BAC Information

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BAC

Clone NameB6Ng01-320G21
Chromosome18 (Build37)
Map Location 87,721,122 - 87,898,066
singlet/doubletdoublet
Overlap genenone
Upstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177, LOC665497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320G21.bB6Ng01-320G21.g
ACCGA109797GA109798
length1,0871,031
definitionB6Ng01-320G21.b B6Ng01-320G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,896,961 - 87,898,066)(87,721,122 - 87,722,096)
sequence
gaattcctattctcagtttggaaattcagttcccagatagcttgaaacat
atcaataaaagtccaagttctctttaaatgtcccaagtctactacctgca
tgttcttgtaaaaacgaaagtaaactacaaacattcttattccaagagac
aaaccaaatcaaccaaccaaataaacaaaagagcccaaataaaacaaaac
aatgaaaaaattaccatgatacagttataatcaatgtaaaaggctctatg
atcaagatcaagatcaaggtttcactcacaattttggaccaaaaaagtag
tcccgtctctctagctttgcctcacacagtatgcactctgtatggtgggc
ttcagcaaggtctttggtgttaatcacatagttttatcttctccagaatc
cagtggggatggtccagagtaactgaggatacatcttcaataatggcctc
tcatgcttttttagagactctattcatgcctcacagtgccaagccttagc
tactctataatccctcaactccaagattttcattgcaaaaaaaaaaaaaa
aatgttgaaggctacttccttagctatgcatcttctggtttttcttcaga
gatatttcaattctagtatcatgtcctttaagcacctagttggtcccttg
tgtccattcttctaaacagtttcatataaggtattttgctgttcctggag
tgccaaatgttctgattaatgacagactgtattttatctacatttctgat
tttcactcacacttgttcaaccatgacaacaacgaaaaaatattttcagt
cttcttattatttcatttatttaacttgttatttaattccttttgctagc
atgtgccctaagtctttattgtgctctcacatctttattgtgaatattca
gtgatttaactaaatgttctatgttccagaacagcacttgccagataaat
gatttttgtaaatttaaacaattaaattatatattattaaagtagatgaa
aggacattttgactcttttaaatcatctatttttatttaattttacactc
atatcatctgccacccaatcacctctgactgctcctc

gaattctgatgatgattggattgaatctgtagattgtattcaacaagata
gccattattactatattaatcctgctaatccatcttcttagatcttcaat
ttctttctttctttctttctttcctttcttccttccttccttctttcttt
tcttctttcctttcttccttccttccttcaatccttccttcctccctccc
ttccttcctccctaccttccttcctccctccctcccttcctccctccctt
gctctctctctctctctttctttcttactctttctttctctatttctttc
tttcgttctttcattcttatgttctttcttttattctttagttctttcgt
tctttcttctttctggggggtattcaacaattcagtggacttattgtttc
tggggtgtagggttcaggagctcttggtgcagtagatccatttcctcttc
accacgacaggcttctggcttcgaaggattctttcttaaaagacttgaag
tcccagtcatacagatcttctacttgtttagagtcataccaaggtgtttt
atattatttgtcactattgtgaggatgttgtttccctaatttctttctta
gcctgtgtatcctttgagaagaggaagacaactgatttgttcgagttaat
tttatatccagctagtttggtgaagttgtttatcaggttgagtaattctc
ttgtggaattttggggtcacttaattatatgattatataatctgatagta
taaatagtgatagtttaacttcttccttttcaatatgtatccctttgacc
tacatttgttgtctaattgctctgcctagaacttggagtacttcattgaa
taggtagtgagagaatggccagcctagtctagtccataattttaatatga
tatcttcaagtttctctccatttagtttgatgttgtctactggtttgctg
tacattgcttttagtatgttaggtatgggcccttgatttcctgatttttc
ccagacttttaacatgacgtatgctggattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87896961_87898066
seq2: B6Ng01-320G21.b_44_1130 (reverse)

seq1  GAGGAGCAGTCAGAGGGTGGATGGGTGGCAAGGAATGGAATATGGAGTGT  50
      |||||||||||||| ||||  |||||||||    |||  |||| ||||||
seq2  GAGGAGCAGTCAGA-GGTGATTGGGTGGCA---GATG--ATAT-GAGTGT  43

seq1  AAAAATTAAATTAAAAATAAGATGAATTTAAAAAGGAGTCAAAAATGTTC  100
       ||||||||| ||||||| ||||| ||||||||  ||||| |||||||  
seq2  -AAAATTAAA-TAAAAAT-AGATG-ATTTAAAA--GAGTC-AAAATGT--  84

seq1  CTTTTCATCTACTTTAATAATTATATAATTTAATTGTTTAAATTTACAAA  150
      | |||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  CCTTTCATCTACTTTAATAA-TATATAATTTAATTGTTTAAATTTAC-AA  132

seq1  AAATCATTTTATCTGGCAAGTGCTGTTCTGGAACATAGAACATTTAGTTA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCA-TTTATCTGGCAAGTGCTGTTCTGGAACATAGAACATTTAGTTA  181

seq1  AATCACTGAATATTCACAATAAAGATGTGAGAGCACAATAAAGACTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGAATATTCACAATAAAGATGTGAGAGCACAATAAAGACTTAGG  231

seq1  GCACATGCTAGCAAAAGGAATTAAATAACAAGTTAAATAAATGAAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCTAGCAAAAGGAATTAAATAACAAGTTAAATAAATGAAATAAT  281

seq1  AAGAAGACTGAAAATATTTTTTCGTTGTTGTCATGGTTGAACAAGTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACTGAAAATATTTTTTCGTTGTTGTCATGGTTGAACAAGTGTGA  331

seq1  GTGAAAATCAGAAATGTAGATAAAATACAGTCTGTCATTAATCAGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATCAGAAATGTAGATAAAATACAGTCTGTCATTAATCAGAACAT  381

seq1  TTGGCACTCCAGGAACAGCAAAATACCTTATATGAAACTGTTTAGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACTCCAGGAACAGCAAAATACCTTATATGAAACTGTTTAGAAGAA  431

seq1  TGGACACAAGGGACCAACTAGGTGCTTAAAGGACATGATACTAGAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACAAGGGACCAACTAGGTGCTTAAAGGACATGATACTAGAATTGA  481

seq1  AATATCTCTGAAGAAAAACCAGAAGATGCATAGCTAAGGAAGTAGCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCTGAAGAAAAACCAGAAGATGCATAGCTAAGGAAGTAGCCTTC  531

seq1  AACATTTTTTTTTTTTTTTTGCAATGAAAATCTTGGAGTTGAGGGATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTTTTTTTTTTTTGCAATGAAAATCTTGGAGTTGAGGGATTAT  581

seq1  AGAGTAGCTAAGGCTTGGCACTGTGAGGCATGAATAGAGTCTCTAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCTAAGGCTTGGCACTGTGAGGCATGAATAGAGTCTCTAAAAAA  631

seq1  GCATGAGAGGCCATTATTGAAGATGTATCCTCAGTTACTCTGGACCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGAGGCCATTATTGAAGATGTATCCTCAGTTACTCTGGACCATCC  681

seq1  CCACTGGATTCTGGAGAAGATAAAACTATGTGATTAACACCAAAGACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGATTCTGGAGAAGATAAAACTATGTGATTAACACCAAAGACCTT  731

seq1  GCTGAAGCCCACCATACAGAGTGCATACTGTGTGAGGCAAAGCTAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCCCACCATACAGAGTGCATACTGTGTGAGGCAAAGCTAGAGAG  781

seq1  ACGGGACTACTTTTTTGGTCCAAAATTGTGAGTGAAACCTTGATCTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGACTACTTTTTTGGTCCAAAATTGTGAGTGAAACCTTGATCTTGAT  831

seq1  CTTGATCATAGAGCCTTTTACATTGATTATAACTGTATCATGGTAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCATAGAGCCTTTTACATTGATTATAACTGTATCATGGTAATTTT  881

seq1  TTCATTGTTTTGTTTTATTTGGGCTCTTTTGTTTATTTGGTTGGTTGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTTTTGTTTTATTTGGGCTCTTTTGTTTATTTGGTTGGTTGATT  931

seq1  TGGTTTGTCTCTTGGAATAAGAATGTTTGTAGTTTACTTTCGTTTTTACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTCTCTTGGAATAAGAATGTTTGTAGTTTACTTTCGTTTTTACA  981

seq1  AGAACATGCAGGTAGTAGACTTGGGACATTTAAAGAGAACTTGGACTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGCAGGTAGTAGACTTGGGACATTTAAAGAGAACTTGGACTTTT  1031

seq1  ATTGATATGTTTCAAGCTATCTGGGAACTGAATTTCCAAACTGAGAATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATGTTTCAAGCTATCTGGGAACTGAATTTCCAAACTGAGAATAG  1081

seq1  GAATTC  1106
      ||||||
seq2  GAATTC  1087


seq1: chr18_87721122_87722096
seq2: B6Ng01-320G21.g_65_1038

seq1  GAATTCTGATGATGATTGGATTGAATCTGTAGATTGTATTCAACAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGATGATTGGATTGAATCTGTAGATTGTATTCAACAAGATA  50

seq1  GCCATTATTACTATATTAATCCTGCTAATCCATCTTCTTAGATCTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATTACTATATTAATCCTGCTAATCCATCTTCTTAGATCTTCAAT  100

seq1  TTCTTTCTTTCTTTCTTTCTTTCCTTTCTTCCTTCCTTCCTTCTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCCTTTCTTCCTTCCTTCCTTCTTTCTTT  150

seq1  TCTTCTTTCCTTTCTTCCTTCCTTCCTTCAATCCTTCCTTCCTCCCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCCTTTCTTCCTTCCTTCCTTCAATCCTTCCTTCCTCCCTCCC  200

seq1  TTCCTTCCTCCCTACCTTCCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTCCCTACCTTCCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTT  250

seq1  GCTCTCTCTCTCTCTCTTTCTTTCTTACTCTTTCTTTCTCTATTTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCTCTCTCTCTTTCTTTCTTACTCTTTCTTTCTCTATTTCTTTC  300

seq1  TTTCGTTCTTTCATTCTTATGTTCTTTCTTTTATTCTTTAGTTCTTTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTCTTTCATTCTTATGTTCTTTCTTTTATTCTTTAGTTCTTTCGT  350

seq1  TCTTTCTTCTTTCTGGGGGGTATTCAACAATTCAGTGGACTTATTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCTTTCTGGGGGGTATTCAACAATTCAGTGGACTTATTGTTTC  400

seq1  TGGGGTGTAGGGTTCAGGAGCTCTTGGTGCAGTAGATCCATTTCCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTAGGGTTCAGGAGCTCTTGGTGCAGTAGATCCATTTCCTCTTC  450

seq1  ACCACGACAGGCTTCTGGCTTCGAAGGATTCTTTCTTAAAAGACTTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGACAGGCTTCTGGCTTCGAAGGATTCTTTCTTAAAAGACTTGAAG  500

seq1  TCCCAGTCATACAGATCTTCTACTTGTTTAGAGTCATACCAAGGTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCATACAGATCTTCTACTTGTTTAGAGTCATACCAAGGTGTTTT  550

seq1  ATATTATTTGTCACTATTGTGAGGATGTTGTTTCCCTAATTTCTTTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTGTCACTATTGTGAGGATGTTGTTTCCCTAATTTCTTTCTTA  600

seq1  GCCTGTGTATCCTTTGAGAAGAGGAAGACAACTGATTTGTTCGAGTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTATCCTTTGAGAAGAGGAAGACAACTGATTTGTTCGAGTTAAT  650

seq1  TTTATATCCAGCTAGTTTGGTGAAGTTGTTTATCAGGTTGAGTAATTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCCAGCTAGTTTGGTGAAGTTGTTTATCAGGTTGAGTAATTCTC  700

seq1  TTGTGGAATTTTGGGGTCACTTAATTATATGATTATATAATCTGATAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAATTTTGGGGTCACTTAATTATATGATTATATAATCTGATAGTA  750

seq1  TAAATAGTGATAGTTTAACTTCTTCCTTTTCAATATGTATCCCTTTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTGATAGTTTAACTTCTTCCTTTTCAATATGTATCCCTTTGACC  800

seq1  TACATTTGTTGTCTAATTGCTCTGCCTAGAACTTGGAGTACTTCATTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGTTGTCTAATTGCTCTGCCTAGAACTTGGAGTACTTCATTGAA  850

seq1  TAGGTAGTGAGAGAATGGCCAGCCTAGTCTAGTCCATAATTTTAATATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGTGAGAGAATGGCCAGCCTAGTCTAGTCCATAATTTTAATATGA  900

seq1  TATCTTCAAGTTTCTCTCCATTTAGTTTGATGTTGTCTACTGGTTTGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAAGTTTCTCTCCATTTAGTTTGATGTTGTCTACTGGTTTGCTG  950

seq1  TACATTGCTTTTAGTATGTTTAGGT  975
      |||||||||||||||||| ||||||
seq2  TACATTGCTTTTAGTATG-TTAGGT  974


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