BAC Information

Click to search

BAC

Clone NameB6Ng01-320G07
Chromosome18 (Build37)
Map Location 21,038,632 - 21,161,651
singlet/doubletdoublet
Overlap geneD030074E01Rik, Rnf125, Rnf138
Upstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6
Downstream geneMep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14, 4921528I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320G07.bB6Ng01-320G07.g
ACCGA109769GA109770
length1,1911,093
definitionB6Ng01-320G07.b B6Ng01-320G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,038,632 - 21,039,797)(21,160,561 - 21,161,651)
sequence
gaattcactatgtaaaccaagctgtcctcaaacgcagacaccctcctgct
ttttcagggattaaaagcacgcaccaccacatctgttttcaaagaaattg
ttttaaaacaaaacaaaacaaaaaaaccaacaaacagtaaaatttcaata
caagagtcaatataaagtatgaaggacaaaaatctgcaatattcataaaa
ataatcagagcactgactagccattcaaattctacatccaactaagaatt
gttccaggggcaggaggtggggaatggagaacaccttcaaataaagaatt
caaaaacattcacaagactaaagaccatgcaagatcagatggttgcagtt
gatcactgccaggagctcagaagacctgagtggcccaatgtgcatctcca
acacacactaataaagatggtggtgacactaatcgagtgacataaagtaa
gagaaggaaagaaacactcgaggatgacaactgaggagagtgtcttggag
agtcaccagacaagagaggagtagaacattttcaacttcctttttctttt
cttttctttttcctgacagggtttctctgtacacagaaaaacccctgtcc
tgtctgtcctggaactcactctgtcaccaggctggcctactgggagcaag
cctcctgtctaagattacatgcatgagccaccattcactgcagtctttag
actttattcctaatcactcctttcctcccatttttttttcatagcttggg
gtcatgcacatactatgcaagtttgaaattatacaataaacatgtacgca
catgactctggaaaagaacccccggaaataactaaaaatatttttgcccc
ccaaagtattttcaacttccctgggggaatgatatcctcactgggagaca
ccagtggagcggggaaaaggcctctgaaaggagattttcaataaaggaac
cttcctgaactgacctgacaaagtttcaaagttcagaacttcaaaggagg
tttgagagaatacaaagacacttgagaaaatggtttaagatgattactag
catctgataaacaaaaagaaaagcccttttaacaccctagaatttagttc
gttactacctacctgcaaacacggattgttcactagaacttacggacact
ggccacatggctgcataaaggtaggactaaatgtaatcacc
gaattcttttcagctatttgaaaacacagaactttttcaggccccacctg
ccaaaaattcatttctaacttcgggatggagcctaggaactggttatctt
tgctataaagagtccctctggggagcctatcccctattcgttcaatccca
gaggcaggtggattactgtgagttgaagccagtcagagctacatgagacc
ttgtcacacacattaaagaaaaagttcctcgagggctctgctcatcactc
gggcttgtcagatgcttagtgtacgttctcaagggctggctccaactccc
actgacactggttgtcctgaaaatgactgaaattctttctatgccaacta
agacctacctcaagtcaccttgcccagcccagccagcgcctttgtgctcc
atccacctcatccctggaggaaacacctcctctaacagaacggtatcttg
cctccattcttgtcatcacccagcaataataaacataaggagagcacaaa
gggagctatctcgagccccggaaatcctgccggttcggggtgggagaagg
aagctagctcatcttgggccgttttatcactgaattgttaaattagctca
aggatggggctgagcgggcgtgcaaggggggcggggacgctgctgctgac
accgacagggctaggggctacaaagccaaggaaagccaagaaaagcgcgg
cacccccggcaggtagcccggcgggcccgcacacctctgcagggcccagg
ccgagcacccaacgcccgggtctccacaaggattgctaggaaacaaaaaa
ggctccacgttctctgtgattcctctcgggcctggcgaggacgccgaggg
acgcagggcccgagcaccgcccccgggtgcaggaagctggcgaccaggac
gagaccaggggggtgcggggcacgggttcggaggggccgggccgggccgg
ggcgccgccacgagggaagggcgtccacctcacacgtgctgacagccgcg
gtccgccaccggcgtcttgagcacctcctgacagaacaggcagtagaaat
catctccgtgtagggacgtggccgcccggaagttctcggacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21038632_21039797
seq2: B6Ng01-320G07.b_44_1234

seq1  GAATTCACTATGTAAACCAAGCTGTCCTCAAACGCAGACACCCTCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAAACCAAGCTGTCCTCAAACGCAGACACCCTCCTGCT  50

seq1  TTTTCAGGGATTAAAAGCACGCACCACCACATCTGTTTTCAAAGAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGGATTAAAAGCACGCACCACCACATCTGTTTTCAAAGAAATTG  100

seq1  TTTTAAAACAAAACAAAACAAAAAAACCAACAAACAGTAAAATTTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACAAAACAAAACAAAAAAACCAACAAACAGTAAAATTTCAATA  150

seq1  CAAGAGTCAATATAAAGTATGAAGGACAAAAATCTGCAATATTCATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCAATATAAAGTATGAAGGACAAAAATCTGCAATATTCATAAAA  200

seq1  ATAATCAGAGCACTGACTAGCCATTCAAATTCTACATCCAACTAAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGAGCACTGACTAGCCATTCAAATTCTACATCCAACTAAGAATT  250

seq1  GTTCCAGGGGCAGGAGGTGGGGAATGGAGAACACCTTCAAATAAAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGGGCAGGAGGTGGGGAATGGAGAACACCTTCAAATAAAGAATT  300

seq1  CAAAAACATTCACAAGACTAAAGACCATGCAAGATCAGATGGTTGCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACATTCACAAGACTAAAGACCATGCAAGATCAGATGGTTGCAGTT  350

seq1  GATCACTGCCAGGAGCTCAGAAGACCTGAGTGGCCCAATGTGCATCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTGCCAGGAGCTCAGAAGACCTGAGTGGCCCAATGTGCATCTCCA  400

seq1  ACACACACTAATAAAGATGGTGGTGACACTAATCGAGTGACATAAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTAATAAAGATGGTGGTGACACTAATCGAGTGACATAAAGTAA  450

seq1  GAGAAGGAAAGAAACACTCGAGGATGACAACTGAGGAGAGTGTCTTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAAAGAAACACTCGAGGATGACAACTGAGGAGAGTGTCTTGGAG  500

seq1  AGTCACCAGACAAGAGAGGAGTAGAACATTTTCAACTTCCTTTTTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCAGACAAGAGAGGAGTAGAACATTTTCAACTTCCTTTTTCTTTT  550

seq1  CTTTTCTTTTTCCTGACAGGGTTTCTCTGTACACAGAAAAACCCCTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTCCTGACAGGGTTTCTCTGTACACAGAAAAACCCCTGTCC  600

seq1  TGTCTGTCCTGGAACTCACTCTGTCACCAGGCTGGCCTACTGGGAGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCCTGGAACTCACTCTGTCACCAGGCTGGCCTACTGGGAGCAAG  650

seq1  CCTCCTGTCTAAGATTACATGCATGAGCCACCATTCACTGCAGTCTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTCTAAGATTACATGCATGAGCCACCATTCACTGCAGTCTTTAG  700

seq1  ACTTTATTCCTAATCACTCCTTTCCTCCCA-TTTTTTTTCATAGCTTGGG  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTTTATTCCTAATCACTCCTTTCCTCCCATTTTTTTTTCATAGCTTGGG  750

seq1  GTCATGCACATACTATGCAAGTTTGAAATTATACAATAAACATGTACGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCACATACTATGCAAGTTTGAAATTATACAATAAACATGTACGCA  800

seq1  CATGACTCTGGAAAAGAACCCCC-GAAATAACT-AAAATA-TTTTGCCCC  846
      ||||||||||||||||||||||| ||||||||| |||||| |||||||||
seq2  CATGACTCTGGAAAAGAACCCCCGGAAATAACTAAAAATATTTTTGCCCC  850

seq1  CCAAAGTAATTTTCAAC-TCCCTGGGG--ATGATATCCTCACT-GGAGAC  892
      ||||||| ||||||||| |||||||||  |||||||||||||| ||||||
seq2  CCAAAGT-ATTTTCAACTTCCCTGGGGGAATGATATCCTCACTGGGAGAC  899

seq1  ACCAGT-GAGCGGG--AAAAGCCTCTGAAAGGAGA-TTTCAATAAA-GAA  937
      |||||| |||||||  ||| ||||||||||||||| |||||||||| |||
seq2  ACCAGTGGAGCGGGGAAAAGGCCTCTGAAAGGAGATTTTCAATAAAGGAA  949

seq1  CC-TCCTGAAACTGACCTGACAA--GTTCAAAG-TCAG-ACT--CAAGGA  980
      || ||||| ||||||||||||||   ||||||| |||| |||   |||||
seq2  CCTTCCTG-AACTGACCTGACAAAGTTTCAAAGTTCAGAACTTCAAAGGA  998

seq1  GG-TTGAGAGAATACAAAGGACAC-TGAGAAAAATGTTAAAGATGATTAC  1028
      || ||||||||||||||| ||||| ||||||||  ||| |||||||||||
seq2  GGTTTGAGAGAATACAAA-GACACTTGAGAAAATGGTTTAAGATGATTAC  1047

seq1  TAGCATCTGATAAAACAAAAG-AAAGCCCTTTTAACAACCTAG-ATTTAG  1076
      ||||||||||||||  ||||| ||||||||||||||| ||||| ||||||
seq2  TAGCATCTGATAAACAAAAAGAAAAGCCCTTTTAACACCCTAGAATTTAG  1097

seq1  -TCG-TACATACTA-CTGCAAACAGGGAATGTTAACCAGAAACTACGGAC  1123
       ||| |||   ||| ||||||||| ||| |||| || ||||  |||||||
seq2  TTCGTTACTACCTACCTGCAAACACGGATTGTTCACTAGAACTTACGGAC  1147

seq1  ACT-GCACCATGTGCTGCATAAAAGTTAAGACTAAATG--ATCACC  1166
      ||| ||  |||| ||||||| |||| || |||||||||  ||||||
seq2  ACTGGCCACATG-GCTGCAT-AAAGGTAGGACTAAATGTAATCACC  1191

seq1: chr18_21160561_21161651
seq2: B6Ng01-320G07.g_67_1159 (reverse)

seq1  ATGTCCGAGGAACTTTC-GGCGGCCACGT-CCTACACGGAAGATGATTTC  48
      |||||||| |||||| | ||||||||||| ||||||||| ||||||||||
seq2  ATGTCCGA-GAACTTCCGGGCGGCCACGTCCCTACACGG-AGATGATTTC  48

seq1  TACTGCCCTGTCTGTCAGGAGGTGCTCAAGACGCCGGT-GCGGACCGCGG  97
      |||||||   |||||||||||||||||||||||||||| |||||||||||
seq2  TACTGCCTGTTCTGTCAGGAGGTGCTCAAGACGCCGGTGGCGGACCGCGG  98

seq1  CCTGTCAGCACGTGTGA-GTGGACGCCCCTTCCCTCGT-GCGGCGCCCCG  145
       |||||||||||||||| ||||||| |||||||||||| |||||||||||
seq2  -CTGTCAGCACGTGTGAGGTGGACG-CCCTTCCCTCGTGGCGGCGCCCCG  146

seq1  GCCCGGCCCGGCCCCTCCGAACCCGTGCCCCGCA-CCCCCTGGTCTCGTC  194
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCCGGCCCGGCCCCTCCGAACCCGTGCCCCGCACCCCCCTGGTCTCGTC  196

seq1  CTGGTCGCCAGCTTCCTGCACCCGGGGGCGGTGCTCGGGCCCTGCGTCCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCGCCAGCTTCCTGCACCCGGGGGCGGTGCTCGGGCCCTGCGTCCC  246

seq1  TCGGCGTCCTCGCCAGGCCCGAGAGGAATCACAGAGAACGTGGAGCCTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCGTCCTCGCCAGGCCCGAGAGGAATCACAGAGAACGTGGAGCCTTT  296

seq1  TTTGTTTCCTAGCAATCCTTGTGGAGACCCGGGCGTTGGGTGCTCGGCCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCTAGCAATCCTTGTGGAGACCCGGGCGTTGGGTGCTCGGCCT  346

seq1  GGGCCCTGCAGAGGTGTGCGGGCCCGCCGGGCTACCTGCCGGGGGTGCCG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGCAGAGGTGTGCGGGCCCGCCGGGCTACCTGCCGGGGGTGCCG  396

seq1  CGCTTTTCTTGGCTTTCCTTGGCTTTGTAGCCCCTAGCCCTGTCGGTGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTTCTTGGCTTTCCTTGGCTTTGTAGCCCCTAGCCCTGTCGGTGTC  446

seq1  AGCAGCAGCGTCCCCGCCCCCCTTGCACGCCCGCTCAGCCCCATCCTTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCGTCCCCGCCCCCCTTGCACGCCCGCTCAGCCCCATCCTTGA  496

seq1  GCTAATTTAACAATTCAGTGATAAAACGGCCCAAGATGAGCTAGCTTCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTAACAATTCAGTGATAAAACGGCCCAAGATGAGCTAGCTTCCT  546

seq1  TCTCCCACCCCGAACCGGCAGGATTTCCGGGGCTCGAGATAGCTCCCTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACCCCGAACCGGCAGGATTTCCGGGGCTCGAGATAGCTCCCTTT  596

seq1  GTGCTCTCCTTATGTTTATTATTGCTGGGTGATGACAAGAATGGAGGCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTCCTTATGTTTATTATTGCTGGGTGATGACAAGAATGGAGGCAA  646

seq1  GATACCGTTCTGTTAGAGGAGGTGTTTCCTCCAGGGATGAGGTGGATGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCGTTCTGTTAGAGGAGGTGTTTCCTCCAGGGATGAGGTGGATGGA  696

seq1  GCACAAAGGCGCTGGCTGGGCTGGGCAAGGTGACTTGAGGTAGGTCTTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGGCGCTGGCTGGGCTGGGCAAGGTGACTTGAGGTAGGTCTTAG  746

seq1  TTGGCATAGAAAGAATTTCAGTCATTTTCAGGACAACCAGTGTCAGTGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATAGAAAGAATTTCAGTCATTTTCAGGACAACCAGTGTCAGTGGG  796

seq1  AGTTGGAGCCAGCCCTTGAGAACGTACACTAAGCATCTGACAAGCCCGAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGCCAGCCCTTGAGAACGTACACTAAGCATCTGACAAGCCCGAG  846

seq1  TGATGAGCAGAGCCCTCGAGGAACTTTTTCTTTAATGTGTGTGACAAGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGCAGAGCCCTCGAGGAACTTTTTCTTTAATGTGTGTGACAAGGT  896

seq1  CTCATGTAGCTCTGACTGGCTTCAACTCACAGTAATCCACCTGCCTCTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTAGCTCTGACTGGCTTCAACTCACAGTAATCCACCTGCCTCTGG  946

seq1  GATTGAACGAATAGGGGATAGGCTCCCCAGAGGGACTCTTTATAGCAAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAACGAATAGGGGATAGGCTCCCCAGAGGGACTCTTTATAGCAAAG  996

seq1  ATAACCAGTTCCTAGGCTCCATCCCGAAGTTAGAAATGAATTTTTGGCAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAGTTCCTAGGCTCCATCCCGAAGTTAGAAATGAATTTTTGGCAG  1046

seq1  GTGGGGCCTGAAAAAGTTCTGTGTTTTCAAATAGCTGAAAAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCCTGAAAAAGTTCTGTGTTTTCAAATAGCTGAAAAGAATTC  1093