCTAGAGTCAATATG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAATAGTGTTTGTTAAGCAGAAGGGCAAAGTCTAGAGTCAATATG  1126

seq1  AATATACAGAATTC  1164
      ||||||||||||||
seq2  AATATACAGAATTC  1140