BAC Information

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BAC

Clone NameB6Ng01-319G16
Chromosome18 (Build37)
Map Location 48,020,069 - 48,192,218
singlet/doubletdoublet
Overlap genenone
Upstream gene4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
Downstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319G16.bB6Ng01-319G16.g
ACCGA109053GA109054
length1,1761,136
definitionB6Ng01-319G16.b B6Ng01-319G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,020,069 - 48,021,253)(48,191,081 - 48,192,218)
sequence
gaattcttattacaagatgtattccagtccagtgaaaccataaaaacaaa
ataccccagattagaaaaaaattaactttttaaacataagaccaacaatg
caaaaaaacaaaagtcattgaactcaacaaaatagcagtggagcaaaaga
ctttgggatgttggaaagccacttcacccccactttttatgtagagctaa
atttatcttaccataataatttatcatagggggtaaaacaattgtctctt
ctaaaagtacatttaaaaaattggagaaccatagaatcttaaatatagaa
tgtaattcagtatctttttgtctactgttcctcttaagaggctttgggtt
gcctcaaaaacagactctaagacaaaaacttttgtattactgctataata
gagggctttagtgaagcagagctccatagtaaggggcataacaaaatggg
gaaggagacaggaagacctcttgtcaagcctattgctactaaaggatcct
atttgcgggactctcaatacatttaaaccctgtcccaggtagtcattttg
agtggggagtaactaagaatatgtttattgtatagtttaataattttctt
tttctgtctttactgactatgttgcttagctacctgcatacattcttgct
gatttactacaatttcaacaatgtctcacatttattcaaagctttcctta
caaagggaaacccttgcccacagttacattaccttttccctggacaatta
tggcattctgatgactgagtctacctcatacgtcactatcaggttagtct
tatattcatcctcctcacagaattatctgcaattcttcatctaggctctc
catgagttagctgacattcttgtgtctgcatgggccaccaatgatgaact
aatgtataagaaataaaaaattcatttcaaatcggattaagcaaaataag
gacatactatacatcaagcaggagtccattatcacttagttcccatggtg
cttgtgcatagttgttttgagccacatattttctttgtgttgctgataat
atctaagtgatgaaaacagttgtagaacattttagttcagggaccacact
agaacagtgtctacttcttctataccttagtaaaggaatgtttgcttaac
tcataaaggaccctttgatcctaatc

gaattctttgttcagttctgagccccatttttaagggggttatttgattt
tctgaggtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccagtctgttggtggtctt
tttgtcttatagacagtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgagggaag
ggtttttctatagctagaaaaacataaaagccaattgcattaaaatctct
cgttagatgggttagaggaaacagccagttatagtgacaaattttggact
gataattggattacagaggagttgtaagtttaatgacagcagtagagtgt
gatcaagcaatgttcacttttttctccataactcagctgccgagtgcaca
tataccagagatcccttcgaactgccctgtgtagactctaaaataaaatt
aaaagagagatttaaaaacaaccaagaactctataagaatctcagctgtc
ttcttcagagaaaattgaaaatgtactctgaccctactaaaaatacaaaa
taaacaactgcagtccgaaataaactatccccatttgatgactacttatt
tccaaggagttccggttgccagtccaagctggtgctatgatattcccata
cctgattaagagacaaacagtgtagtgttcctgtgatgagtgatgttgac
taatttcacagtcaccagcctatgtgctgcttaggctgattcagaattac
cattgacatcagagccatcagattggaacttgccagctgatatcactcac
ttctggcgtatcctgtgtacaatggtttcctaggtctagcggggccatat
tttccatgctgtttttgtacacatttctatgcactgaaacatgacaatga
ccaatattatttcctcaagtctggaaggttagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48020069_48021253
seq2: B6Ng01-319G16.b_45_1220

seq1  GAATTCTTATTACAAGATGTATTCCAGTCCAGTGAAACCATAAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTACAAGATGTATTCCAGTCCAGTGAAACCATAAAAACAAA  50

seq1  ATACCCCAGATTAGAAAAAAATTAACTTTTTAAACATAAGACCAACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCAGATTAGAAAAAAATTAACTTTTTAAACATAAGACCAACAATG  100

seq1  CAAAAAAACAAAAGTCATTGAACTCAACAAAATAGCAGTGGAGCAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACAAAAGTCATTGAACTCAACAAAATAGCAGTGGAGCAAAAGA  150

seq1  CTTTGGGATGTTGGAAAGCCACTTCACCCCCACTTTTTATGTAGAGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGATGTTGGAAAGCCACTTCACCCCCACTTTTTATGTAGAGCTAA  200

seq1  ATTTATCTTACCATAATAATTTATCATAGGGGGTAAAACAATTGTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTTACCATAATAATTTATCATAGGGGGTAAAACAATTGTCTCTT  250

seq1  CTAAAAGTACATTTAAAAAATTGGAGAACCATAGAATCTTAAATATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTACATTTAAAAAATTGGAGAACCATAGAATCTTAAATATAGAA  300

seq1  TGTAATTCAGTATCTTTTTGTCTACTGTTCCTCTTAAGAGGCTTTGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCAGTATCTTTTTGTCTACTGTTCCTCTTAAGAGGCTTTGGGTT  350

seq1  GCCTCAAAAACAGACTCTAAGACAAAAACTTTTGTATTACTGCTATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAAAACAGACTCTAAGACAAAAACTTTTGTATTACTGCTATAATA  400

seq1  GAGGGCTTTAGTGAAGCAGAGCTCCATAGTAAGGGGCATAACAAAATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTTTAGTGAAGCAGAGCTCCATAGTAAGGGGCATAACAAAATGGG  450

seq1  GAAGGAGACAGGAAGACCTCTTGTCAAGCCTATTGCTACTAAAGGATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGACAGGAAGACCTCTTGTCAAGCCTATTGCTACTAAAGGATCCT  500

seq1  ATTTGCGGGACTCTCAATACATTTAAACCCTGTCCCAGGTAGTCATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCGGGACTCTCAATACATTTAAACCCTGTCCCAGGTAGTCATTTTG  550

seq1  AGTGGGGAGTAACTAAGAATATGTTTATTGTATAGTTTAATAATTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGAGTAACTAAGAATATGTTTATTGTATAGTTTAATAATTTTCTT  600

seq1  TTTCTGTCTTTACTGACTATGTTGCTTAGCTACCTGCATACATTCTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTTTACTGACTATGTTGCTTAGCTACCTGCATACATTCTTGCT  650

seq1  GATTTACTACAATTTCAACAATGTCTCACATTTATTCAAAGCTTTCCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTACAATTTCAACAATGTCTCACATTTATTCAAAGCTTTCCTTA  700

seq1  CAAAGGGAAACCCTTGCCCACAGTTACATTACCTTTTCCCTGGACAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAAACCCTTGCCCACAGTTACATTACCTTTTCCCTGGACAATTA  750

seq1  TGGCATTCTGATGACTGAGTCTACCTCATACGTCACTATCAGGTTAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCTGATGACTGAGTCTACCTCATACGTCACTATCAGGTTAGTCT  800

seq1  TATATTCATCCTCCTCACAGAATTATCTGCAATTCTTCATCTAGGCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATCCTCCTCACAGAATTATCTGCAATTCTTCATCTAGGCTCTC  850

seq1  CATGAGTTAGCTGACATTCTTGTGTCTGCATGGGCCACCAATGATGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTAGCTGACATTCTTGTGTCTGCATGGGCCACCAATGATGAACT  900

seq1  AATGTATAAGAAATAAAAAATTCATTTCAAATCGGATTAAGCAAAATAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATAAGAAATAAAAAATTCATTTCAAATCGGATTAAGCAAAATAAG  950

seq1  GACATACTATACATCAAGCAGGAGTCCATTATCACTTAGTTCCCATGGTT  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACATACTATACATCAAGCAGGAGTCCATTATCACTTAGTTCCCATGG-T  999

seq1  GCTTGTGCATAGTTGTTTTGAG-CACATATTTTCTTTGTGTTGCTGGATA  1049
      |||||||||||||||||||||| |||||||||||||||||||||||   |
seq2  GCTTGTGCATAGTTGTTTTGAGCCACATATTTTCTTTGTGTTGCTGATAA  1049

seq1  TATCTTAAAGTTGATGAAAAACAGTTGTAG-ACATTTTAAGTTCAGGGAC  1098
      |||||  ||| ||||| ||||||||||||| ||||||| |||||||||||
seq2  TATCT--AAG-TGATG-AAAACAGTTGTAGAACATTTT-AGTTCAGGGAC  1094

seq1  CAACACTAGAACAGTGTCTACTTCTTCTAATACTTAAGTAAAAAGAAATG  1148
      | |||||||||||||||||||||||||| |||| | |||  |||| ||||
seq2  C-ACACTAGAACAGTGTCTACTTCTTCT-ATACCTTAGT--AAAGGAATG  1140

seq1  TTTGCTAAAACTCAATAAAGGACCCTTTGAT-CTAATC  1185
      ||||||  ||||| ||||||||||||||||| ||||||
seq2  TTTGCT-TAACTC-ATAAAGGACCCTTTGATCCTAATC  1176


seq1: chr18_48191081_48192218
seq2: B6Ng01-319G16.g_70_1205 (reverse)

seq1  AGTGCTACCTTTCCCAGACTTGAAGGATAT-ATA-TGGTCATTGTCATAG  48
      ||||||| | || ||||||||| |||| || ||| ||||||||||||| |
seq2  AGTGCTAACCTT-CCAGACTTG-AGGAAATAATATTGGTCATTGTCAT-G  47

seq1  TTTCAGTGCATAGAAATGTGTTACAAAACAGCATGGAAAATATGGCCCCG  98
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  TTTCAGTGCATAGAAATGTGTACAAAAACAGCATGGAAAATATGGCCCCG  97

seq1  CTAGACCTAGGAAACCATTTGTACACAGGATACG-CAGAAGTGAGTGATA  147
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  CTAGACCTAGGAAACCA-TTGTACACAGGATACGCCAGAAGTGAGTGATA  146

seq1  TCAGCTGGCAAGTTCCAATCTGATGGCTTCTGATGTCAATGGTAATTCTG  197
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAGCTGGCAAGTTCCAATCTGATGGC-TCTGATGTCAATGGTAATTCTG  195

seq1  AATCAGCCTAAGCAGCACATAGGCTGGTGACTGTGAAATTAGTCAACATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCTAAGCAGCACATAGGCTGGTGACTGTGAAATTAGTCAACATC  245

seq1  ACTCATCACAGGAACACTACACTGTTTGTCTCTTAATCAGGTATGGGAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCACAGGAACACTACACTGTTTGTCTCTTAATCAGGTATGGGAAT  295

seq1  ATCATAGCACCAGCTTGGACTGGCAACCGGAACTCCTTGGAAATAAGTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCACCAGCTTGGACTGGCAACCGGAACTCCTTGGAAATAAGTAG  345

seq1  TCATCAAATGGGGATAGTTTATTTCGGACTGCAGTTGTTTATTTTGTATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAATGGGGATAGTTTATTTCGGACTGCAGTTGTTTATTTTGTATT  395

seq1  TTTAGTAGGGTCAGAGTACATTTTCAATTTTCTCTGAAGAAGACAGCTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAGGGTCAGAGTACATTTTCAATTTTCTCTGAAGAAGACAGCTGA  445

seq1  GATTCTTATAGAGTTCTTGGTTGTTTTTAAATCTCTCTTTTAATTTTATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTATAGAGTTCTTGGTTGTTTTTAAATCTCTCTTTTAATTTTATT  495

seq1  TTAGAGTCTACACAGGGCAGTTCGAAGGGATCTCTGGTATATGTGCACTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTCTACACAGGGCAGTTCGAAGGGATCTCTGGTATATGTGCACTC  545

seq1  GGCAGCTGAGTTATGGAGAAAAAAGTGAACATTGCTTGATCACACTCTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGAGTTATGGAGAAAAAAGTGAACATTGCTTGATCACACTCTAC  595

seq1  TGCTGTCATTAAACTTACAACTCCTCTGTAATCCAATTATCAGTCCAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCATTAAACTTACAACTCCTCTGTAATCCAATTATCAGTCCAAAA  645

seq1  TTTGTCACTATAACTGGCTGTTTCCTCTAACCCATCTAACGAGAGATTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACTATAACTGGCTGTTTCCTCTAACCCATCTAACGAGAGATTTT  695

seq1  AATGCAATTGGCTTTTATGTTTTTCTAGCTATAGAAAAACCCTTCCCTCG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATTGGCTTTTATGTTTTTCTAGCTATAGAAAAACCCTTCCCTCG  745

seq1  ATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAA  795

seq1  CTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAA  845

seq1  AAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAA  895

seq1  TGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTC  945

seq1  CAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACC  995

seq1  AACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAA  1045

seq1  TATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAAT  1095

seq1  AACCCCCTTAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCTTAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1136


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