BAC Information

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BAC

Clone NameB6Ng01-323E24
Chromosome18 (Build37)
Map Location 56,230,793 - 56,321,786
singlet/doubletdoublet
Overlap geneLOC100043104
Upstream geneLOC100043089, LOC667401, LOC667409, LOC629043, LOC100043099, LOC629057
Downstream geneLOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323E24.bB6Ng01-323E24.g
ACCGA111922GA111923
length7261,061
definitionB6Ng01-323E24.b B6Ng01-323E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,321,064 - 56,321,786)(56,230,793 - 56,231,860)
sequence
gaattcaggaacatcagcccaggggtaatactacccataatggcctgggt
tctctcttatcaaccattaattaatgccttacattaggctcttatgaatg
aattttctcaattgaggtcccctcctttcagattaatattatcttgtgtc
aaattgagatagaattagccagcatactatccaaaaatactgctaaatat
attcactttatcatttaaagcttcatttatcatggagttaataatgacct
tattgttctcattagcctggttttgtgtctcgaaatatttcgtaaaaaga
tcaaatgttgttccacctgctaagaatggtgggaaatgaaccctttaaat
gagcattttataagaggtaagcctgtcgtatttggtctcatactttttct
ggtaagcatccttactcttttacttggtccccggggtctatttttgtact
ggccatatgtttcaggtgcctttccgatagctgtcatgaaatacatggtc
aaagcagcttgagggaggaatggtttagtttggctcaccatttgggggta
tattccatctgatggggaaggcatggtggcaggattgtacagtggttgat
cacattgcacctgcatccaggaacacacagagagaggagcacactgctgc
tcagttaatttctttcttttctttctttctttcttttctttctttctttc
tgtctttccttccttccttcccctcc

gaattcattgtgagactatttataactacagcgccgtcgatagagacgat
gatttaatagtggttgtaagggtgttctgacaagaggcattaatatcaga
agcttttcccagagtgctgcaaacagtggcgtgaagatatagctcgcctg
agctatttttcatgggcgaccctctttgtgttcattagcacttacaattc
tagggttgagaagccacggttttaactctaatttgtatgtaatgagcata
ttctatgcactaagactctccttcattaatgaagctgagaaagagagaaa
aaaaaaagaggctggggactctggtgaaaaaaggacatccaatctcatag
aaatttaccaattcctgttatgcagatggtatttgaagatggaggatctg
ctgtctagacagtcagggtgggtaataaagattctataacacctctcaaa
agaggtaaggcaagctgtgctgcctgccaatacagctcccttcaataacg
ctaactctaatggatggggctgcctctggatatatacaggcaggtcagga
ctgccaatgactacagagtcatcaaacagtttatctaaagagtcatgagg
attaaccacacatctgaagatgaagtttaatgaagcatgtcaccaaagat
gtctttgtctgttaataagacatctggctttcaagagaacgaacaaatca
gaacctttttagcttgaaatgtaaaaatcctacttcaaattaaaggtgaa
actatattcaagggacttctctaatacaaacagcccagaaccaaatatag
ggttccaggaatattcacattggaatgactgaaggtatttttgcagtata
aagcaagaataaatgtatcttatttttgtgaaaatatattatttgatgat
gaccagagaacacgttatgattaacattataaagtaacatgacccagtga
gccaacgctgggtttcactctccccaaagtctggcaaaagagtttgccag
acactgtataaaatggctattttgttcatctactgatgtgttattttgat
aggcattatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_56321064_56321786
seq2: B6Ng01-323E24.b_48_773 (reverse)

seq1  GGAGGGGAAGGAAGGAAGG-AAGAAAGAAAGAAAGAAAG-AAAGAAAGAA  48
      ||||||||||||||||||| |||| |||||||||||||| ||||||||||
seq2  GGAGGGGAAGGAAGGAAGGAAAGACAGAAAGAAAGAAAGAAAAGAAAGAA  50

seq1  AGAAAG-AAAGAAAGAAATTAACTGAGCAGCAGTGTGCTCCTCTCTCTGT  97
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAGAAAGAAATTAACTGAGCAGCAGTGTGCTCCTCTCTCTGT  100

seq1  GTGTTCCTGGATGCAGGTGCAATGTGATCAACCACTGTACAATCCTGCCA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTGGATGCAGGTGCAATGTGATCAACCACTGTACAATCCTGCCA  150

seq1  CCATGCCTTCCCCATCAGATGGAATATACCCCCAAATGGTGAGCCAAACT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTTCCCCATCAGATGGAATATACCCCCAAATGGTGAGCCAAACT  200

seq1  AAACCATTCCTCCCTCAAGCTGCTTTGACCATGTATTTCATGACAGCTAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTCCTCCCTCAAGCTGCTTTGACCATGTATTTCATGACAGCTAT  250

seq1  CGGAAAGGCACCTGAAACATATGGCCAGTACAAAAATAGACCCCGGGGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAGGCACCTGAAACATATGGCCAGTACAAAAATAGACCCCGGGGAC  300

seq1  CAAGTAAAAGAGTAAGGATGCTTACCAGAAAAAGTATGAGACCAAATACG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAAGAGTAAGGATGCTTACCAGAAAAAGTATGAGACCAAATACG  350

seq1  ACAGGCTTACCTCTTATAAAATGCTCATTTAAAGGGTTCATTTCCCACCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTACCTCTTATAAAATGCTCATTTAAAGGGTTCATTTCCCACCA  400

seq1  TTCTTAGCAGGTGGAACAACATTTGATCTTTTTACGAAATATTTCGAGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCAGGTGGAACAACATTTGATCTTTTTACGAAATATTTCGAGAC  450

seq1  ACAAAACCAGGCTAATGAGAACAATAAGGTCATTATTAACTCCATGATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCAGGCTAATGAGAACAATAAGGTCATTATTAACTCCATGATAA  500

seq1  ATGAAGCTTTAAATGATAAAGTGAATATATTTAGCAGTATTTTTGGATAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTTTAAATGATAAAGTGAATATATTTAGCAGTATTTTTGGATAG  550

seq1  TATGCTGGCTAATTCTATCTCAATTTGACACAAGATAATATTAATCTGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGCTAATTCTATCTCAATTTGACACAAGATAATATTAATCTGAA  600

seq1  AGGAGGGGACCTCAATTGAGAAAATTCATTCATAAGAGCCTAATGTAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGACCTCAATTGAGAAAATTCATTCATAAGAGCCTAATGTAAGG  650

seq1  CATTAATTAATGGTTGATAAGAGAGAACCCAGGCCATTATGGGTAGTATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTAATGGTTGATAAGAGAGAACCCAGGCCATTATGGGTAGTATT  700

seq1  ACCCCTGGGCTGATGTTCCTGAATTC  723
      ||||||||||||||||||||||||||
seq2  ACCCCTGGGCTGATGTTCCTGAATTC  726


seq1: chr18_56230793_56231860
seq2: B6Ng01-323E24.g_60_1120

seq1  GAATTCATTGTGAGACTATTTATAACTACAGCGCCGTCGATAGAGACGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGAGACTATTTATAACTACAGCGCCGTCGATAGAGACGAT  50

seq1  GATTTAATAGTGGTTGTAAGGGTGTTCTGACAAGAGGCATTAATATCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATAGTGGTTGTAAGGGTGTTCTGACAAGAGGCATTAATATCAGA  100

seq1  AGCTTTTCCCAGAGTGCTGCAAACAGTGGCGTGAAGATATAGCTCGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCCCAGAGTGCTGCAAACAGTGGCGTGAAGATATAGCTCGCCTG  150

seq1  AGCTATTTTTCATGGGCGACCCTCTTTGTGTTCATTAGCACTTACAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTTTCATGGGCGACCCTCTTTGTGTTCATTAGCACTTACAATTC  200

seq1  TAGGGTTGAGAAGCCACGGTTTTAACTCTAATTTGTATGTAATGAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTGAGAAGCCACGGTTTTAACTCTAATTTGTATGTAATGAGCATA  250

seq1  TTCTATGCACTAAGACTCTCCTTCATTAATGAAGCTGAGAAAGAGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGCACTAAGACTCTCCTTCATTAATGAAGCTGAGAAAGAGAGAAA  300

seq1  AAAAAAAGAGGCTGGGGACTCTGGTGAAAAAAGGACATCCAATCTCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAGGCTGGGGACTCTGGTGAAAAAAGGACATCCAATCTCATAG  350

seq1  AAATTTACCAATTCCTGTTATGCAGATGGTATTTGAAGATGGAGGATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACCAATTCCTGTTATGCAGATGGTATTTGAAGATGGAGGATCTG  400

seq1  CTGTCTAGACAGTCAGGGTGGGTAATAAAGATTCTATAACACCTCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAGACAGTCAGGGTGGGTAATAAAGATTCTATAACACCTCTCAAA  450

seq1  AGAGGTAAGGCAAGCTGTGCTGCCTGCCAATACAGCTCCCTTCAATAACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAAGGCAAGCTGTGCTGCCTGCCAATACAGCTCCCTTCAATAACG  500

seq1  CTAACTCTAATGGATGGGGCTGCCTCTGGATATATACAGGCAGGTCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTAATGGATGGGGCTGCCTCTGGATATATACAGGCAGGTCAGGA  550

seq1  CTGCCAATGACTACAGAGTCATCAAACAGTTTATCTAAAGAGTCATGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAATGACTACAGAGTCATCAAACAGTTTATCTAAAGAGTCATGAGG  600

seq1  ATTAACCACACATCTGAAGATGAAGTTTAATGAAGCATGTCACCAAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCACACATCTGAAGATGAAGTTTAATGAAGCATGTCACCAAAGAT  650

seq1  GTCTTTGTCTGTTAATAAGACATCTGGCTTTCAAGAGAACGAACAAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTCTGTTAATAAGACATCTGGCTTTCAAGAGAACGAACAAATCA  700

seq1  GAACCTTTTTAGCTTGAAATGTAAAAATCCTACTTCAAATTAAAGGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTTTAGCTTGAAATGTAAAAATCCTACTTCAAATTAAAGGTGAA  750

seq1  ACTATATTCAA-GGACTTCTCTAATACAAACAGCCCAGAACCAAATATAG  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTCAAGGGACTTCTCTAATACAAACAGCCCAGAACCAAATATAG  800

seq1  GGTTCCAGGAATATTCACATTGGAATGACTGAAGGTATTTTTGCAGTATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGGAATATTCACATTGGAATGACTGAAGGTATTTTTGCAGTATA  850

seq1  AAGCAAGAATAAATGTATCTTATTTTTGTGAAAATATATTATTTGATGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAATAAATGTATCTTATTTTTGTGAAAATATATTATTTGATGAT  900

seq1  GACCAGAGAACACGTTATGATTAACATTATAAAAGTAACATGACCCAGTG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACCAGAGAACACGTTATGATTAACATTAT-AAAGTAACATGACCCAGTG  949

seq1  AGCCAACGCTGGG-TTCACTCTCCCCAAAGTCTGGCAAAAGAGTTTGCCA  998
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCCAACGCTGGGTTTCACTCTCCCCAAAGTCTGGCAAAAGAGTTTGCCA  999

seq1  GACACTGTTAATTAAAATGGGCTATTTTTGTTTCATCTACTTGATGTGTT  1048
      ||||||||    |||||| |||||||||   ||||||||| ||||||| |
seq2  GACACTGT---ATAAAAT-GGCTATTTT--GTTCATCTAC-TGATGTG-T  1041

seq1  TATTTTGATAGGCATTATCT  1068
      ||||||||||||||||||||
seq2  TATTTTGATAGGCATTATCT  1061


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