BAC Information

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BAC

Clone NameB6Ng01-324J06
Chromosome18 (Build37)
Map Location 33,803,494 - 33,962,779
singlet/doubletdoublet
Overlap geneLOC100041258, Epb4.1l4a
Upstream geneLOC100041170, Tslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281
Downstream geneEG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324J06.bB6Ng01-324J06.g
ACCGA112855GA112856
length1,1021,072
definitionB6Ng01-324J06.b B6Ng01-324J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,803,494 - 33,804,602)(33,961,707 - 33,962,779)
sequence
gaattctaaaggacaataacaaaataataaaacaaaagtgaacccatcag
agttggacaggacaaaccaatagaaggaaaagagcccaagagaaggcaca
agaatcagagaccccattgttcatactctcaagaatcccataaaaacact
gaactaaaagccgtaagatagtcacagaggacctggtacagagccacaca
ggccctgtgcatgctgcctcatcactgtgagttcataagcttcattattt
gaaaacatttgaaaagttgttatgcagaaagaggaataggttaacgagaa
ggtgactcacaaagagaatcaaggaaaacagaagtcaatgccatgggaaa
agattcttcactcaggatgcatgagaagccacccatgtactctagtgtct
tccagattcaataggactcacacacacacacacacacacacacacacaca
cacacacacactacatgtacaaactcacaaagactatggttgcatgcaca
ggggctgcacagtttcaagccagttgaggtcccattgctgaaaggggaag
tagacactagttcccatccctaaccaagaaactatctccagtactccagt
agacatctgtttgcaatggaaaatgttttttcctgtggagtctcactgga
tagatcaagcccacttgagagcaggctccagccccagcagtagatgtcaa
cacaaaacgaacttaatgatatatttgtagactttttctttcatatttct
ttgttttgtcagaggttttttttttgtcttactagtcttttgtttattta
ttatgatttcactctgtggatcagatggtctttcacttgtgatttttttc
tcctcttctgcctctcaagtgctgggattacaggtgcccaacaccatgcc
cacctttcatgttaaaagtttgacatgaggttttatgcatttgtgatcca
attaattaggttaagacacaaatgtaggcctttaagctttagcataaata
tagtatttataaatggtgattccctgtgcagcatgtctgtgtttttaggt
gattttcctctctaatattttcctaatttttattaatttctttatttaca
tt
gaattctcttctgcttaaaactagcgggcagttggtgaaatggctcggca
ggttaggggtacctactgccttgcctaggaactgagtccttgggaccagc
gtggtgaagggagagagctgagtgctgcagactgtcctgagtgcacagtg
atatgcacacatgtgcacacataaataaatgccacgaaacagtagatagt
aagccgaggaaccaaagcccctacgtcacttgctatttaacaccagctgg
ctaggctggcttcaaacctgtggtgagacccctgcctctgcctctcaagt
gctgagaatatgggtctgtcaccaagcccggcttccaggctctttcataa
atgaacctctggtgatgactcatttccatttttgtacattcatgtgagtc
tcgcttgccagtagtgaagtaacctgctaccttttcactgataattgtga
tggctcctcatcagcagctgggtggcaagtgagacctcacaaaagtattg
caggtcactcaaggtttgtgaatggcatgcattgtaggggtgaattttgt
ctcctttgcttacagaagaagtcctgacatccaagcaaaagaagaactgt
ggaagcacatccagtgagtactgggacccccggatgggtaccatttcaga
atatatatgtgagtgttgtacatgtgcacgcccggtgcttctggatcccc
tgcaactagaattatggatgacggtgaggcaccatgtgggtgttgaacct
cggccttgtgcaagagcagcaaatgctcttaatcgctgagccgtacagcc
agcaggatatgggcagttttgaattggatacaagataaaccaatgctact
gcaaggagccttggtttggcgccctggcaggtgccgtgctctggtgatgc
ctccggcaggtgccacgctcctccctgtatcctctggtgctgacatcagg
gttgggcctcatacaccagctgctgtctataggcagaccaatgcctcctg
tccaagtcttctagttgcctgtaaatgccacctccagctagccagtggtt
tacaaaggaatgcaagagaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_33803494_33804602
seq2: B6Ng01-324J06.b_43_1144

seq1  GAATTCTAAAGGACAATAACAAAATAATAAAACAAAAGTGAACCCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGGACAATAACAAAATAATAAAACAAAAGTGAACCCATCAG  50

seq1  AGTTGGACAGGACAAACCAATAGAAGGAAAAGAGCCCAAGAGAAGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGACAGGACAAACCAATAGAAGGAAAAGAGCCCAAGAGAAGGCACA  100

seq1  AGAATCAGAGACCCCATTGTTCATACTCTCAAGAATCCCATAAAAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGAGACCCCATTGTTCATACTCTCAAGAATCCCATAAAAACACT  150

seq1  GAACTAAAAGCCGTAAGATAGTCACAGAGGACCTGGTACAGAGCCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAAGCCGTAAGATAGTCACAGAGGACCTGGTACAGAGCCACACA  200

seq1  GGCCCTGTGCATGCTGCCTCATCACTGTGAGTTCATAAGCTTCATTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTGCATGCTGCCTCATCACTGTGAGTTCATAAGCTTCATTATTT  250

seq1  GAAAACATTTGAAAAGTTGTTATGCAGAAAGAGGAATAGGTTAACGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTTGAAAAGTTGTTATGCAGAAAGAGGAATAGGTTAACGAGAA  300

seq1  GGTGACTCACAAAGAGAATCAAGGAAAACAGAAGTCAATGCCATGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTCACAAAGAGAATCAAGGAAAACAGAAGTCAATGCCATGGGAAA  350

seq1  AGATTCTTCACTCAGGATGCATGAGAAGCCACCCATGTACTCTAGTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTCACTCAGGATGCATGAGAAGCCACCCATGTACTCTAGTGTCT  400

seq1  TCCAGATTCAATAGGACTCACACACACACACACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTCAATAGGACTCACACACACACACACACACACACACACACACA  450

seq1  CACACACACACTACATGTACAAACTCACAAAGACTATGGTTGCATGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACTACATGTACAAACTCACAAAGACTATGGTTGCATGCACA  500

seq1  GGGGCTGCACAGTTTCAAGCCAGTTGAGGTCCCATTGCTGAAAGGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCACAGTTTCAAGCCAGTTGAGGTCCCATTGCTGAAAGGGGAAG  550

seq1  TAGACACTAGTTCCCATCCCTAACCAAGAAACTATCTCCAGTACTCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTAGTTCCCATCCCTAACCAAGAAACTATCTCCAGTACTCCAGT  600

seq1  AGACATCTGTTTGCAATGGAAAATGTTTTTTCCTGTGGAGTCTCACTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTGTTTGCAATGGAAAATGTTTTTTCCTGTGGAGTCTCACTGGA  650

seq1  TAGATCAAGCCCACTTGAGAGCAGGCTCCAGCCCCAGCAGTAGATGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAAGCCCACTTGAGAGCAGGCTCCAGCCCCAGCAGTAGATGTCAA  700

seq1  CACAAAACGAACTTAATGATATATTTGTAGACTTTTTCTTTCATATTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACGAACTTAATGATATATTTGTAGACTTTTTCTTTCATATTTCT  750

seq1  TTGTTTTGTCAGAGGTTTTTTTTTTGTCTTACTAGTCTTTTGTTTATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTCAGAGGTTTTTTTTTTGTCTTACTAGTCTTTTGTTTATTTA  800

seq1  TTATGATTTCACTCTGTGGATCAGATGGTCTTTCACTTGTGATTTTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTTCACTCTGTGGATCAGATGGTCTTTCACTTGTGATTTTTTTC  850

seq1  TCCTCTTCTGCCTCTCAAGTGCTGGGATTACAGGTGCCCAACACCATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTGCCTCTCAAGTGCTGGGATTACAGGTGCCCAACACCATGCC  900

seq1  CACCTTTCATGTTAAAAGTTTGACATGAGGTTTTATGCATTTGTGATCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACCTTTCATGTTAAAAGTTTGACATGAGGTTTTATGCATTTGTGATCC-  949

seq1  AATTAATTAGGTTAAGAACACAAATGTAGGCCTTTAAGCTTTAAGCATAA  1000
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  AATTAATTAGGTTAAG-ACACAAATGTAGGCCTTTAAGCTTT-AGCATAA  997

seq1  ATATTAGTATTTATAAATGGTGATTCCCTGTGCAGCATGTCTGTGTTTTT  1050
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATA-TAGTATTTATAAATGGTGATTCCCTGTGCAGCATGTCTGTGTTTTT  1046

seq1  AGTTGATTTTCCCTCTCTAATATTTTTCCTTATTTTTTATTATTTTCTTT  1100
      || ||||||| |||||||||||||||  | || ||||||||| |||||||
seq2  AGGTGATTTT-CCTCTCTAATATTTT--CCTAATTTTTATTAATTTCTTT  1093

seq1  ATTTACATT  1109
      |||||||||
seq2  ATTTACATT  1102

seq1: chr18_33961707_33962779
seq2: B6Ng01-324J06.g_68_1139 (reverse)

seq1  GCTTCTCTTTGCATTCCTTTGTAAACCACTGGCCTAGCT-GAGGT-GCAT  48
      ||||||| |||||||||||||||||||||||| |||||| ||||| ||||
seq2  GCTTCTC-TTGCATTCCTTTGTAAACCACTGG-CTAGCTGGAGGTGGCAT  48

seq1  TTACAGGCAAACTAAGAGACCTTGGACAGGAGGCATTGGTCTGCCTATAG  98
      |||||||| |||||  ||| ||||||||||||||||||||||||||||||
seq2  TTACAGGC-AACTAGAAGA-CTTGGACAGGAGGCATTGGTCTGCCTATAG  96

seq1  ACAGCAGCTGGTGTATGAGGCCCAACCCTGATGTCAGCACCAGAGGATAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCTGGTGTATGAGGCCCAACCCTGATGTCAGCACCAGAGGATAC  146

seq1  A-GGAGGAGCGTGGCACCTGCCGGAGGCATCACCAGAGCACGGCACCTGC  197
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAGCGTGGCACCTGCCGGAGGCATCACCAGAGCACGGCACCTGC  196

seq1  CAGGGCGCCAAACCAAGGCTCCTTGCAGTAGCATTGGTTTATCTTGTATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCGCCAAACCAAGGCTCCTTGCAGTAGCATTGGTTTATCTTGTATC  246

seq1  CAATTCAAAACTGCCCATATCCTGCTGGCTGTACGGCTCAGCGATTAAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAAAACTGCCCATATCCTGCTGGCTGTACGGCTCAGCGATTAAGA  296

seq1  GCATTTGCTGCTCTTGCACAAGGCCGAGGTTCAACACCCACATGGTGCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCTGCTCTTGCACAAGGCCGAGGTTCAACACCCACATGGTGCCT  346

seq1  CACCGTCATCCATAATTCTAGTTGCAGGGGATCCAGAAGCACCGGGCGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTCATCCATAATTCTAGTTGCAGGGGATCCAGAAGCACCGGGCGTG  396

seq1  CACATGTACAACACTCACATATATATTCTGAAATGGTACCCATCCGGGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTACAACACTCACATATATATTCTGAAATGGTACCCATCCGGGGG  446

seq1  TCCCAGTACTCACTGGATGTGCTTCCACAGTTCTTCTTTTGCTTGGATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTACTCACTGGATGTGCTTCCACAGTTCTTCTTTTGCTTGGATGT  496

seq1  CAGGACTTCTTCTGTAAGCAAAGGAGACAAAATTCACCCCTACAATGCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTCTTCTGTAAGCAAAGGAGACAAAATTCACCCCTACAATGCAT  546

seq1  GCCATTCACAAACCTTGAGTGACCTGCAATACTTTTGTGAGGTCTCACTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCACAAACCTTGAGTGACCTGCAATACTTTTGTGAGGTCTCACTT  596

seq1  GCCACCCAGCTGCTGATGAGGAGCCATCACAATTATCAGTGAAAAGGTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCAGCTGCTGATGAGGAGCCATCACAATTATCAGTGAAAAGGTAG  646

seq1  CAGGTTACTTCACTACTGGCAAGCGAGACTCACATGAATGTACAAAAATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTACTTCACTACTGGCAAGCGAGACTCACATGAATGTACAAAAATG  696

seq1  GAAATGAGTCATCACCAGAGGTTCATTTATGAAAGAGCCTGGAAGCCGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGTCATCACCAGAGGTTCATTTATGAAAGAGCCTGGAAGCCGGG  746

seq1  CTTGGTGACAGACCCATATTCTCAGCACTTGAGAGGCAGAGGCAGGGGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGACAGACCCATATTCTCAGCACTTGAGAGGCAGAGGCAGGGGTC  796

seq1  TCACCACAGGTTTGAAGCCAGCCTAGCCAGCTGGTGTTAAATAGCAAGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAGGTTTGAAGCCAGCCTAGCCAGCTGGTGTTAAATAGCAAGTG  846

seq1  ACGTAGGGGCTTTGGTTCCTCGGCTTACTATCTACTGTTTCGTGGCATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGGGCTTTGGTTCCTCGGCTTACTATCTACTGTTTCGTGGCATTT  896

seq1  ATTTATGTGTGCACATGTGTGCATATCACTGTGCACTCAGGACAGTCTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTGTGCACATGTGTGCATATCACTGTGCACTCAGGACAGTCTGC  946

seq1  AGCACTCAGCTCTCTCCCTTCACCACGCTGGTCCCAAGGACTCAGTTCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAGCTCTCTCCCTTCACCACGCTGGTCCCAAGGACTCAGTTCCT  996

seq1  AGGCAAGGCAGTAGGTACCCCTAACCTGCCGAGCCATTTCACCAACTGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGCAGTAGGTACCCCTAACCTGCCGAGCCATTTCACCAACTGCC  1046

seq1  CGCTAGTTTTAAGCAGAAGAGAATTC  1073
      ||||||||||||||||||||||||||
seq2  CGCTAGTTTTAAGCAGAAGAGAATTC  1072