BAC Information

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BAC

Clone NameB6Ng01-318N11
Chromosome18 (Build37)
Map Location 35,203,777 - 35,204,862
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954
Downstream geneLOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318N11.bB6Ng01-318N11.g
ACCGA108627GA108628
length1,1831,089
definitionB6Ng01-318N11.b B6Ng01-318N11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctgtgtttgatgtaaaaaatagattaggaaaatggaggagga
taacagattcaaaagcaattaacaaggtaattcaatcaatagatccttta
cagcctggacttcctttacaatcttttataggccaagatcatggcctata
aaaataactgacttgaaagatttcttttgagcaggataaggaaaggtctg
ctttctcagtaccactggaaagagataccactggaaggtacttgcgcagg
gaatgttaaataatccaactttatgtggtaagcaagtcccttaagctatc
atttatcattatatggatgttattctgttggctgattctgataaagatgt
tttagagaatatgtttaaggtaacacaaagaattctgccatgctggggct
tacagattgctccagaaaaaatacaaagaggaggttcatttagttatttg
ggttataaaatcaatcaacagaaaattccaccacaaaaggtacagatcca
tagggaccaactgaaacacttaatgattttcaaatgttattaactagtgt
tattaactggctgtggcctacaattggattaaatacatatgagttaagta
atttgtttcaacattgcaagaagattcaaatttaaacagctgaagcagaa
aaagaattcttgtaattaattaattcttgtaaaacgaagactgcaacatg
caaatataatcaaattgattctaaacttgcttgtattttggtcattttgc
cttcgattcattctcctagtgggctggctcattatgcaaagagaagatag
tattatggaatggattttcttagctcataaacaaatttaaaaaattgaag
acatatatacaaagatttctgagttaattatgaatggtaaaataagatta
tgccaattgtcaggaataaattcagccaaaactatagtatctcttacaaa
tgctgagattatgtcattatggggatcaataaagactggcatagagcttg
tagtaattactttgggcaaattaataacaaatacccaaaagcaacgaata
cagtttcataaaaaaaaacttggagtcttccacaatatcataaaaggaac
accaaaatgcagaagacatccaacacttgatacctgatgtgacaggaatg
gggaaattggcaaggtttattaaatatctcagg
gaattcaactgtagcccttgtcctgaggagtccacagtctgttagaggtg
acagtcagcaaactgtcccctgaaaaaatgagtgatcaccaccttctcta
ggagctgtccttctcggaacactgaccacgtgctggatacatgagatggg
ttttgtgttgtttggaaacagggtctcactgtacatccttggctgtcctg
gaactcactatggagaccacactcacctccaactcacagagatctgcctg
cttttatctctctagtgctgagattagaggtgtgtgccgctacgccagct
acatgagattttagaggccggctgtctaactcctcaacctttcagggact
atgtcaccttccttttagagaggtaacttttgaggtgatggtgtttacag
agtgaagtgctgagtcactacagaaagagtgatcaaccagcctgaaaagg
aaccagggacagtttcagtgatggggtcatctatgctcaggagcagagcc
tgaagaggaaggacgttgcatggtacccctgcgggtctgcaggagaccta
aaactgcaggcatctcccacagagatcctccgagtctgtagatccttaag
tacccatggttccctgtgcccactcaatagttagtcctgcatgcatgtct
ctcagcacgatgccagagcttacatggagggcgatcctttgagagagatt
agaacctagatgacggataattattttggtgagaattagtaagcagtctg
taattccagaggctttcagctgaatcacagatcccctagtgtctgctgcc
taggctagggcacaaattgcaagaagtcaggaatggaggcagagatcccc
gggacgctaggaggcactggttagcctggggacagatactctcacaacct
tgggaaattccaaccagatctggattagatgaaaaatgaaaaatatatta
tgactgaaacgtggtggtgcatgcctttagcccagcactgggcagcagag
gcaggtgggatcttgagttcaagccaccctggttctatgtagtgagttct
ctaggaacagtcaggtcctacacaagagaaaatgctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_35203777_35204862
seq2: B6Ng01-318N11.g_70_1158

seq1  GAATTCAACTGTAGCCCTTGTCCTGAGGAGTCCACAGTCTGTTAGAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGTAGCCCTTGTCCTGAGGAGTCCACAGTCTGTTAGAGGTG  50

seq1  ACAGTCAGCAAACTGTCCCCTGAAAAAATGAGTGATCACCACCTTCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGCAAACTGTCCCCTGAAAAAATGAGTGATCACCACCTTCTCTA  100

seq1  GGAGCTGTCCTTCTCGGAACACTGACCACGTGCTGGATACATGAGATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTCCTTCTCGGAACACTGACCACGTGCTGGATACATGAGATGGG  150

seq1  TTTTGTGTTGTTTGGAAACAGGGTCTCACTGTACATCCTTGGCTGTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTTGTTTGGAAACAGGGTCTCACTGTACATCCTTGGCTGTCCTG  200

seq1  GAACTCACTATGGAGACCACACTCACCTCCAACTCACAGAGATCTGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTATGGAGACCACACTCACCTCCAACTCACAGAGATCTGCCTG  250

seq1  CTTTTATCTCTCTAGTGCTGAGATTAGAGGTGTGTGCCGCTACGCCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTCTCTAGTGCTGAGATTAGAGGTGTGTGCCGCTACGCCAGCT  300

seq1  ACATGAGATTTTAGAGGCCGGCTGTCTAACTCCTCAACCTTTCAGGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGATTTTAGAGGCCGGCTGTCTAACTCCTCAACCTTTCAGGGACT  350

seq1  ATGTCACCTTCCTTTTAGAGAGGTAACTTTTGAGGTGATGGTGTTTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCTTCCTTTTAGAGAGGTAACTTTTGAGGTGATGGTGTTTACAG  400

seq1  AGTGAAGTGCTGAGTCACTACAGAAAGAGTGATCAACCAGCCTGAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTGCTGAGTCACTACAGAAAGAGTGATCAACCAGCCTGAAAAGG  450

seq1  AACCAGGGACAGTTTCAGTGATGGGGTCATCTATGCTCAGGAGCAGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGACAGTTTCAGTGATGGGGTCATCTATGCTCAGGAGCAGAGCC  500

seq1  TGAAGAGGAAGGACGTTGCATGGTACCCCTGCGGGTCTGCAGGAGACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGAAGGACGTTGCATGGTACCCCTGCGGGTCTGCAGGAGACCTA  550

seq1  AAACTGCAGGCATCTCCCACAGAGATCCTCCGAGTCTGTAGATCCTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCAGGCATCTCCCACAGAGATCCTCCGAGTCTGTAGATCCTTAAG  600

seq1  TACCCATGGTTCCCTGTGCCCACTCAATAGTTAGTCCTGCATGCATGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATGGTTCCCTGTGCCCACTCAATAGTTAGTCCTGCATGCATGTCT  650

seq1  CTCAGCACGATGCCAGAGCTTACATGGAGGGCGATCCTTTGAGAGAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACGATGCCAGAGCTTACATGGAGGGCGATCCTTTGAGAGAGATT  700

seq1  AGAACCTAGATGACGGATAATTATTTTGGTGAGAATTAGTAAGCAGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTAGATGACGGATAATTATTTTGGTGAGAATTAGTAAGCAGTCTG  750

seq1  TAATTCCAGAGGCTTTCAGCTGAATCACAGATCCCCTAGTGTCTGCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCAGAGGCTTTCAGCTGAATCACAGATCCCCTAGTGTCTGCTGCC  800

seq1  TAGGCTAGGGCACAAATTGCAAGAAGTCAGGAATGGAGGCAGAGATCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAGGGCACAAATTGCAAGAAGTCAGGAATGGAGGCAGAGATCCCC  850

seq1  GGGACGCTAGGAGGCACTGGTTAGCCTGGGGACAGATACTCTCACAACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGCTAGGAGGCACTGGTTAGCCTGGGGACAGATACTCTCACAACCT  900

seq1  TGGGAAATTCCAACCAGATCTGGATTAGATGAAAAATGAAAAATATATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATTCCAACCAGATCTGGATTAGATGAAAAATGAAAAATATATTA  950

seq1  TGACTGAAAGGTGGTGGTGCATGCCTTTAGGCCCAGCACTGGGCAGGCAG  1000
      ||||||||| ||||||||||||||||||| ||||||||||||||| ||||
seq2  TGACTGAAACGTGGTGGTGCATGCCTTTA-GCCCAGCACTGGGCA-GCAG  998

seq1  AGGCAGGGTGGATCTTGGAGTTCAAGGCCAACCTGG-TCTATGTAGTGAG  1049
      |||||||  ||||||| |||||||| |||| ||||| |||||||||||||
seq2  AGGCAGGTGGGATCTT-GAGTTCAA-GCCACCCTGGTTCTATGTAGTGAG  1046

seq1  T--TCTAGG-ACAGTCAGGT-CTACAC-AGAG-AAATGCTGTT  1086
      |  |||||| |||||||||| |||||| |||| ||||||||||
seq2  TTCTCTAGGAACAGTCAGGTCCTACACAAGAGAAAATGCTGTT  1089