BAC Information

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BAC

Clone NameB6Ng01-319B10
Chromosome18 (Build37)
Map Location 47,865,806 - 48,015,789
singlet/doubletdoublet
Overlap geneA730092B10, LOC383325, LOC100042982, LOC100042284
Upstream geneCdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik
Downstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319B10.bB6Ng01-319B10.g
ACCGA108811GA108812
length1,1621,174
definitionB6Ng01-319B10.b B6Ng01-319B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,865,806 - 47,866,973)(48,014,606 - 48,015,789)
sequence
gaattctacagggataagacctctgcatgtgcacatgtgcccctttgtgt
gtgtgtgaacacacactccatagtcagaacaagggttggaaaggctattt
ggtccagtcaggcctgtcgactgctcttgtttataaagctttattggaac
aaaactacagtcgttgctttgcttgtgtctgtggggacttggcaccccag
aggcagagctgcggagttgctacagatttcatgtgaccatggagtctaca
ggattgactctgaggctctgtatttgcttctttctaggttagggtcatct
aactgatgaaacattctgtgtctagcagtgaagaagcctacaaaatacat
aataaaaaataacttttttttatattcatacactagttttcatctataac
tgtgtaaacaaggtgatttcaaacacaatttggtataaaacattgaaata
agttattttcttctaattataacaaacagggcagcagtagtttatattcc
taacacgattgatcttactcctggtttgttgtctttaatatgcagggttg
ccaagcggttaaatggttgtatatttcccatttaatttctgtaaccatgt
tttcagtgtgaaaacctaaaataatggtaacctgtctggagaccctagga
gagtcattttgcttcacaacttttaagcagtcagtcatgagaactagact
ctagacgatctttcatattttaaagttatatgacagatggctcagtggtt
aagaacattagttgttctcacacaggatccaggttctctttctgccaccc
acatggtgatacacaaacctttgtaactccagttccaggagatttggccc
cctcttctggcttctgtaagcaccaggcatgcacagggtatacacacaca
tgtaagcaaaacacccatacacataaaattaaaaattacaaaagtaatgc
gatgcgcttagaattaacaggaatatagtcaaaaatctagtttaaaaatg
ggtcaaaaaatgccacatagcacagagttaaatcctcaacagatgttatt
tacttccagaataaatcagcattactctaacaaataaaaatattcttgca
catacacagcaaagaaagaagcaatttctcagcctaaaatatctaaaaaa
ggagcccatatt
gaattcttcagagaggtgggagaacaccttggtttacataaggaaaggga
agctctacggacataagagagttgttcctgagacaaaacatgcccttttc
ttgtgatgactcggtgattcattctagtctggaggtctcaaagaagaagt
ggcatccatagaaatgtcctccccccccaaccccccattactaaatctca
gaggcagaaaggacacaacacattgcaggttacaggatcatcagaaagtc
ctgatttcagggcagagtctaaatgggggtattagataaagtgttgggaa
tttggcaagacatgccaataatctttagttctgttgtttgtatgattctg
ctaactcaccatctcagggcaatatgtgtactgagcgttctgtagaacac
aatacagaaagaaaataaaactgacgagttctgtgtaatatatttcccaa
agaaatattttcatgggttttctaacccatgaaaagtgtgctttgttcat
tattaaatctctaacattcccacagagtggctcatgttactgattaaact
aaatctattttagaaaacttctactttagtcttaaagaggaaaaacaaga
aaagatttgggcctttccatgtaagaatcttaaaatgggtgaattaaccc
cataagggccaagtggcattttcttagcagtcagcaaaaagagagcccta
accaggaagacagaacacaggatcaaaatcaagcagctctggaatcatta
agtccactcctcatccctgcctggcattttctcatcaagggtttggtttg
taagtacttgaaccagtgttcctaaactaggttaagctgcattatgtaaa
agtagccattagatctaaaatgggaacccaggagatggggtggtagatgc
taataaactgggtttcatctaccagtttgttgtttttttttaactgtctt
taatttgatttgctttctcatagaaacctacagaaagaaagaaatcctaa
ccttgtattgatgaggctagtttactgagaaaatacctgttcacagaaat
aagtttgtatgtgagcagttaattagatgttgagggccatgacaaggaac
agtattgttacttaaccagtatgcttggtagcactttgccagccatttcc
ttacacgtgttaacactatatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47865806_47866973
seq2: B6Ng01-319B10.b_47_1208

seq1  GAATTCTACAGGGATAAGACCTCTGCATGTGCACATGTGCCCCTTTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGGGATAAGACCTCTGCATGTGCACATGTGCCCCTTTGTGT  50

seq1  GTGTGTGAACACACACTCCATAGTCAGAACAAGGGTTGGAAAGGCTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAACACACACTCCATAGTCAGAACAAGGGTTGGAAAGGCTATTT  100

seq1  GGTCCAGTCAGGCCTGTCGACTGCTCTTGTTTATAAAGCTTTATTGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGTCAGGCCTGTCGACTGCTCTTGTTTATAAAGCTTTATTGGAAC  150

seq1  AAAACTACAGTCGTTGCTTTGCTTGTGTCTGTGGGGACTTGGCACCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACAGTCGTTGCTTTGCTTGTGTCTGTGGGGACTTGGCACCCCAG  200

seq1  AGGCAGAGCTGCGGAGTTGCTACAGATTTCATGTGACCATGGAGTCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCTGCGGAGTTGCTACAGATTTCATGTGACCATGGAGTCTACA  250

seq1  GGATTGACTCTGAGGCTCTGTATTTGCTTCTTTCTAGGTTAGGGTCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGACTCTGAGGCTCTGTATTTGCTTCTTTCTAGGTTAGGGTCATCT  300

seq1  AACTGATGAAACATTCTGTGTCTAGCAGTGAAGAAGCCTACAAAATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGAAACATTCTGTGTCTAGCAGTGAAGAAGCCTACAAAATACAT  350

seq1  AATAAAAAATAACTTTTTTTTATATTCATACACTAGTTTTCATCTATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATAACTTTTTTTTATATTCATACACTAGTTTTCATCTATAAC  400

seq1  TGTGTAAACAAGGTGATTTCAAACACAATTTGGTATAAAACATTGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAACAAGGTGATTTCAAACACAATTTGGTATAAAACATTGAAATA  450

seq1  AGTTATTTTCTTCTAATTATAACAAACAGGGCAGCAGTAGTTTATATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTCTTCTAATTATAACAAACAGGGCAGCAGTAGTTTATATTCC  500

seq1  TAACACGATTGATCTTACTCCTGGTTTGTTGTCTTTAATATGCAGGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACGATTGATCTTACTCCTGGTTTGTTGTCTTTAATATGCAGGGTTG  550

seq1  CCAAGCGGTTAAATGGTTGTATATTTCCCATTTAATTTCTGTAACCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCGGTTAAATGGTTGTATATTTCCCATTTAATTTCTGTAACCATGT  600

seq1  TTTCAGTGTGAAAACCTAAAATAATGGTAACCTGTCTGGAGACCCTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTGAAAACCTAAAATAATGGTAACCTGTCTGGAGACCCTAGGA  650

seq1  GAGTCATTTTGCTTCACAACTTTTAAGCAGTCAGTCATGAGAACTAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATTTTGCTTCACAACTTTTAAGCAGTCAGTCATGAGAACTAGACT  700

seq1  CTAGACGATCTTTCATATTTTAAAGTTATATGACAGATGGCTCAGTGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACGATCTTTCATATTTTAAAGTTATATGACAGATGGCTCAGTGGTT  750

seq1  AAGAACATTAGTTGTTCTCACACAGGATCCAGGTTCTCTTTCTGCCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATTAGTTGTTCTCACACAGGATCCAGGTTCTCTTTCTGCCACCC  800

seq1  ACATGGTGATACACAAACCTTTGTAACTCCAGTTCCAGGAGATTTGGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGATACACAAACCTTTGTAACTCCAGTTCCAGGAGATTTGGCCC  850

seq1  CCTCTTCTGGCTTCTGTAAGCACCAGGCATGCACAGGGTATACACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGGCTTCTGTAAGCACCAGGCATGCACAGGGTATACACACACA  900

seq1  TGTAAGCAAAACACCCATACACATAAAATTAAAAATTACAAAAAGTAATG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTAAGCAAAACACCCATACACATAAAATTAAAAATTAC-AAAAGTAATG  949

seq1  CGATGCGCTTAGAATTAACAGGGAATATAGTCAAAAATCTAGTTTAAAAA  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CGATGCGCTTAGAATTAACA-GGAATATAGTCAAAAATCTAGTTTAAAAA  998

seq1  T-GGTCAAAAAATGCCACATAGCAACAGAATTTAAATCCTCAACAGATGT  1049
      | ||||||||||||||||||||| |||| | |||||||||||||||||||
seq2  TGGGTCAAAAAATGCCACATAGC-ACAG-AGTTAAATCCTCAACAGATGT  1046

seq1  TATTTACTTCCCAAGATAAATCAAGCAATTTACTCT-ACAAAT-AAAATA  1097
      ||||||||| |||  ||||||| ||||  ||||||| |||||| ||||||
seq2  TATTTACTT-CCAGAATAAATC-AGCA--TTACTCTAACAAATAAAAATA  1092

seq1  -TCTTGCACATACACAGCAAAGAAGGAAGCATATTTTCTCAGCCTAAAAA  1146
       ||||||||||||||||||||||| |||||  | ||||||||||||||| 
seq2  TTCTTGCACATACACAGCAAAGAAAGAAGC--AATTTCTCAGCCTAAAA-  1139

seq1  TAACCAAAAAAAGGAG--CATATT  1168
        | | ||||||||||  ||||||
seq2  -TATCTAAAAAAGGAGCCCATATT  1162

seq1: chr18_48014606_48015789
seq2: B6Ng01-319B10.g_69_1242 (reverse)

seq1  CACAT-TAGTGTT-ACACGTGTTAGGAGAATGGCTTTTGCAAAGATGCTA  48
      ||||| ||||||| |||||||| |||| ||||||  | |||||| |||||
seq2  CACATATAGTGTTAACACGTGTAAGGA-AATGGC--TGGCAAAG-TGCTA  46

seq1  -CAAGCATACTGGTTAGGTAACAGTGCTGTTCCCTGGTCATGCCCCTCAA  97
       ||||||||||||||| |||||| | ||||| ||| |||||| |||||||
seq2  CCAAGCATACTGGTTAAGTAACAATACTGTT-CCTTGTCATGGCCCTCAA  95

seq1  CATCTATATTCACTGCTCACATACAAACTTATTTCTGTTGGAACAGTTAT  147
      |||||| ||| |||||||||||||||||||||||||||  |||||| |||
seq2  CATCTA-ATTAACTGCTCACATACAAACTTATTTCTGT--GAACAGGTAT  142

seq1  TTTCTCAGTAAACTAGCCCTCATTCAAATACAAGGTTAGGATTTCTTTCT  197
      |||||||||||||||| ||||||   ||||||||||||||||||||||||
seq2  TTTCTCAGTAAACTAG-CCTCAT--CAATACAAGGTTAGGATTTCTTTCT  189

seq1  TTCTGTAGGTTTCCTATGAGAAAGCAAATCAAATTTAAAGACAGTTAAAA  247
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  TTCTGTAGGTTT-CTATGAGAAAGCAAATCAAA-TTAAAGACAGTTAAAA  237

seq1  AAAAACAAACAAACTGGTAGATGAAA-CCAGTTTATTAGCATCTACCACC  296
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAAAC-AACAAACTGGTAGATGAAACCCAGTTTATTAGCATCTACCACC  286

seq1  CCATCTCCTGGGTTCCCATTTTAGATCTAATGGCTACTTTTACATAATGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCTGGGTTCCCATTTTAGATCTAATGGCTACTTTTACATAATGC  336

seq1  AGCTTAACCTAGTTTAGGAACACTGGTTCAAGTACTTACAAACCAAACCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAACCTAGTTTAGGAACACTGGTTCAAGTACTTACAAACCAAACCC  386

seq1  TTGATGAGAAAATGCCAGGCAGGGATGAGGAGTGGACTTAATGATTCCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAGAAAATGCCAGGCAGGGATGAGGAGTGGACTTAATGATTCCAG  436

seq1  AGCTGCTTGATTTTGATCCTGTGTTCTGTCTTCCTGGTTAGGGCTCTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTGATTTTGATCCTGTGTTCTGTCTTCCTGGTTAGGGCTCTCTT  486

seq1  TTTGCTGACTGCTAAGAAAATGCCACTTGGCCCTTATGGGGTTAATTCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGACTGCTAAGAAAATGCCACTTGGCCCTTATGGGGTTAATTCAC  536

seq1  CCATTTTAAGATTCTTACATGGAAAGGCCCAAATCTTTTCTTGTTTTTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAAGATTCTTACATGGAAAGGCCCAAATCTTTTCTTGTTTTTCC  586

seq1  TCTTTAAGACTAAAGTAGAAGTTTTCTAAAATAGATTTAGTTTAATCAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGACTAAAGTAGAAGTTTTCTAAAATAGATTTAGTTTAATCAGT  636

seq1  AACATGAGCCACTCTGTGGGAATGTTAGAGATTTAATAATGAACAAAGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAGCCACTCTGTGGGAATGTTAGAGATTTAATAATGAACAAAGCA  686

seq1  CACTTTTCATGGGTTAGAAAACCCATGAAAATATTTCTTTGGGAAATATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCATGGGTTAGAAAACCCATGAAAATATTTCTTTGGGAAATATA  736

seq1  TTACACAGAACTCGTCAGTTTTATTTTCTTTCTGTATTGTGTTCTACAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGAACTCGTCAGTTTTATTTTCTTTCTGTATTGTGTTCTACAGA  786

seq1  ACGCTCAGTACACATATTGCCCTGAGATGGTGAGTTAGCAGAATCATACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCAGTACACATATTGCCCTGAGATGGTGAGTTAGCAGAATCATACA  836

seq1  AACAACAGAACTAAAGATTATTGGCATGTCTTGCCAAATTCCCAACACTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGAACTAAAGATTATTGGCATGTCTTGCCAAATTCCCAACACTT  886

seq1  TATCTAATACCCCCATTTAGACTCTGCCCTGAAATCAGGACTTTCTGATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATACCCCCATTTAGACTCTGCCCTGAAATCAGGACTTTCTGATG  936

seq1  ATCCTGTAACCTGCAATGTGTTGTGTCCTTTCTGCCTCTGAGATTTAGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTAACCTGCAATGTGTTGTGTCCTTTCTGCCTCTGAGATTTAGTA  986

seq1  ATGGGGGGTTGGGGGGGGAGGACATTTCTATGGATGCCACTTCTTCTTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGGTTGGGGGGGGAGGACATTTCTATGGATGCCACTTCTTCTTTG  1036

seq1  AGACCTCCAGACTAGAATGAATCACCGAGTCATCACAAGAAAAGGGCATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCAGACTAGAATGAATCACCGAGTCATCACAAGAAAAGGGCATG  1086

seq1  TTTTGTCTCAGGAACAACTCTCTTATGTCCGTAGAGCTTCCCTTTCCTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTCAGGAACAACTCTCTTATGTCCGTAGAGCTTCCCTTTCCTTA  1136

seq1  TGTAAACCAAGGTGTTCTCCCACCTCTCTGAAGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCAAGGTGTTCTCCCACCTCTCTGAAGAATTC  1174