BAC Information

Click to search

BAC

Clone NameB6Ng01-321E24
Chromosome18 (Build37)
Map Location 69,883,881 - 70,001,335
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043380, EG225681, Tcf4
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321E24.bB6Ng01-321E24.g
ACCGA110454GA110455
length9371,017
definitionB6Ng01-321E24.b B6Ng01-321E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,000,397 - 70,001,335)(69,883,881 - 69,884,851)
sequence
gaattccttctattaacatgtgaatattttctcctcagtggaaacgggga
ataggccgagctgtctcaaggtataaggaggttttaggtcactgccactg
gctgcttttgttcgtgttttttcactacaaaaaatttccaccacttatgg
ctaactgcttcggattgtgtacccagctttgtttgctgtccctggagccg
ccatcttaaaggaaacgatttgccatccctcacgttcccaggatgacagg
tatctgcaaggctcagctggaaaaataactgaaatcgttatttgggcaaa
tagatgtgaagaacatattttcaaactaattctgctgataatgaaatata
tgtccactattctcaatagaaaatgttgaaggaaaaggatccctttctta
taacatcactaattcaaaactgcaatggtttatcttgacttgtggtctca
ttgggttgcagaccatcttaatggggaagtcaccacatatttcgtggcgg
agggagcctgtgacataaaatgtacacattagaggctgaccagcaaatag
taaaggtagttcagaactagaagcaagtaataaccttcgaaggtgtaccg
ctggtgacctgcttctacacgccagtccccagatctcaagtttctggaaa
ttctccaaagagttctagtagatgagctcctagtgttcgaacatagtgtg
aacctgagtggaatatttcaagttcaaactgtaacataaagtctaattgg
aactcggctgtcttcatactcttacaagtgactacatttgcaccacgatg
acaggagcagcagtcacagccgaaaatgcagtgcttaaaattgaagataa
gacatgaccctttacagaagaaaagtgctcatactccttcttgataatgt
aaagttatgtgtgtgcttgtgtgtgtgtgagtgtgtg
gaattcatgccgatatgtttgaggctcgaggaaaaatcgcgaaagggatt
tcctctgagggcggacctttgacacgtacctcttgccatcttgaacactt
cggggcaatggttggggaaagctggctgatagacattcattttgacaaga
cagaattatttttaaaatgtactttctgaccacttgatgtatagatagga
atcttgggttgttccttaaggggtctgcaggtgagcgaccaataatgaaa
taaatgtgcgtctaggaaacttactgcttcttcatggactcgcaggatga
atagctcaaagttaggctaaatttcctccgggtccctcagcaggaagatc
aagggctcagggctgatgccaggaaaccagaggttagggagctcgctcct
tttcatatggattttatccagagggaagacgtgagggcaaaataccatgt
acccggaactgttccacttcagactgggcacatccataaaagctatttct
tcagagcaggctggtgctgtctcgggttttcagttggagaaatcctattc
cttcttggtctatttgctgggagaggctgtaaattcgcaggagcagatgg
caccttctcagatacacagctctacagacccagagagcacagaacagcct
tcagcaggtgaggcagctcaaagctaagctctgttaaaggagcagtgtga
aaggagagccttgttcacttcttcaaatcaatggctctgtcttaatatgg
atccagagaaaggagttaggctacaacttgctactaggagaaaggaagaa
ataaaatgcgtgaaaacttattatttcccccttcccataagaatctttta
ttctcacatgtagaatgtatctttggcctactagcgattacatgaatgtc
atggctaaatacaggcacagctattggctgtgtaaagggtgttggtggat
aatcgtgtgtattggtcttggcatacattgccattgaatgtaaccatgat
gtacagaggacctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70000397_70001335
seq2: B6Ng01-321E24.b_45_981 (reverse)

seq1  CACACACACACACACACACAAGCACACACATAACTTTACATTATCAAGAA  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCACACACACACAAGCACACACATAACTTTACATTATCAAGAA  50

seq1  GGAGTATGAGCACTTTTCTTCTGTAAAGGGTCATGTCTTATCTTCAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATGAGCACTTTTCTTCTGTAAAGGGTCATGTCTTATCTTCAATTT  100

seq1  TAAGCACTGCATTTTTGGCTGTGACTGCTGCTCCCTGTCATCCTGGTGCA  150
      ||||||||||||||| |||||||||||||||| ||||||||| |||||||
seq2  TAAGCACTGCATTTTCGGCTGTGACTGCTGCT-CCTGTCATCGTGGTGCA  149

seq1  AATGTAGTCACTTGTAAGAGTATGAAGACAGCCGAGTTCCAATTAGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTCACTTGTAAGAGTATGAAGACAGCCGAGTTCCAATTAGACTT  199

seq1  TATGTTACAGTTTGAACTTGAAATATTCCACTCAGGTTCACACTATGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTACAGTTTGAACTTGAAATATTCCACTCAGGTTCACACTATGTTC  249

seq1  GAACACTAGGAGCTCATCTACTAGAACTCTTTGGAGAATTTCCAGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTAGGAGCTCATCTACTAGAACTCTTTGGAGAATTTCCAGAAACT  299

seq1  TGAGATCTGGGGACTGGCGGGTAGAAGCAGGTCACCAGCGGTACACCTTC  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAGATCTGGGGACTGGCGTGTAGAAGCAGGTCACCAGCGGTACACCTTC  349

seq1  GAAGGTTACTACTTGCTTCTAGTTCTGAACTACCTTTACTATTTCCTGGT  400
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  GAAGGTTATTACTTGCTTCTAGTTCTGAACTACCTTTACTATTTGCTGGT  399

seq1  CAGCCTCAAATGTGAACACTTTCTGTCACATGCTCCCTCCACCATGAAAT  450
      ||||||| |||||| ||| ||| ||||||| ||||||||| ||| |||||
seq2  CAGCCTCTAATGTGTACATTTTATGTCACAGGCTCCCTCCGCCACGAAAT  449

seq1  ATGCTGTGACTTCCCCACTATGATGGTCTGCAACCCATTGAGACCACAAG  500
      |||  |||||||||||| || |||||||||||||||| ||||||||||||
seq2  ATGTGGTGACTTCCCCATTAAGATGGTCTGCAACCCAATGAGACCACAAG  499

seq1  TCAAGATAAACCATTGCAGTTTTGAATTAGTGATGTTATAAGAAACTGAT  550
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TCAAGATAAACCATTGCAGTTTTGAATTAGTGATGTTATAAGAAAGGGAT  549

seq1  TTTTTTCCTTCCTACTTTTCTATTTTGAATAGTGAACATATATTTCATTA  600
        |||||||||    |||||||||  |||||||| |||||||||||||||
seq2  CCTTTTCCTTCAACATTTTCTATTGAGAATAGTGGACATATATTTCATTA  599

seq1  TCAGCAGAATTAGTTTGAAAATATTTTCTTCACATCTATTTGCACAAATA  650
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  TCAGCAGAATTAGTTTGAAAATATGTTCTTCACATCTATTTGCCCAAATA  649

seq1  ACTATTTCAGTTATTTTTCTAGCTTAGCCTTGCAGATACCTCTCATCCTT  700
      || |||||||||||||||| |||| |||||||||||||||| ||||||| 
seq2  ACGATTTCAGTTATTTTTCCAGCTGAGCCTTGCAGATACCTGTCATCCTG  699

seq1  GTAATGTGACTACTGGCAAATCGTTTCCTTTATGCTGGTGGCTCCAGGGA  750
      | || ||||    ||||||||||||||||||| | ||| |||||||||||
seq2  GGAACGTGAGGGATGGCAAATCGTTTCCTTTAAGATGGCGGCTCCAGGGA  749

seq1  CAGCATACAAAGCTGGTTACATAATCTGCTGTAGTTAGTGATATGTGGTG  800
      ||||| |||||||||| |||| |||| |  | ||||||  ||| ||||||
seq2  CAGCAAACAAAGCTGGGTACACAATCCGAAGCAGTTAGCCATAAGTGGTG  799

seq1  GAAATTTTCTGTAGTGACTAAAAACGAACAAAAGCAGCCAGTGGCAGTGA  850
      |||||||| ||||||||  ||| |||||||||||||||||||||||||||
seq2  GAAATTTTTTGTAGTGAAAAAACACGAACAAAAGCAGCCAGTGGCAGTGA  849

seq1  CCTAAAACCTCCTTATACCTTGAGACAGCTAGGACTCTTATCCGTTTTCA  900
      |||||||||||||||||||||||||||||| || || ||  ||| |||| 
seq2  CCTAAAACCTCCTTATACCTTGAGACAGCTCGGCCTATTCCCCG-TTTCC  898

seq1  ACTCGTGAGAAAATATTCAAATGTTTATAGACTGAATTC  939
      |||   ||||||||||||| ||||| |||||  ||||||
seq2  ACTGAGGAGAAAATATTCACATGTTAATAGAAGGAATTC  937

seq1: chr18_69883881_69884851
seq2: B6Ng01-321E24.g_115_1083

seq1  TTTCCTCTGAGGGCTAACATTTGATACAGACCTCATGCCAACTTGAAGAC  50
      ||||||||||||||  || ||||| ||  ||||| ||||| |||||| ||
seq2  TTTCCTCTGAGGGCGGACCTTTGACACGTACCTCTTGCCATCTTGAACAC  50

seq1  ATCGGGGCAATGGTTGGGGAAAGCTAGCTGAGAGATATTCATTTTGACAA  100
       |||||||||||||||||||||||| ||||| ||| ||||||||||||||
seq2  TTCGGGGCAATGGTTGGGGAAAGCTGGCTGATAGACATTCATTTTGACAA  100

seq1  GACAGAATTATTTTTAAAATGTACTTTCTGAGCACTTGATGTATAGATAG  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACAGAATTATTTTTAAAATGTACTTTCTGACCACTTGATGTATAGATAG  150

seq1  GAATCTTTGGTTGTTCCTTAAGCAATCTGCAGGTGAGCGACCAATAATGA  200
      ||||||| ||||||||||||||   |||||||||||||||||||||||||
seq2  GAATCTTGGGTTGTTCCTTAAGGGGTCTGCAGGTGAGCGACCAATAATGA  200

seq1  GATAAATGTGCGTCTAGGAAACTTACTGCTTCTTCATGGACTCACAGGAT  250
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATAAATGTGCGTCTAGGAAACTTACTGCTTCTTCATGGACTCGCAGGAT  250

seq1  GAATAGCTCAGAGTTAGGCTAAATTTCCTCCAGGTCCCTCAGCAGGAAGA  300
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  GAATAGCTCAAAGTTAGGCTAAATTTCCTCCGGGTCCCTCAGCAGGAAGA  300

seq1  TCAAGGGCTCAGGGCTGATGCCAGGAAACCAGAGGTTAGGGAGCTCGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGCTCAGGGCTGATGCCAGGAAACCAGAGGTTAGGGAGCTCGCTC  350

seq1  CTTTTCATATGGATTTTATCCAGAGGGAAGACGTGAGGGCAAAATACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATATGGATTTTATCCAGAGGGAAGACGTGAGGGCAAAATACCAT  400

seq1  GTACCCGGAACTGTTCCACTTCAGACTGGGCACATCCATAAAAGCTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCGGAACTGTTCCACTTCAGACTGGGCACATCCATAAAAGCTATTT  450

seq1  CTTCAGAGCAGGCTGGTGCTGTCTCGGGTTTTCAGTTGGAGAAATCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGCAGGCTGGTGCTGTCTCGGGTTTTCAGTTGGAGAAATCCTAT  500

seq1  TCCTTCTTGGTCTATTTGCTGGGAGAGGCTGTAAATTCGCAGGAGCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTGGTCTATTTGCTGGGAGAGGCTGTAAATTCGCAGGAGCAGAT  550

seq1  GGCACCTTCTCAGATACACAGCTCTACAGACCCAGAGAGCACAGAACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTTCTCAGATACACAGCTCTACAGACCCAGAGAGCACAGAACAGC  600

seq1  CTTCAGCAGGTGAGGCAGCTCAAAGCTAAGCTCTGTTAAAGGAGCAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCAGGTGAGGCAGCTCAAAGCTAAGCTCTGTTAAAGGAGCAGTGT  650

seq1  GAAAGGAGAGCCTTGTTCACTTCTTCAAATCAATGGCTCTGTCTTAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGAGCCTTGTTCACTTCTTCAAATCAATGGCTCTGTCTTAATAT  700

seq1  GGATCCAGAG-AAGGAGTTAGGCTACAACTTGCTACTAGGAGAAAGGAAG  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGAGAAAGGAGTTAGGCTACAACTTGCTACTAGGAGAAAGGAAG  750

seq1  AAATAAAATGCGTGAAAACTTATTATTTCCCCCTTCCCATAAGAATCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGCGTGAAAACTTATTATTTCCCCCTTCCCATAAGAATCTTT  800

seq1  TATTCTCACATGTAGAATGTATCTTTGGCCTACTAGCGATTACATGAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCACATGTAGAATGTATCTTTGGCCTACTAGCGATTACATGAATG  850

seq1  TCATGGCTAAATACAGGCACAGCTATTGGCTGTGTAAGGGGTGTTGGTGG  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCATGGCTAAATACAGGCACAGCTATTGGCTGTGTAAAGGGTGTTGGTGG  900

seq1  ATAATCGTGTGTATTGGTCTTGGCTAACAGTGGCATTTGATGGTAACCCA  949
      ||||||||||||||||||||||||  ||| || || ||||  |||| |||
seq2  ATAATCGTGTGTATTGGTCTTGGCATACATTGCCA-TTGAATGTAA-CCA  948

seq1  TGATGTTACAGAGGACCTCTGC  971
      ||||| ||||||||||||||||
seq2  TGATG-TACAGAGGACCTCTGC  969