BAC Information

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BAC

Clone NameB6Ng01-318L12
Chromosome18 (Build37)
Map Location 19,482,439 - 19,625,194
singlet/doubletdoublet
Overlap geneLOC665624
Upstream geneLOC100040658
Downstream geneLOC665629, Dsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318L12.bB6Ng01-318L12.g
ACCGA108534GA108535
length1,1081,054
definitionB6Ng01-318L12.b B6Ng01-318L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,624,081 - 19,625,194)(19,482,439 - 19,483,497)
sequence
gaattccacccacacttgaaaatgatacacacattcatgagtcaaaaagt
ccatgaactttcatagatagcttaaaatattatataagcaaattaagtat
accaatcatttgcaaatcacttaagaataatgtaattatcccttttatga
aaggcacagtcctgttctgtagctacatctttgtacttctctaataataa
gttgcatagctatacttgttaaataataatacataacattctttcctttc
ctgtcatatactttaattcacataaggcctgtatgagtagagatgttgca
tggaatgataattttggcagggaacatgcttataattcttttgtaggtgc
taaatgcatacagaggtatgcttgtcacattttgacaattaaccttgtat
ttgtgaaagtcttcctatttctatgaatattttctttattaaagaatatt
ttctgtgatagcgccatactaattctagttactttatatttatactttat
atattgataatatcttttctcaacattgcagcctcccctgcccctttgga
catgcaatgtgaccacataaaatgcatttaataaagtcattatttttgtt
cattctaacaaattcagtcttttgatttaaatatgtattgtattcatatt
taatgtcattataatatattcggattttcatccactgttctgatgaattt
ctcactagctagatttattttttttctacaaatatttctgaatgtataac
atttactcttctgttcacttttgttttgagtgtgacttacttccttactc
tttcatatttatgtatctttgcactttacgttgaacttgggaggtgttca
tgatgatgtatcttttatagctgattacctcacagtatcttattttgtgc
accttgattagttataagtctttgttaacccctatccactgagaacagaa
gcttctctgaccaaggctaagagcagcactaactataatataaacacaaa
tatttagagaaatttgccagtattgttcttactagcaaagcacagttatt
ttatttttccaataggctatgcctttgcattcgtgatgtgagcagacctt
tttgtagc

gaattctttctctttgctctgttaccttttccaatttttatataatagtt
ttgtctaatcttattatattttattttgttaaatttggttcttatctctt
agaagcctgctcttttctaatgagagacagaaacggagtgcaaggggaag
caactgtgaggagtaaagggaggggaaactataatcagtatatattgttt
gaggaaataatgtattttcaatataataaaataataaaaatgggtcaatg
aaatacaaacataataaaagtatgttggagagatgattccatcattaaag
ttgtctgacatcaggtatcaatatcaaattcccatagcccacgtaagaag
actcatgtaagaaaaccagatacactagaagatgcttatagagctcaatg
agagaggagaggaagacaaacagatcctcagaactcacgggttagccaat
ctagctgactttgtcagctctaacctcagtgaaagaccgtgtcctaaaag
ctaaagtcaaaagcaagtaagaaaatgctggacactgatctctggcctat
actaacattttactaatgtgcttgctttcccatcccttcattagcatgtg
cacacacacatgcgcgcacacacacacacagcacaacacaaagaaggaag
aattcaggatatatttctatattttcagatactgtttaaatatgcagcta
aatataaacaaaggactcatgctatgtgatttcaatcaggcctggtatat
gaggaaggttatccttatacagcataattgcaactgtcagtccatgtcaa
aagcttgtaataagttctcaaaataagcttcacactattagtcctacaca
aagtatcatgggaagattttcatgtaggagttttaattctattgtaggat
ctacaatcatagagtcattttgaagataagtatccaatacaatcttgtcc
tatactctaaataaaagtaaactgtccttttcccacagtcacttcccatt
tctagacatgacacttttatactataccataattggttattttattaagt
ttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19624081_19625194
seq2: B6Ng01-318L12.b_47_1154 (reverse)

seq1  GCTACAAAAA-GTCTGCTCAACAATCCACGGATGGCAAGGGCATAAGCCC  49
      |||||||||| |||||||| |||   |||| || |||| ||||||   ||
seq2  GCTACAAAAAGGTCTGCTC-ACA--TCACGAAT-GCAAAGGCATA--GCC  44

seq1  TATTGGGAAAATAAA--TACTGTTGCTTTGCTAGGTAGA--CATACTGGC  95
      |||||| ||||||||   |||| |||||||||||  |||   ||||||||
seq2  TATTGGAAAAATAAAATAACTG-TGCTTTGCTAGTAAGAACAATACTGGC  93

seq1  AAATTTTCCTCTAAATATTTGTGTTTATATTTATAGTTTAGTGCTGCTCT  145
      ||||||  ||||||||||||||||||||| |||||| |||||||||||||
seq2  AAATTT--CTCTAAATATTTGTGTTTATA-TTATAG-TTAGTGCTGCTCT  139

seq1  TAGCCTTGGTCAGAGAAGCTTCTGTTCTCAGTGGATAGGGGTTAACAAAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTGGTCAGAGAAGCTTCTGTTCTCAGTGGATAGGGGTTAACAAAG  189

seq1  ACTTATAACTAATCAAGGTGCACAAAATAAGATACTGTGAGGTAATCAGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAACTAATCAAGGTGCACAAAATAAGATACTGTGAGGTAATCAGC  239

seq1  TATAAAAGATACATCATCATGAACACCTCCCAAGTTCAACGTAAAGTGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGATACATCATCATGAACACCTCCCAAGTTCAACGTAAAGTGCA  289

seq1  AAGATACATAAATATGAAAGAGTAAGGAAGTAAGTCACACTCAAAACAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACATAAATATGAAAGAGTAAGGAAGTAAGTCACACTCAAAACAAA  339

seq1  AGTGAACAGAAGAGTAAATGTTATACATTCAGAAATATTTGTAGAAAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACAGAAGAGTAAATGTTATACATTCAGAAATATTTGTAGAAAAAA  389

seq1  AATAAATCTAGCTAGTGAGAAATTCATCAGAACAGTGGATGAAAATCCGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTAGCTAGTGAGAAATTCATCAGAACAGTGGATGAAAATCCGA  439

seq1  ATATATTATAATGACATTAAATATGAATACAATACATATTTAAATCAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATAATGACATTAAATATGAATACAATACATATTTAAATCAAAA  489

seq1  GACTGAATTTGTTAGAATGAACAAAAATAATGACTTTATTAAATGCATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAATTTGTTAGAATGAACAAAAATAATGACTTTATTAAATGCATTT  539

seq1  TATGTGGTCACATTGCATGTCCAAAGGGGCAGGGGAGGCTGCAATGTTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTCACATTGCATGTCCAAAGGGGCAGGGGAGGCTGCAATGTTGA  589

seq1  GAAAAGATATTATCAATATATAAAGTATAAATATAAAGTAACTAGAATTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATATTATCAATATATAAAGTATAAATATAAAGTAACTAGAATTA  639

seq1  GTATGGCGCTATCACAGAAAATATTCTTTAATAAAGAAAATATTCATAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCGCTATCACAGAAAATATTCTTTAATAAAGAAAATATTCATAGA  689

seq1  AATAGGAAGACTTTCACAAATACAAGGTTAATTGTCAAAATGTGACAAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAGACTTTCACAAATACAAGGTTAATTGTCAAAATGTGACAAGC  739

seq1  ATACCTCTGTATGCATTTAGCACCTACAAAAGAATTATAAGCATGTTCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTGTATGCATTTAGCACCTACAAAAGAATTATAAGCATGTTCCC  789

seq1  TGCCAAAATTATCATTCCATGCAACATCTCTACTCATACAGGCCTTATGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAATTATCATTCCATGCAACATCTCTACTCATACAGGCCTTATGT  839

seq1  GAATTAAAGTATATGACAGGAAAGGAAAGAATGTTATGTATTATTATTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAGTATATGACAGGAAAGGAAAGAATGTTATGTATTATTATTTA  889

seq1  ACAAGTATAGCTATGCAACTTATTATTAGAGAAGTACAAAGATGTAGCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATAGCTATGCAACTTATTATTAGAGAAGTACAAAGATGTAGCTA  939

seq1  CAGAACAGGACTGTGCCTTTCATAAAAGGGATAATTACATTATTCTTAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGGACTGTGCCTTTCATAAAAGGGATAATTACATTATTCTTAAG  989

seq1  TGATTTGCAAATGATTGGTATACTTAATTTGCTTATATAATATTTTAAGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCAAATGATTGGTATACTTAATTTGCTTATATAATATTTTAAGC  1039

seq1  TATCTATGAAAGTTCATGGACTTTTTGACTCATGAATGTGTGTATCATTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATGAAAGTTCATGGACTTTTTGACTCATGAATGTGTGTATCATTT  1089

seq1  TCAAGTGTGGGTGGAATTC  1114
      |||||||||||||||||||
seq2  TCAAGTGTGGGTGGAATTC  1108


seq1: chr18_19482439_19483497
seq2: B6Ng01-318L12.g_69_1122

seq1  GAATTCTTTCTCTTTGCTCTGTTACCTTTTCCAATTTTTATATAATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTTTGCTCTGTTACCTTTTCCAATTTTTATATAATAGTT  50

seq1  TTGTCTAATCTTATTATATTTTATTTTGTTAAATTTGGTTCTTATCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAATCTTATTATATTTTATTTTGTTAAATTTGGTTCTTATCTCTT  100

seq1  AGAAGCCTGCTCTTTTCTAATGAGAGACAGAAACGGAGTGCAAGGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTGCTCTTTTCTAATGAGAGACAGAAACGGAGTGCAAGGGGAAG  150

seq1  CAACTGTGAGGAGTAAAGGGAGGGGAAACTATAATCAGTATATATTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGAGGAGTAAAGGGAGGGGAAACTATAATCAGTATATATTGTTT  200

seq1  GAGGAAATAATGTATTTTCAATATAATAAAATAATAAAAATGGGTCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATAATGTATTTTCAATATAATAAAATAATAAAAATGGGTCAATG  250

seq1  AAATACAAACATAATAAAAGTATGTTGGAGAGATGATTCCATCATTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAACATAATAAAAGTATGTTGGAGAGATGATTCCATCATTAAAG  300

seq1  TTGTCTGACATCAGGTATCAATATCAAATTCCCATAGCCCACGTAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGACATCAGGTATCAATATCAAATTCCCATAGCCCACGTAAGAAG  350

seq1  ACTCATGTAAGAAAACCAGATACACTAGAAGATGCTTATAGAGCTCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTAAGAAAACCAGATACACTAGAAGATGCTTATAGAGCTCAATG  400

seq1  AGAGAGGAGAGGAAGACAAACAGATCCTCAGAACTCACGGGTTAGCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGAGGAAGACAAACAGATCCTCAGAACTCACGGGTTAGCCAAT  450

seq1  CTAGCTGACTTTGTCAGCTCTAACCTCAGTGAAAGACCGTGTCCTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGACTTTGTCAGCTCTAACCTCAGTGAAAGACCGTGTCCTAAAAG  500

seq1  CTAAAGTCAAAAGCAAGTAAGAAAATGCTGGACACTGATCTCTGGCCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTCAAAAGCAAGTAAGAAAATGCTGGACACTGATCTCTGGCCTAT  550

seq1  ACTAACATTTTACTAATGTGCTTGCTTTCCCATCCCTTCATTAGCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATTTTACTAATGTGCTTGCTTTCCCATCCCTTCATTAGCATGTG  600

seq1  CACACACACATGCGCGCACACACACACACAGCACAACACAAAGAAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATGCGCGCACACACACACACAGCACAACACAAAGAAGGAAG  650

seq1  AATTCAGGATATATTTCTATATTTTCAGATACTGTTTAAATATGCAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGATATATTTCTATATTTTCAGATACTGTTTAAATATGCAGCTA  700

seq1  AATATAAACAAAGGACTCATGCTATGTGATTTCAATCAGGCCTGGTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAACAAAGGACTCATGCTATGTGATTTCAATCAGGCCTGGTATAT  750

seq1  GAGGAAGGTTATCCTTATACAGCATAATTGCAACTGTCAGTCCATGTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGTTATCCTTATACAGCATAATTGCAACTGTCAGTCCATGTCAA  800

seq1  AAGCTTGTAATAAGTTCTCAAAATAAGCTTCACACTATTAGTCCTACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGTAATAAGTTCTCAAAATAAGCTTCACACTATTAGTCCTACACA  850

seq1  AAGTATCAT-GGAAGATTTTCATGTAGGAGTTTTAATTCTATTGTAGGAT  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCATGGGAAGATTTTCATGTAGGAGTTTTAATTCTATTGTAGGAT  900

seq1  CTACAATCATAGAGTCATTTTGAAGATAAGTATCCAATACAAATCTTGTC  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTACAATCATAGAGTCATTTTGAAGATAAGTATCCAATAC-AATCTTGTC  949

seq1  CTATAACTCTAAATAAAAGTAAACTGT-CTTTTCCCACAAGTCACTTCCC  998
      |||| |||||||||||||||||||||| |||||||||| |||||||||||
seq2  CTAT-ACTCTAAATAAAAGTAAACTGTCCTTTTCCCAC-AGTCACTTCCC  997

seq1  ATTTCTAGAACATAAACACCTTTTATACTATACCATAAATTGTTTATTTT  1048
      |||||||| ||||  ||| ||||||||||||||||| ||||| |||||||
seq2  ATTTCTAG-ACAT-GACA-CTTTTATACTATACCAT-AATTGGTTATTTT  1043

seq1  ATTTAGTTTGC  1059
      ||| |||||||
seq2  ATTAAGTTTGC  1054


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