BAC Information

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BAC

Clone NameB6Ng01-320G22
Chromosome18 (Build37)
Map Location 18,195,142 - 18,353,612
singlet/doubletdoublet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320G22.bB6Ng01-320G22.g
ACCGA109799GA109800
length1,1581,141
definitionB6Ng01-320G22.b B6Ng01-320G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,195,142 - 18,196,307)(18,352,472 - 18,353,612)
sequence
gaattctgggcatctgagaaaaaattctacttgcatatagattaaaataa
aaataaatgctgtattatatttctttctcccttaagttggacatttttgt
cacctctaaagctcatggttttcaaactaatattcaagagatgttatata
aattcttggtacattatgatgatattagggtaaaatcatcatgaatggaa
ttagtccccttattaaagattcccagagggtattcttgggaacatctgag
gatacaaagaaaaagatattatgaagcatgaatttagtctccatcagacc
ttagttaatagcgcatcttttggcttccttaccttcagagctatgagaaa
tgttcatttgttgtttataattcatataaattatgacatcctggactgga
ccacatcaactttaactgtgctatgttatttttcgtgtttgtgtcctttc
tcccttagtgtaagtcttaaacaaatatagcaaactcctccacccctaaa
agccacattcctgtaatcatatcactctttgttttttttaactacctttg
tagtcaataatttaagtgtgaaatatacagataaaatgcatgctccttat
atcaaatcatgtagaaaaaagaaaagagtagaatgtaaggttagtttatt
atatacaaatagaatagtgagccagaagttgtgctgaaagtcgagaaatg
cttgtgaagcagcatactgttaactcacaaagactattaacttcttacca
cacactgattgatagtgtagatatttaaacaatttcgcttaaatagtctc
tgggcagaacatactgtgctaaaatctattctctgcataacagttgtatt
ctgtgatattcatagagatccatggcgtagagcttctcatgaaaggtgca
tagttaaatacattttatttttgtctgggcaatactgcacaaaacatctg
tcttttttttctatattttattctttgaattttgaattcaaatagatttt
aaatgcatagacagcaaatattcttcacttgcaaagggtggtttgtcagg
cttaatgctcaaactttaccagaacatgacaagcactggatctgggattt
tttttattcctgttaaccagagggtactttgaaaaattccctttatggaa
gggttatg

gaattctggggataatttgaaaaaaaagttacaagactaaaatgcttctg
aatattttgatgtcaatacccaaattaactagacttttatcatttggtaa
ttattcttaatagcttttttaaaaccttaagctgattcaaagagcctcag
taataaatattttttacagtatgataaccattgaaaaactgaaccattta
aatctcttgaactcaaagtcagaagtatcaaacccatgaaagaagataca
agtatgcatataatttccacattttcaatttcaaactcaattgaaaccat
ctgtgatctcacattcagttttagtattcatgtttactcttgatagctag
tcaaccaatgaaagggaatcactttggaaaatagttgtttgtgcatttca
atccttgaatattttaatgcatcgaaagtcagtttttgaatcttcatgaa
cttagagagtgagtttatagattttgcttctttgagtttactcagaaaac
cagatacataatcttatctccacaaattcaaatgctaaggatgcattcag
ttctaacagatgagatttaaaatttttcatccaaataactcttttaccca
tttagtgcataagacttctgtgtccagtgggcattttactggatggaatc
ctttctagagagacctaacacagtaatgcagagaggaggggaagaaaatg
tactgatgttaagaaatatggacatggcagtatttagaaccgagaaaagg
aaagcagccaagaataaagcagagtgaccaccaatgatttgtgtcagtgt
ttggttggtggttgtagttgctcttgttcttttgaaaaccaacttaaact
tcaatgaggccatctcatttctaccttagagcttaaactgctttggcata
taggagcccctacattttaaagtgtattctttaagtttaaatttcttgaa
atgggggagtccttttcattgagtcatcagattttgggatatcctggtat
tatagacacatttttaatactctacacaggactctattattcatttaaca
gcttatcaaattgtagatatgctgtagaatacaaataaagctcttagaga
atgaatatatgaataccctgtaacatggatcaggttcttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18195142_18196307
seq2: B6Ng01-320G22.b_44_1201

seq1  GAATTCTGGGCATCTGAGAAAAAATTCTACTTGCATATAGATTAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCATCTGAGAAAAAATTCTACTTGCATATAGATTAAAATAA  50

seq1  AAATAAATGCTGTATTATATTTCTTTCTCCCTTAAGTTGGACATTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGCTGTATTATATTTCTTTCTCCCTTAAGTTGGACATTTTTGT  100

seq1  CACCTCTAAAGCTCATGGTTTTCAAACTAATATTCAAGAGATGTTATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTAAAGCTCATGGTTTTCAAACTAATATTCAAGAGATGTTATATA  150

seq1  AATTCTTGGTACATTATGATGATATTAGGGTAAAATCATCATGAATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGGTACATTATGATGATATTAGGGTAAAATCATCATGAATGGAA  200

seq1  TTAGTCCCCTTATTAAAGATTCCCAGAGGGTATTCTTGGGAACATCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCCCTTATTAAAGATTCCCAGAGGGTATTCTTGGGAACATCTGAG  250

seq1  GATACAAAGAAAAAGATATTATGAAGCATGAATTTAGTCTCCATCAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAAGAAAAAGATATTATGAAGCATGAATTTAGTCTCCATCAGACC  300

seq1  TTAGTTAATAGCGCATCTTTTGGCTTCCTTACCTTCAGAGCTATGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAATAGCGCATCTTTTGGCTTCCTTACCTTCAGAGCTATGAGAAA  350

seq1  TGTTCATTTGTTGTTTATAATTCATATAAATTATGACATCCTGGACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTGTTGTTTATAATTCATATAAATTATGACATCCTGGACTGGA  400

seq1  CCACATCAACTTTAACTGTGCTATGTTATTTTTCGTGTTTGTGTCCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCAACTTTAACTGTGCTATGTTATTTTTCGTGTTTGTGTCCTTTC  450

seq1  TCCCTTAGTGTAAGTCTTAAACAAATATAGCAAACTCCTCCACCCCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAGTGTAAGTCTTAAACAAATATAGCAAACTCCTCCACCCCTAAA  500

seq1  AGCCACATTCCTGTAATCATATCACTCTTTGTTTTTTTTAACTACCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATTCCTGTAATCATATCACTCTTTGTTTTTTTTAACTACCTTTG  550

seq1  TAGTCAATAATTTAAGTGTGAAATATACAGATAAAATGCATGCTCCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATAATTTAAGTGTGAAATATACAGATAAAATGCATGCTCCTTAT  600

seq1  ATCAAATCATGTAGAAAAAAGAAAAGAGTAGAATGTAAGGTTAGTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCATGTAGAAAAAAGAAAAGAGTAGAATGTAAGGTTAGTTTATT  650

seq1  ATATACAAATAGAATAGTGAGCCAGAAGTTGTGCTGAAAGTCGAGAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAATAGAATAGTGAGCCAGAAGTTGTGCTGAAAGTCGAGAAATG  700

seq1  CTTGTGAAGCAGCATACTGTTAACTCACAAAGACTATTAACTTCTTACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAAGCAGCATACTGTTAACTCACAAAGACTATTAACTTCTTACCA  750

seq1  CACACTGATTGATAGTGTAGATATTTAAACAATTTCGCTTAAATAGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGATTGATAGTGTAGATATTTAAACAATTTCGCTTAAATAGTCTC  800

seq1  TGGGCAGAACATACTGTGCTAAAATCTATTCTCTGCATAACAGTTGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGAACATACTGTGCTAAAATCTATTCTCTGCATAACAGTTGTATT  850

seq1  CTGTGATATTCATAGAGATCCATGGCGTAGAGCTTCTCATGAAAGGTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATATTCATAGAGATCCATGGCGTAGAGCTTCTCATGAAAGGTGCA  900

seq1  TAGTTAAATACATTTTATTTTTGTCTGGGCAATACTGCACAAAACATCTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGTTAAATACATTTTATTTTTGTCTGGGCAATACTGCACAAAACATC-T  949

seq1  GTCTTTTTTTTCTTATATTTTATTCTTTGAATTTTGAATTCAAATAGATT  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTTTTC-TATATTTTATTCTTTGAATTTTGAATTCAAATAGATT  998

seq1  TTAAATGCAATAGACAGCAAATAATTCTTCACTTGCAAAGGGGTGGTTTG  1050
      |||||||| ||||||||||||| |||||||||||||||| ||||||||||
seq2  TTAAATGC-ATAGACAGCAAAT-ATTCTTCACTTGCAAA-GGGTGGTTTG  1045

seq1  TCAGGGCTTAAATGCTCAAAAACCTTACCAG-ACATGACAAGCAACTGGA  1099
      ||| ||||| |||||||  |||| ||||||| ||||||||||| ||||||
seq2  TCA-GGCTT-AATGCTC--AAACTTTACCAGAACATGACAAGC-ACTGGA  1090

seq1  TTCTGGATTTTTTT--ATCCTGTAACCAAGAGGGTACTTTAAAAAATTCC  1147
      |   ||||||||||   |||||| | | |||||||||||| |||||||||
seq2  TCTGGGATTTTTTTTATTCCTGTTAACCAGAGGGTACTTTGAAAAATTCC  1140

seq1  CACTTATGAAGGTGTTATG  1166
      |  ||||| | | ||||||
seq2  C-TTTATGGAAGGGTTATG  1158


seq1: chr18_18352472_18353612
seq2: B6Ng01-320G22.g_65_1205 (reverse)

seq1  ACAAGAAACTGACTCATGTTACA-GGTA-TCATATA-TCA-TCTCTAAGA  46
      ||||||| ||||  ||||||||| |||| ||||||| ||| |||||||||
seq2  ACAAGAACCTGATCCATGTTACAGGGTATTCATATATTCATTCTCTAAGA  50

seq1  GCTTTTATTTGTATTCTTAACAGCATATTCTACAATTTGAT-AGCTGTTA  95
      || ||||||||||||||  |||||||| ||||||||||||| ||||||||
seq2  GC-TTTATTTGTATTCT--ACAGCATA-TCTACAATTTGATAAGCTGTTA  96

seq1  AATGAATAATAGAGT-CTGTGTAGAGTTATTAAAAATGTTGTCTAT-ATA  143
      ||||||||||||||| |||||||||| ||||||||||| ||||||| |||
seq2  AATGAATAATAGAGTCCTGTGTAGAG-TATTAAAAATG-TGTCTATAATA  144

seq1  CCAGGATAT-CCAAAATCTGATGACTCAATGAAAAGGACT-CCCCATTTC  191
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  CCAGGATATCCCAAAATCTGATGACTCAATGAAAAGGACTCCCCCATTTC  194

seq1  AAGAAATTTTAAACCTTAAAGAATACACCTTAAAATGTAGGGGCTCCTAT  241
      |||||||||  || |||||||||||||| |||||||||||||||||||||
seq2  AAGAAATTT--AAACTTAAAGAATACACTTTAAAATGTAGGGGCTCCTAT  242

seq1  ATGCCAAAGCAGTTTAAGCTCTAAGGTAGAAATGAGATGGCCTCATTGAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAGCAGTTTAAGCTCTAAGGTAGAAATGAGATGGCCTCATTGAA  292

seq1  GTTTAAGTTGGTTTTCAAAAGAACAAGAGCAACTACAACCACCAACCAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGTTGGTTTTCAAAAGAACAAGAGCAACTACAACCACCAACCAAA  342

seq1  CACCTGACACAAATCATTGGTGGTCACTCTGCTTTATTCTTGGCTGCTTT  391
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CTGACACAAATCATTGGTGGTCACTCTGCTTTATTCTTGGCTGCTTT  391

seq1  CCTTTTCTCGGTTCTAAATACTGCCATGTCCATATTTCTTAACATCAGTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTCGGTTCTAAATACTGCCATGTCCATATTTCTTAACATCAGTA  441

seq1  CATTTTCTTCCCCTCCTCTCTGCATTACTGTGTTAGGTCTCTCTAGAAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTCCCCTCCTCTCTGCATTACTGTGTTAGGTCTCTCTAGAAAG  491

seq1  GATTCCATCCAGTAAAATGCCCACTGGACACAGAAGTCTTATGCACTAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCATCCAGTAAAATGCCCACTGGACACAGAAGTCTTATGCACTAAA  541

seq1  TGGGTAAAAGAGTTATTTGGATGAAAAATTTTAAATCTCATCTGTTAGAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAAGAGTTATTTGGATGAAAAATTTTAAATCTCATCTGTTAGAA  591

seq1  CTGAATGCATCCTTAGCATTTGAATTTGTGGAGATAAGATTATGTATCTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCATCCTTAGCATTTGAATTTGTGGAGATAAGATTATGTATCTG  641

seq1  GTTTTCTGAGTAAACTCAAAGAAGCAAAATCTATAAACTCACTCTCTAAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGAGTAAACTCAAAGAAGCAAAATCTATAAACTCACTCTCTAAG  691

seq1  TTCATGAAGATTCAAAAACTGACTTTCGATGCATTAAAATATTCAAGGAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAGATTCAAAAACTGACTTTCGATGCATTAAAATATTCAAGGAT  741

seq1  TGAAATGCACAAACAACTATTTTCCAAAGTGATTCCCTTTCATTGGTTGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCACAAACAACTATTTTCCAAAGTGATTCCCTTTCATTGGTTGA  791

seq1  CTAGCTATCAAGAGTAAACATGAATACTAAAACTGAATGTGAGATCACAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATCAAGAGTAAACATGAATACTAAAACTGAATGTGAGATCACAG  841

seq1  ATGGTTTCAATTGAGTTTGAAATTGAAAATGTGGAAATTATATGCATACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCAATTGAGTTTGAAATTGAAAATGTGGAAATTATATGCATACT  891

seq1  TGTATCTTCTTTCATGGGTTTGATACTTCTGACTTTGAGTTCAAGAGATT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTCTTTCATGGGTTTGATACTTCTGACTTTGAGTTCAAGAGATT  941

seq1  TAAATGGTTCAGTTTTTCAATGGTTATCATACTGTAAAAAATATTTATTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTTCAGTTTTTCAATGGTTATCATACTGTAAAAAATATTTATTA  991

seq1  CTGAGGCTCTTTGAATCAGCTTAAGGTTTTAAAAAAGCTATTAAGAATAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTCTTTGAATCAGCTTAAGGTTTTAAAAAAGCTATTAAGAATAA  1041

seq1  TTACCAAATGATAAAAGTCTAGTTAATTTGGGTATTGACATCAAAATATT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAATGATAAAAGTCTAGTTAATTTGGGTATTGACATCAAAATATT  1091

seq1  CAGAAGCATTTTAGTCTTGTAACTTTTTTTTCAAATTATCCCCAGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCATTTTAGTCTTGTAACTTTTTTTTCAAATTATCCCCAGAATTC  1141


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