BAC Information

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BAC

Clone NameB6Ng01-320K05
Chromosome18 (Build37)
Map Location 34,055,045 - 34,176,988
singlet/doubletdoublet
Overlap geneEpb4.1l4a
Upstream geneCamk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258
Downstream geneEG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320K05.bB6Ng01-320K05.g
ACCGA109957GA109958
length1,1991,158
definitionB6Ng01-320K05.b B6Ng01-320K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,055,045 - 34,056,250)(34,175,850 - 34,176,988)
sequence
gaattccaggtctccttaactccaccacacaccctggggttatgggcaag
cctcaccctgcccagcacctacgtaagtgtaagtgccgggaaacccaact
cagggccttaggtttgcacgacagacacatcagcaaatgaactagctccc
taaccctccccgactgctgttagagcaagggaacctggttttaggtgaca
atatactcctttgccaaggagcagcgtattacgtttggtgctgcccaata
gccatgacattagtattcagtgtaacagcactgagagtgtgacctttgag
agatgattcgtccatgagctgccaccctcctgaatgagcgaatgctgctt
tctggggatggattacttatgggagcggggttggtctgaagcatggcttc
tcttcctgctgggcttctttctcctgattacccattatgatgccccacaa
ggtcttgcctggtgcacctgtctcatcatggacatccagcccctagaatc
atatatccaactaaatctatctggtaatgcaccagtctcaagtactctgt
cacagcaacaaaaatcaggctgacagatatgttttagaaagaaaaaaaga
cggggcttattctagtcctttctcccacacagagtgagagtaaagagata
cacagagattccaggatcattctacatgacgctgaccaccagggtgtggc
gtttctggactggacctgggtgtgatgccatcttgtctatccagatggtc
ccaaggagaaacagcctgtattcgataagagcatctctgcccagtgtcac
ttttcccctcctagttctccactattttaaaccctctctttagtgtgtgt
acagatttttttttcccacaaactggactagatcctattctatacaaaga
tagcagtaaatcaaagcccacttttcagtttcatccccgtttcaagcagc
cctgcttgttagcatcagccccaacacccagttacccagcaagcatgacc
actgtcctccccactcttcttttctccaggatagaaaggcagcaggcagg
tatccttccacttcagctgtcatctaataacagcactgggtgtaccagga
gaaactgacagaagcttctgtcctctgaacgtcttggcctaaacaccatg
ggcttcttatgctctgcctgatataatccaagttcatcaattttctagg
gaattcacagcacttgtgacagtacgtacaaaactgttcaagctcaggac
aaaccaaatgccagtgtggagttgggagtgggtacaaagcccctcatata
tctgagggtctgtggtaactgataggtgctggcaggggagagctaagtct
tcaagtttcaggaccctgataggtgtaacatgctctagtggatgcttaca
tgcccaagagcctgtaggcactactgacaggactctgatctaaaagtaga
atgagaacacaaggtcggttgcttatagaatgggggatgggtctgggagg
agacgggacatgaaaatgcaatgtgtgaaaggctcaaataatgaatgaaa
aaatgttttaaaaactgtgattttctatgctatgccacatgctgtcttag
gagctaccgtgaacaagcggagtaggggctgcctctgccctcaggaggct
cacagaaagcgaaaagacacacacagaatatactcaggaactcacaagtt
tacagttaggaaacggtctacttaaataaaaaaaaagtcacgtggtgttt
tctaggaccctgatcccacattatgacagtgttctagttaaagtaagatt
cacacttgctaagaactatcactctacggaactgtgggtggtatgagggc
aaaaagcagtctgccattgctatgcctgcctgtcacgcagagaatggcca
atgagtcttgtctgagtagttagagaaaaagagcaaagaaaatgtgagca
gagaaaagcctaagtagcagtttaagatgtatgattcacataatgtagag
ccttgatatacagatgtacatatttgagaaagatataaaacatagggtgg
ttattttccatgaacatgtggtattttatttttggactatgatttatcaa
atgaccttgtgaattaaaaccccgggtttgtgcacttgacatttgttggg
ttatctctgcctgaattctcaagcttagtctcccctagtcattcccttct
gggttcaatatgtggaggtccatgtggacccagacaccgctaaattatcc
tattagcctcagaggccattgcttaaatctaggcttaacttggtcagcac
agtccaccatatagtccacagagaattacttcagtgtagagttcatcgtc
aatcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34055045_34056250
seq2: B6Ng01-320K05.b_47_1245

seq1  GAATTCCAGGTCTCCTTAACTCCACCACACACCCTGGGGTTATGGGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCTCCTTAACTCCACCACACACCCTGGGGTTATGGGCAAG  50

seq1  CCTCACCCTGCCCAGCACCTACGTAAGTGTAAGTGCCGGGAAACCCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCTGCCCAGCACCTACGTAAGTGTAAGTGCCGGGAAACCCAACT  100

seq1  CAGGGCCTTAGGTTTGCACGACAGACACATCAGCAAATGAACTAGCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTTAGGTTTGCACGACAGACACATCAGCAAATGAACTAGCTCCC  150

seq1  TAACCCTCCCCGACTGCTGTTAGAGCAAGGGAACCTGGTTTTAGGTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTCCCCGACTGCTGTTAGAGCAAGGGAACCTGGTTTTAGGTGACA  200

seq1  ATATACTCCTTTGCCAAGGAGCAGCGTATTACGTTTGGTGCTGCCCAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTCCTTTGCCAAGGAGCAGCGTATTACGTTTGGTGCTGCCCAATA  250

seq1  GCCATGACATTAGTATTCAGTGTAACAGCACTGAGAGTGTGACCTTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGACATTAGTATTCAGTGTAACAGCACTGAGAGTGTGACCTTTGAG  300

seq1  AGATGATTCGTCCATGAGCTGCCACCCTCCTGAATGAGCGAATGCTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTCGTCCATGAGCTGCCACCCTCCTGAATGAGCGAATGCTGCTT  350

seq1  TCTGGGGATGGATTACTTATGGGAGCGGGGTTGGTCTGAAGCATGGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGATGGATTACTTATGGGAGCGGGGTTGGTCTGAAGCATGGCTTC  400

seq1  TCTTCCTGCTGGGCTTCTTTCTCCTGATTACCCATTATGATGCCCCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGCTGGGCTTCTTTCTCCTGATTACCCATTATGATGCCCCACAA  450

seq1  GGTCTTGCCTGGTGCACCTGTCTCATCATGGACATCCAGCCCCTAGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGCCTGGTGCACCTGTCTCATCATGGACATCCAGCCCCTAGAATC  500

seq1  ATATATCCAACTAAATCTATCTGGTAATGCACCAGTCTCAAGTACTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCAACTAAATCTATCTGGTAATGCACCAGTCTCAAGTACTCTGT  550

seq1  CACAGCAACAAAAATCAGGCTGACAGATATGTTTTAGAAAGAAAAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAACAAAAATCAGGCTGACAGATATGTTTTAGAAAGAAAAAAAGA  600

seq1  CGGGGCTTATTCTAGTCCTTTCTCCCACACAGAGTGAGAGTAAAGAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTTATTCTAGTCCTTTCTCCCACACAGAGTGAGAGTAAAGAGATA  650

seq1  CACAGAGATTCCAGGATCATTCTACATGACGCTGACCACCAGGGTGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATTCCAGGATCATTCTACATGACGCTGACCACCAGGGTGTGGC  700

seq1  GTTTCTGGACTGGACCTGGGTGTGATGCCATCTTGTCTATCCAGATGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGACTGGACCTGGGTGTGATGCCATCTTGTCTATCCAGATGGTC  750

seq1  CCAAGGAGAAACAGCCTGTATTCGATAAGAGCATCTCTGCCCAGTGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGAAACAGCCTGTATTCGATAAGAGCATCTCTGCCCAGTGTCAC  800

seq1  TTTTCCCCTCCTAGTTCTCCACTATTTTAAACCCTCTCTTTAGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCTCCTAGTTCTCCACTATTTTAAACCCTCTCTTTAGTGTGTGT  850

seq1  ACAGA-TTTTTTTTCCCACAAACTGGACTAGATCCTATTCTATACAAAGA  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTTTTTTTCCCACAAACTGGACTAGATCCTATTCTATACAAAGA  900

seq1  TAGCAGTAAATCAAAGCCCACTTTTCAGTTTCATCCCCGTTTCAAGCAG-  948
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGCAGTAAATCAAAGCCCACTTTTCAGTTTCATCCCCGTTTCAAGCAGC  950

seq1  CCTGCTTGTTAGCATCAGCCCCAAACACCCAGTTACCCAGCAAGCATGAC  998
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTGCTTGTTAGCATCAGCCCC-AACACCCAGTTACCCAGCAAGCATGAC  999

seq1  CACTGTCCTCCCCACTCT--CTTTCTCCAGGATAGAAAGGCAAGCAGCAA  1046
      ||||||||||||||||||   |||||||||||||||||||| |||||  |
seq2  CACTGTCCTCCCCACTCTTCTTTTCTCCAGGATAGAAAGGC-AGCAGGCA  1048

seq1  GGTATCCTTCCACTTCAGCCTGTCAATCTTAATAACAGCACT-GGTGTAA  1095
      |||||||||||||||||| ||||| ||| ||||||||||||| ||||| |
seq2  GGTATCCTTCCACTTCAG-CTGTC-ATC-TAATAACAGCACTGGGTGT-A  1094

seq1  CCAGGAGAAAACTGACAGAGCCTTCCTTGT-CTCTGACAGTCTTGG-CTA  1143
      ||||||| |||||||||||  ||||  ||| ||||||  ||||||| |||
seq2  CCAGGAG-AAACTGACAGAAGCTTC--TGTCCTCTGAACGTCTTGGCCTA  1141

seq1  AACACCATGGGCTTCTTATATGCTCCTTGGCTGATAATATCACAATTCAT  1193
      ||||||||||||||||  |||||||  || ||||||  |||  | |||||
seq2  AACACCATGGGCTTCT--TATGCTC--TGCCTGATATAATCCAAGTTCAT  1187

seq1  CAATTTTCCTAGG  1206
      ||||||| |||||
seq2  CAATTTT-CTAGG  1199

seq1: chr18_34175850_34176988
seq2: B6Ng01-320K05.g_69_1226 (reverse)

seq1  TGATGA-TGACGATGACTCCTAACACTGAAGTAA-TCTCTGTGG---CTA  45
      |||||| |||||||||   || |||||||||||| |||||||||    ||
seq2  TGATGATTGACGATGAACTCT-ACACTGAAGTAATTCTCTGTGGACTATA  49

seq1  TGGTGGGCTGTGCTGACC-AGTTTAGCCTAGA-TTAAACCATGCCTCCTG  93
      |||||| ||||||||||| |||| |||||||| |||| | ||| |  |||
seq2  TGGTGGACTGTGCTGACCAAGTTAAGCCTAGATTTAAGCAATGGCCTCTG  99

seq1  A-GCT-ATAGGA-ATATTAGC-GTGTCTGGGTCCACATGGGACCT-CACA  138
      | ||| |||||| |  ||||| |||||||||||||||| |||||| ||||
seq2  AGGCTAATAGGATAATTTAGCGGTGTCTGGGTCCACAT-GGACCTCCACA  148

seq1  TA-TGAA-CCAGAA-GGAATGACTA-GGGAGACTAAGCTTGAGAA-TCAG  183
      || |||| |||||| |||||||||| ||||||||||||||||||| ||||
seq2  TATTGAACCCAGAAGGGAATGACTAGGGGAGACTAAGCTTGAGAATTCAG  198

seq1  GCAGAGATAA-CCAACAAATGTCAAGTGCACAAA-CCGGGGTTTTAATTC  231
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  GCAGAGATAACCCAACAAATGTCAAGTGCACAAACCCGGGGTTTTAATTC  248

seq1  ACAAGGTCATTTGATAAATCATAGTCCAAAA--TAAATACCACATGTTCA  279
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  ACAAGGTCATTTGATAAATCATAGTCCAAAAATAAAATACCACATGTTCA  298

seq1  TGGAAAATAACCACCCTATGTTTTATATCTTTCTCAAATATGTACATCTG  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATAACCACCCTATGTTTTATATCTTTCTCAAATATGTACATCTG  348

seq1  TATATCAAGGCTCTACATTATGTGAATCATACATCTTAAACTGCTACTTA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAGGCTCTACATTATGTGAATCATACATCTTAAACTGCTACTTA  398

seq1  GGCTTTTCTCTGCTCACATTTTCTTTGCTCTTTTTCTCTAACTACTCAGA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCTCTGCTCACATTTTCTTTGCTCTTTTTCTCTAACTACTCAGA  448

seq1  CAAGACTCATTGGCCATTCTCTGCGTGACAGGCAGGCATAGCAATGGCAG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTCATTGGCCATTCTCTGCGTGACAGGCAGGCATAGCAATGGCAG  498

seq1  ACTGCTTTTTGCCCTCATACCACCCACAGTTCCGTAGAGTGATAGTTCTT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTTTGCCCTCATACCACCCACAGTTCCGTAGAGTGATAGTTCTT  548

seq1  AGCAAGTGTGAATCTTACTTTAACTAGAACACTGTCATAATGTGGGATCA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGTGAATCTTACTTTAACTAGAACACTGTCATAATGTGGGATCA  598

seq1  GGGTCCTAGAAAACACCACGTGACTTTTTTTTTATTTAAGTAGACCGTTT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTAGAAAACACCACGTGACTTTTTTTTTATTTAAGTAGACCGTTT  648

seq1  CCTAACTGTAAACTTGTGAGTTCCTGAGTATATTCTGTGTGTGTCTTTTC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTGTAAACTTGTGAGTTCCTGAGTATATTCTGTGTGTGTCTTTTC  698

seq1  GCTTTCTGTGAGCCTCCTGAGGGCAGAGGCAGCCCCTACTCCGCTTGTTC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGTGAGCCTCCTGAGGGCAGAGGCAGCCCCTACTCCGCTTGTTC  748

seq1  ACGGTAGCTCCTAAGACAGCATGTGGCATAGCATAGAAAATCACAGTTTT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAGCTCCTAAGACAGCATGTGGCATAGCATAGAAAATCACAGTTTT  798

seq1  TAAAACATTTTTTCATTCATTATTTGAGCCTTTCACACATTGCATTTTCA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTTTTTCATTCATTATTTGAGCCTTTCACACATTGCATTTTCA  848

seq1  TGTCCCGTCTCCTCCCAGACCCATCCCCCATTCTATAAGCAACCGACCTT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCGTCTCCTCCCAGACCCATCCCCCATTCTATAAGCAACCGACCTT  898

seq1  GTGTTCTCATTCTACTTTTAGATCAGAGTCCTGTCAGTAGTGCCTACAGG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCATTCTACTTTTAGATCAGAGTCCTGTCAGTAGTGCCTACAGG  948

seq1  CTCTTGGGCATGTAAGCATCCACTAGAGCATGTTACACCTATCAGGGTCC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGCATGTAAGCATCCACTAGAGCATGTTACACCTATCAGGGTCC  998

seq1  TGAAACTTGAAGACTTAGCTCTCCCCTGCCAGCACCTATCAGTTACCACA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTGAAGACTTAGCTCTCCCCTGCCAGCACCTATCAGTTACCACA  1048

seq1  GACCCTCAGATATATGAGGGGCTTTGTACCCACTCCCAACTCCACACTGG  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCAGATATATGAGGGGCTTTGTACCCACTCCCAACTCCACACTGG  1098

seq1  CATTTGGTTTGTCCTGAGCTTGAACAGTTTTGTACGTACTGTCACAAGTG  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGTTTGTCCTGAGCTTGAACAGTTTTGTACGTACTGTCACAAGTG  1148

seq1  CTGTGAATTC  1139
      ||||||||||
seq2  CTGTGAATTC  1158