BAC Information

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BAC

Clone NameB6Ng01-319I23
Chromosome18 (Build37)
Map Location 71,212,585 - 71,357,834
singlet/doubletdoublet
Overlap genenone
Upstream geneRab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneDcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319I23.bB6Ng01-319I23.g
ACCGA109157GA109158
length7461,138
definitionB6Ng01-319I23.b B6Ng01-319I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,212,585 - 71,213,331)(71,356,688 - 71,357,834)
sequence
gaattctccacatatcttcgtatgttcccatggtttgcagtagactctag
gagaacacatgctagaatgctggattgctcactgtctctaactttgaaca
ccgaggatcaggaaactccagcttttgccataaaacagttaggtatcctg
agaaatctgaatgtaatcactgcaatttagcaattcaactccgtaacctt
aatttttatctattcattgggaaataaaaactaatttggttgtgggtctg
gtttgataatcattgtatgcatattttcatctatctgtgcatctttccat
agtttcatatttctatacgatttctagcaatactttacttggtcttttag
ctgttgattgaatggaatatatacatacatacatacatacatacatacat
acatatatatatatatatatatatatatatatatatatatatatatatgc
atgcctgcctttactctttattatgtgtatgtttgtttcacatatccaaa
gccttcatgaacatgaactaaatcagcgcatttttctccctccactttag
ccagtatctgttgtgttttctttcaatatagaaggcagattgagtgatca
gaactgataaattatatatttctctacaccctcaaaaccccatgtgtgtc
tagtcacctcttagcacatctacttttcttctggggggggggggtggact
gttttgtatatatatatagaagtaaaagagtttgtatgtgggtatt

gaattcatatctttggtctgaaattttaaaacaaaataataaaaataaat
ttactgttatgttaaaaataaggaatatagaaagattaaatgtaagtctt
taaaattctaaatattgagatggaattcaatggattttattagtagattt
tattttttgtggtttcatatttatgattatattaacttgaaaccatttct
aagtggcttactacaatacaaaatattttgttgagcctcatggtagcaat
aaagaaaatttataatctaagactgaaaaataataagaagcaaaaatact
ccatagactaaactaacaacaaaggaatctggaaggaaggaatgaaaaga
atggaaggaaatgaggggagaaaaagctcaacaatttataagatggctgt
aggaaaccttacctctctgtaattatttaactggaagtggatgacattct
ctaatcaaaagattaaactgaaaaatgtaagtgaagaaagcacaccgtta
cgttgttcacaagaaattcaattctacaaacacaaagtgaaaaagatgca
atcagatattttatgtaaatggaataatgaaacactaacaaacatacata
gataaaatgtatcttaaataaagatcaacaaaaagatgcatgaaggatga
agatgagacattcatgtttaagggcactggctgctctcctgaagttcctg
ggttgattttggtaccctcatggcagcttacaaaggtctcaactccagcc
ccaggagatgggatgccttctgccctccatgggccctgtaatgcacttag
tgcacagataagcatgcagccaaatcactcatatacttcaaaataaacaa
agtagaaaaaagtgttaaaaggttattctataaccataaagtggcaactc
aacaagaagaattaataattctatacatagatatacttataatctctaat
atcattatgtctaaatataaaatactagttatttgatcagactgggtaga
cttagacctgtagtctaggctaacttactttcttagtttatctaacaaag
aaaatggggaggtaagtgaggactagaacaacggtcaaatgatatctaag
aagtattcatcgacatgttagaatgtactcttctcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71212585_71213331
seq2: B6Ng01-319I23.b_48_793

seq1  GAATTCTCCACATATCTTCGTATGTTCCCATGGTTTGCAGTAGACTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACATATCTTCGTATGTTCCCATGGTTTGCAGTAGACTCTAG  50

seq1  GAGAACACATGCTAGAATGCTGGATTGCTCACTGTCTCTAACTTTGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACATGCTAGAATGCTGGATTGCTCACTGTCTCTAACTTTGAACA  100

seq1  CCGAGGATCAGGAAACTCCAGCTTTTGCCATAAAACAGTTAGGTATCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGATCAGGAAACTCCAGCTTTTGCCATAAAACAGTTAGGTATCCTG  150

seq1  AGAAATCTGAATGTAATCACTGCAATTTAGCAATTCAACTCCGTAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGAATGTAATCACTGCAATTTAGCAATTCAACTCCGTAACCTT  200

seq1  AATTTTTATCTATTCATTGGGAAATAAAAACTAATTTGGTTGTGGGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATCTATTCATTGGGAAATAAAAACTAATTTGGTTGTGGGTCTG  250

seq1  GTTTGATAATCATTGTATGCATATTTTCATCTATCTGTGCATCTTTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATAATCATTGTATGCATATTTTCATCTATCTGTGCATCTTTCCAT  300

seq1  AGTTTCATATTTCTATACGATTTCTAGCAATACTTTACTTGGTCTTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATATTTCTATACGATTTCTAGCAATACTTTACTTGGTCTTTTAG  350

seq1  CTGTTGATTGAATGGAATATATACATACATACATACATACATACATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGATTGAATGGAATATATACATACATACATACATACATACATACAT  400

seq1  ACATATATATATATATATATATATATATATATATATATATATATATATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATATATATATATATATATATATATATATATATATATATGC  450

seq1  ATGCCTGCCTTTACTCTTTATTATGTGTATGTTTGTTTCACATATCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCTTTACTCTTTATTATGTGTATGTTTGTTTCACATATCCAAA  500

seq1  GCCTTCATGAACATGAACTAAATCAGCGCATTTTTCTCCCTCCACTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATGAACATGAACTAAATCAGCGCATTTTTCTCCCTCCACTTTAG  550

seq1  CCAGTATCTGTTGTGTTTTCTTTCAATATAGAAGGCAGATTGAGTGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATCTGTTGTGTTTTCTTTCAATATAGAAGGCAGATTGAGTGATCA  600

seq1  GAACTGATAAATTATATATTTCTCTACACCCTCAAAACCCCATGTGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATAAATTATATATTTCTCTACACCCTCAAAACCCCATGTGTGTC  650

seq1  TAGTCACCTCTTAGCACATCTACTTTTCTTCT-GGGGGGGGGGGTGGACT  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGTCACCTCTTAGCACATCTACTTTTCTTCTGGGGGGGGGGGGTGGACT  700

seq1  GATTTGGAGATGACCCAGAGAGCCTGATATGTATGGTATGTGGGTATT  747
      | |||| | || |   | |||   | | |    | |||||||||||||
seq2  GTTTTGTATAT-ATATATAGA-AGTAAAAGAGTTTGTATGTGGGTATT  746


seq1: chr18_71356688_71357834
seq2: B6Ng01-319I23.g_67_1204 (reverse)

seq1  TTTGAGAAGGATGTACATTTTTAACATGTTGGATGGAATACTCTTTAGAT  50
      |||||||||   ||||| || ||||||| | ||| |||||||  ||||||
seq2  TTTGAGAAG--AGTACA-TTCTAACATG-TCGAT-GAATACTTCTTAGAT  45

seq1  ATCATTTGGAACATTGGTCTAGTCTTCACTTTAACCCTCCCA-TTTCTTT  99
      ||||||| || | ||| ||||||| ||||||  |||  |||| |||||||
seq2  ATCATTT-GACCGTTGTTCTAGTCCTCACTT--ACCTCCCCATTTTCTTT  92

seq1  G-TAGATTAAACTAGGAAGTAAAGTTAGCCTAGAACTACAGGTCTAAGTC  148
      | |||| ||||||| |||   |||||||||||| ||||||||||||||||
seq2  GTTAGA-TAAACTAAGAAAGTAAGTTAGCCTAG-ACTACAGGTCTAAGTC  140

seq1  TA-CCAGTCTGATCAAATTAACTAGTATTTTATATTTAGACATAATGATA  197
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TACCCAGTCTGATCAAA-TAACTAGTATTTTATATTTAGACATAATGATA  189

seq1  TTAGAGATTATAAGTATATCTATGTATAGAATTATTAATTCTTCTTGTTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATTATAAGTATATCTATGTATAGAATTATTAATTCTTCTTGTTG  239

seq1  AGTTGCCCACTTTATGGTTATAGAATAACCTTTTAACACTTTTTTCTACT  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTG-CCACTTTATGGTTATAGAATAACCTTTTAACACTTTTTTCTACT  288

seq1  TTGTTTATTTTGAAGTATATGAGTGATTTGGCTGCATGCTTATCTGTGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTTTGAAGTATATGAGTGATTTGGCTGCATGCTTATCTGTGCA  338

seq1  CTAAGTGCATTACAGGGCCCATGGAGGGCAGAAGGCATCCCATCTCCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCATTACAGGGCCCATGGAGGGCAGAAGGCATCCCATCTCCTGG  388

seq1  GGCTGGAGTTGAGACCTTTGTAAGCTGCCATGAGGGTACCAAAATCAACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGTTGAGACCTTTGTAAGCTGCCATGAGGGTACCAAAATCAACC  438

seq1  CAGGAACTTCAGGAGAGCAGCCAGTGCCCTTAAACATGAATGTCTCATCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTTCAGGAGAGCAGCCAGTGCCCTTAAACATGAATGTCTCATCT  488

seq1  TCATCCTTCATGCATCTTTTTGTTGATCTTTATTTAAGATACATTTTATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTCATGCATCTTTTTGTTGATCTTTATTTAAGATACATTTTATC  538

seq1  TATGTATGTTTGTTAGTGTTTCATTATTCCATTTACATAAAATATCTGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTTTGTTAGTGTTTCATTATTCCATTTACATAAAATATCTGAT  588

seq1  TGCATCTTTTTCACTTTGTGTTTGTAGAATTGAATTTCTTGTGAACAACG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTTTTCACTTTGTGTTTGTAGAATTGAATTTCTTGTGAACAACG  638

seq1  TAACGGTGTGCTTTCTTCACTTACATTTTTCAGTTTAATCTTTTGATTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGTGTGCTTTCTTCACTTACATTTTTCAGTTTAATCTTTTGATTAG  688

seq1  AGAATGTCATCCACTTCCAGTTAAATAATTACAGAGAGGTAAGGTTTCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTCATCCACTTCCAGTTAAATAATTACAGAGAGGTAAGGTTTCCT  738

seq1  ACAGCCATCTTATAAATTGTTGAGCTTTTTCTCCCCTCATTTCCTTCCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATCTTATAAATTGTTGAGCTTTTTCTCCCCTCATTTCCTTCCAT  788

seq1  TCTTTTCATTCCTTCCTTCCAGATTCCTTTGTTGTTAGTTTAGTCTATGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATTCCTTCCTTCCAGATTCCTTTGTTGTTAGTTTAGTCTATGG  838

seq1  AGTATTTTTGCTTCTTATTATTTTTCAGTCTTAGATTATAAATTTTCTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTGCTTCTTATTATTTTTCAGTCTTAGATTATAAATTTTCTTT  888

seq1  ATTGCTACCATGAGGCTCAACAAAATATTTTGTATTGTAGTAAGCCACTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTACCATGAGGCTCAACAAAATATTTTGTATTGTAGTAAGCCACTT  938

seq1  AGAAATGGTTTCAAGTTAATATAATCATAAATATGAAACCACAAAAAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGTTTCAAGTTAATATAATCATAAATATGAAACCACAAAAAATA  988

seq1  AAATCTACTAATAAAATCCATTGAATTCCATCTCAATATTTAGAATTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACTAATAAAATCCATTGAATTCCATCTCAATATTTAGAATTTTA  1038

seq1  AAGACTTACATTTAATCTTTCTATATTCCTTATTTTTAACATAACAGTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTACATTTAATCTTTCTATATTCCTTATTTTTAACATAACAGTAA  1088

seq1  ATTTATTTTTATTATTTTGTTTTAAAATTTCAGACCAAAGATATGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTATTATTTTGTTTTAAAATTTCAGACCAAAGATATGAATTC  1138


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