BAC Information

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BAC

Clone NameB6Ng01-322B07
Chromosome18 (Build37)
Map Location 62,053,763 - 62,212,183
singlet/doubletdoublet
Overlap geneAblim3, Sh3tc2
Upstream geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738
Downstream geneAdrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322B07.bB6Ng01-322B07.g
ACCGA111018GA111019
length1,1731,171
definitionB6Ng01-322B07.b B6Ng01-322B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,211,001 - 62,212,183)(62,053,763 - 62,054,923)
sequence
gaattcttcaaccatccaatgcattctgataactgacaatgccctgagtt
actaagagtgactatatctcctgcctgggctctctgtggtcctacttctg
ccctgctggttgtctagctccttagttataaaaatgagctgataaatatg
tctaccctctgaactcttctccccctctccctatcttgtgttttgaggca
gagtccagctatgtagcccaggctggacttgagctctgattctcctcctt
cagtaaccagagtgttgggatctataggtgtgtgcccatatgggtatagg
acaatatctaatctttcactctgaaattaggcagtgaaatacttcccaaa
gctgtcatggagtcttgcttggtacatagacctttggagctgcctccaaa
aactccccaaatgtacaaagacatagcctctgctccttcacagagaaaga
tcccttcgagaacacgcctgcagaagcaattgcctctgagacggtttcct
gtggaatcaatgcctagaatgaggacaacatctgctgggagattcgggga
gttttactagtcctctgtgaagctctgccaccaggagtccagcagcaaat
acctggagctgattccacaaatattgcacaaaatattgcacaaaatctat
tcacttctctctaccaggagaggtaatctcttgcgcactcggtggaaagc
attcgcctgtccttaaaaagttattcgccaatgagcttgaggaaggatta
gaaggcaggacatcctgcagaaaagagagagggtttgggtcagcaagggg
agattcatccagacatagaggaagaaggtcgaataaaactgagaaccagg
taaccagccacgtggcatgaggtagactatttaaaacaggataattgagt
tacgagctagcttggaaacaagccaaagctattgggccaaggcatatgtt
catatagaagtctcagagatgttgtgtcaggaacttatgtgtatgttgaa
aacccgcagccacctgtaccacctcttcagtgctgtcctttctaccccag
cagactgagtatttaggtccggtcacttgcacctccgctcacacacttgg
tcagaaagatggagtgctcagtcctcagatgcttcactcccgtcatactc
taactccggatcagggtcttaaa
gaattctgtcagactttaatgggtaacagaaacactaccaatagccagag
ctaataactaaaagaaatcaagtcagatctttgctggcttctctttctct
caagtagccaagggaagaagacactccctagatatctagcagacagaggt
caatccaaggctttatggtttgtgccatgtgatcgtctctggcccagtga
agcaggtaaggagaggatcaccccgctcgttccgtggctgagcagactga
gatgtggggtacagaagccatgtgcctgatgccagctcaatccttggata
tttagccagctgtcttcctacataagagatagactgcttcctgacatcct
gccttgtaaaaaaaacaacaacaaaacaacaacaacaacaacaacaacaa
acaatggagacttcttctggcattgttggtagcaaacctgatcactggca
atattaaggtcaagaaaccccaagaaatcattgctatttggttctcaacc
cccagctgtgtgagttgttctgacaagaaaggagaaaacgtcatcaaagc
acacaaatatgttgttcacttgctcagcctctctaagctagattaatggg
caaagcatcctctatgtttacacccagcagtggactttgctactggctaa
ggagtattctcccccagagtgctgacagagtcacagatgctgaggtaatc
caaatcgccacactcagtctagtagcaggactgaaggcatccaagggctg
cctgggcgggtgagttgtgggtggtgaccagctgctctgggtctgaaggt
aatctctggcctggatttagctcaaggggagaaatggcctcaggaagggg
atggcatgggatccagacagcagaaggaggtctggtttatagctccagag
agtgaagagattaaaggcagaggttctggataaaaagagaagatgcacag
cgtcttcctaccattaactcctgggccattgccagattcaaggatgagaa
gactggtgttgggacaacttcttgggtcacacctattggtcagtcttttt
tgtgcttccaaatttcctctccacttgagaacatatgttaggtctcctaa
gctcatagtcccaatggaagaggcccatatggcacagttaataccgaagt
gtctccagtcttcctgaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62211001_62212183
seq2: B6Ng01-322B07.b_50_1222 (reverse)

seq1  TTTAAGGACACTGATCTGGAG-TAGAGTATGAAGAGGAGATGAAGCATCT  49
      ||||| ||| |||||| |||| |||||||||| | |||| ||||||||||
seq2  TTTAA-GACCCTGATCCGGAGTTAGAGTATGACG-GGAG-TGAAGCATCT  47

seq1  GA-GACTGAGGCACTCCCATTCCTCTCCTGACCAAAGTGTGTGAGCG--A  96
      || |||||| ||||| ||||  || | |||||| |||||||||||||   
seq2  GAGGACTGA-GCACT-CCAT--CT-TTCTGACC-AAGTGTGTGAGCGGAG  91

seq1  GTGCAAGTGACCGGGCCTAAAATTACTCAGTCTGCTGGGGTTAGAAAGGA  146
      |||||||||||||| ||||||  ||||||||||||||||| |||||||||
seq2  GTGCAAGTGACCGGACCTAAA--TACTCAGTCTGCTGGGG-TAGAAAGGA  138

seq1  CAGCACTGAAGAGGTTGGTACAGGTGGCTGCGGGTTTTTCAACATACACA  196
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  CAGCACTGAAGAGG-TGGTACAGGTGGCTGCGGG-TTTTCAACATACACA  186

seq1  TAAGTTCCCTGACACAACATCTCTGAGACTTCTATATGAACATATGCCTT  246
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTT-CCTGACACAACATCTCTGAGACTTCTATATGAACATATGCCTT  235

seq1  GG-CCAATAGCTTTGGCTTGTTTCCAAGCTAGCTCGTAACTCAATTATCC  295
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAATAGCTTTGGCTTGTTTCCAAGCTAGCTCGTAACTCAATTATCC  285

seq1  TGTTTTAAATAGTCTACCTCATGCCACGTGGCTGGTTACCTGGTTCTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAATAGTCTACCTCATGCCACGTGGCTGGTTACCTGGTTCTCAG  335

seq1  TTTTATTCGACCTTCTTCCTCTATGTCTGGATGAATCTCCCCTTGCCTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTATTCGACCTTCTTCCTCTATGTCTGGATGAATCTCCCCTTG-CTGA  384

seq1  CCCAAACCCTCTCTC-TTTCTGCAGGATGTCCTGCCTTCTAATCCTTCCT  444
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCAAACCCTCTCTCTTTTCTGCAGGATGTCCTGCCTTCTAATCCTTCCT  434

seq1  CAAGCTCATTGGCGAATAACTTTTTAAGGACAGGCGAATGCTTTCCACCG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCATTGGCGAATAACTTTTTAAGGACAGGCGAATGCTTTCCACCG  484

seq1  AGTGCGCAAGAGATTACCTCTCCTGGTAGAGAGAAGTGAATAGATTTTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGCAAGAGATTACCTCTCCTGGTAGAGAGAAGTGAATAGATTTTGT  534

seq1  GCAATATTTTGTGCAATATTTGTGGAATCAGCTCCAGGTATTTGCTGCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTTTGTGCAATATTTGTGGAATCAGCTCCAGGTATTTGCTGCTG  584

seq1  GACTCCTGGTGGCAGAGCTTCACAGAGGACTAGTAAAACTCCCCGAATCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGGTGGCAGAGCTTCACAGAGGACTAGTAAAACTCCCCGAATCT  634

seq1  CCCAGCAGATGTTGTCCTCATTCTAGGCATTGATTCCACAGGAAACCGTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGATGTTGTCCTCATTCTAGGCATTGATTCCACAGGAAACCGTC  684

seq1  TCAGAGGCAATTGCTTCTGCAGGCGTGTTCTCGAAGGGATCTTTCTCTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGCAATTGCTTCTGCAGGCGTGTTCTCGAAGGGATCTTTCTCTGT  734

seq1  GAAGGAGCAGAGGCTATGTCTTTGTACATTTGGGGAGTTTTTGGAGGCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCAGAGGCTATGTCTTTGTACATTTGGGGAGTTTTTGGAGGCAG  784

seq1  CTCCAAAGGTCTATGTACCAAGCAAGACTCCATGACAGCTTTGGGAAGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGGTCTATGTACCAAGCAAGACTCCATGACAGCTTTGGGAAGTA  834

seq1  TTTCACTGCCTAATTTCAGAGTGAAAGATTAGATATTGTCCTATACCCAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGCCTAATTTCAGAGTGAAAGATTAGATATTGTCCTATACCCAT  884

seq1  ATGGGCACACACCTATAGATCCCAACACTCTGGTTACTGAAGGAGGAGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCACACACCTATAGATCCCAACACTCTGGTTACTGAAGGAGGAGAA  934

seq1  TCAGAGCTCAAGTCCAGCCTGGGCTACATAGCTGGACTCTGCCTCAAAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTCAAGTCCAGCCTGGGCTACATAGCTGGACTCTGCCTCAAAAC  984

seq1  ACAAGATAGGGAGAGGGGGAGAAGAGTTCAGAGGGTAGACATATTTATCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAGGGAGAGGGGGAGAAGAGTTCAGAGGGTAGACATATTTATCA  1034

seq1  GCTCATTTTTATAACTAAGGAGCTAGACAACCAGCAGGGCAGAAGTAGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTTTATAACTAAGGAGCTAGACAACCAGCAGGGCAGAAGTAGGA  1084

seq1  CCACAGAGAGCCCAGGCAGGAGATATAGTCACTCTTAGTAACTCAGGGCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGAGCCCAGGCAGGAGATATAGTCACTCTTAGTAACTCAGGGCA  1134

seq1  TTGTCAGTTATCAGAATGCATTGGATGGTTGAAGAATTC  1183
      |||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGTTATCAGAATGCATTGGATGGTTGAAGAATTC  1173

seq1: chr18_62053763_62054923
seq2: B6Ng01-322B07.g_70_1240

seq1  GAATTCTGTCAGACTTTAATGGGTAACAGAAACACTACCAATAGCCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAGACTTTAATGGGTAACAGAAACACTACCAATAGCCAGAG  50

seq1  CTAATAACTAAAAGAAATCAAGTCAGATCTTTGCTGGCTTCTCTTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACTAAAAGAAATCAAGTCAGATCTTTGCTGGCTTCTCTTTCTCT  100

seq1  CAAGTAGCCAAGGGAAGAAGACACTCCCTAGATATCTAGCAGACAGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGCCAAGGGAAGAAGACACTCCCTAGATATCTAGCAGACAGAGGT  150

seq1  CAATCCAAGGCTTTATGGTTTGTGCCATGTGATCGTCTCTGGCCCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAAGGCTTTATGGTTTGTGCCATGTGATCGTCTCTGGCCCAGTGA  200

seq1  AGCAGGTAAGGAGAGGATCACCCCGCTCGTTCCGTGGCTGAGCAGACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTAAGGAGAGGATCACCCCGCTCGTTCCGTGGCTGAGCAGACTGA  250

seq1  GATGTGGGGTACAGAAGCCATGTGCCTGATGCCAGCTCAATCCTTGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGGTACAGAAGCCATGTGCCTGATGCCAGCTCAATCCTTGGATA  300

seq1  TTTAGCCAGCTGTCTTCCTACATAAGAGATAGACTGCTTCCTGACATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCAGCTGTCTTCCTACATAAGAGATAGACTGCTTCCTGACATCCT  350

seq1  GCCTTGTAAAAAAAACAACAACAAAACAACAACAACAACAACAACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTAAAAAAAACAACAACAAAACAACAACAACAACAACAACAACAA  400

seq1  ACAATGGAGACTTCTTCTGGCATTGTTGGTAGCAAACCTGATCACTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAGACTTCTTCTGGCATTGTTGGTAGCAAACCTGATCACTGGCA  450

seq1  ATATTAAGGTCAAGAAACCCCAAGAAATCATTGCTATTTGGTTCTCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGGTCAAGAAACCCCAAGAAATCATTGCTATTTGGTTCTCAACC  500

seq1  CCCAGCTGTGTGAGTTGTTCTGACAAGAAAGGAGAAAACGTCATCAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGTGTGAGTTGTTCTGACAAGAAAGGAGAAAACGTCATCAAAGC  550

seq1  ACACAAATATGTTGTTCACTTGCTCAGCCTCTCTAAGCTAGATTAATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATATGTTGTTCACTTGCTCAGCCTCTCTAAGCTAGATTAATGGG  600

seq1  CAAAGCATCCTCTATGTTTACACCCAGCAGTGGACTTTGCTACTGGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATCCTCTATGTTTACACCCAGCAGTGGACTTTGCTACTGGCTAA  650

seq1  GGAGTATTCTCCCCCAGAGTGCTGACAGAGTCACAGATGCTGAGGTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATTCTCCCCCAGAGTGCTGACAGAGTCACAGATGCTGAGGTAATC  700

seq1  CAAATCGCCACACTCAGTCTAGTAGCAGGACTGAAGGCATCCAAGGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCGCCACACTCAGTCTAGTAGCAGGACTGAAGGCATCCAAGGGCTG  750

seq1  CCTGGGCGGGTGAGTTGTGGGTGGTGACCAGCTGCTCTGGGTCTGAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCGGGTGAGTTGTGGGTGGTGACCAGCTGCTCTGGGTCTGAAGGT  800

seq1  AATCTCTGGCCTGGATTTAGCTCAAGGGGAGAAATGGCCTCAGGGAAGGG  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATCTCTGGCCTGGATTTAGCTCAAGGGGAGAAATGGCCTCA-GGAAGGG  849

seq1  GATGGCATGGGATCCAGACAGCAGAAGGAGGTCTGGTTAATAGCTCCAGA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATGGCATGGGATCCAGACAGCAGAAGGAGGTCTGGTTTATAGCTCCAGA  899

seq1  GAGTGAAGAGATT-AAGGCAGAGGTTCTGGATAAAAAGAGGAAGATGCAC  949
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  GAGTGAAGAGATTAAAGGCAGAGGTTCTGGATAAAAAGA-GAAGATGCAC  948

seq1  AGCGTC-TCCTACCATTTACTCCTGGCCCATTGCCAGATTC-AGGATGAG  997
      |||||| |||||||||| |||||||| |||||||||||||| ||||||||
seq2  AGCGTCTTCCTACCATTAACTCCTGGGCCATTGCCAGATTCAAGGATGAG  998

seq1  GAAGGACTGGTGGTGGGGACAAC-TCTTGGGTCACAC--ATT-GTCAGTC  1043
        | ||||||| || |||||||| |||||||||||||  ||| |||||||
seq2  --AAGACTGGT-GTTGGGACAACTTCTTGGGTCACACCTATTGGTCAGTC  1045

seq1  -TTTTTGTGCTT-CAGATTCTCT-TCCACTTGAGGACATATG-TAGGTCT  1089
       ||||||||||| || |||  || |||||||||| ||||||| |||||||
seq2  TTTTTTGTGCTTCCAAATTTCCTCTCCACTTGAGAACATATGTTAGGTCT  1095

seq1  CCCAGGC-CATAG-GCCAATGGAGAAG--CCATAT-GCACAG-TAATACC  1133
      || | || |||||  ||||||||  ||  |||||| |||||| |||||||
seq2  CCTAAGCTCATAGTCCCAATGGAAGAGGCCCATATGGCACAGTTAATACC  1145

seq1  CGGAAAGTGTCT-CAGTCTTCCTGAGGTC  1161
          |||||||| ||||||||||||||||
seq2  ---GAAGTGTCTCCAGTCTTCCTGAGGTC  1171