BAC Information

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BAC

Clone NameB6Ng01-324K01
Chromosome18 (Build37)
Map Location 44,591,540 - 44,717,361
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
Downstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324K01.bB6Ng01-324K01.g
ACCGA112891GA112892
length667965
definitionB6Ng01-324K01.b B6Ng01-324K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,591,540 - 44,592,206)(44,716,400 - 44,717,361)
sequence
gaattcactcttacattgtcttctgaccaccccagcacagcacattgtgg
catgctcacaaagactagggaagtgtttgaatcaattatctcttttactg
gaatatctgtagaataaagaaaaatctgcctaaattcagatcagcatgca
ctgacatggaagagaatataagaacccagatgcccctcaacagaggaatg
gatacaaaaaatgtggtacatttacacaatggagtactactcagctttta
aaaagaatgaatttatgaaattactagccaaatggttggacctggagggc
attatcctgagtgaggtaacccaatcacaaaagaactcaaatgatatgta
ctcactgataagtggatattagaccagaaacttagaatgcccaagatata
agttacaatttgcaaaacacatgaaactcaagaagaacgaagaccaaagt
gtggacactttgccccttcttagaattgggaacaaacacccatggaagga
gttacagagacaaagtttggagctgagacaaaaggatggaccatctagag
atatccagggatccatcccataatcagcctccaaacgctgacaccattgc
atacactagcaagattttgctgaaaggaccctgatatagctatctcttgt
gagactatgcccgggcc
gaattccaatagagatggctttgtgctgtggggaacaaggaaaggaaaac
agaatgcagcaattaaggaggagatatctagaagggttttactgttcgcg
gatagaagtggcatgggagaatacggaggttagcaccacagtatagaaga
cagactgcgtgacactacttaccagagcgccagatcaaattttaattacg
agatgcctagagaggaaggaagccagatgttggcagaggtttagccatcc
ctgcaaagaacagacttgggagcaaagagaaaatactcatttagccaaca
gttatggcagagtggtttgtgacattgtttctttcagatgtccttcctgc
agagaccctcatgggtaagttgtctgtcctggggcctcccctctccatgc
ttgcagtcatcttctggtttctaaaatctccattgcccgccccccccccc
ccatgactttggtgtttgaattggacatttaaccatttaaaaatcttctg
caaaatgtccgaaatcctgtgacctaggctacttgtttctgaaccagacc
agcagatagggagagtctttgagcatcaagaccacatgcagaagggtttt
ccacagtgtatccccgtgcacattctgactcagcagcttctcttcctcct
cagtgtccattcttaggccacctcctgtgtggttctctttgtctacccag
tgcatggtttgatttgaaagccccacctctgcctctttctatgctggcaa
tgaaagacccttgtggggagacccccactcaagtcccaagactgtgtgta
tccaaggaatcacgaaagaccatcttgatgcaaacacacgaggcagttta
atgatggagctccgggctgacacgtatctcttcgcaagagacaagaggag
tcgacccttaatgctcaaagttagggatttatataggaaaagagtgttgg
ggcgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44591540_44592206
seq2: B6Ng01-324K01.b_48_714

seq1  GAATTCACTCTTACATTGTCTTCTGACCACCCCAGCACAGCACATTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTACATTGTCTTCTGACCACCCCAGCACAGCACATTGTGG  50

seq1  CATGCTCACAAAGACTAGGGAAGTGTTTGAATCAATTATCTCTTTTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCACAAAGACTAGGGAAGTGTTTGAATCAATTATCTCTTTTACTG  100

seq1  GAATATCTGTAGAATAAAGAAAAATCTGCCTAAATTCAGATCAGCATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTGTAGAATAAAGAAAAATCTGCCTAAATTCAGATCAGCATGCA  150

seq1  CTGACATGGAAGAGAATATAAGAACCCAGATGCCCCTCAACAGAGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGGAAGAGAATATAAGAACCCAGATGCCCCTCAACAGAGGAATG  200

seq1  GATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTTTTA  250

seq1  AAAAGAATGAATTTATGAAATTACTAGCCAAATGGTTGGACCTGGAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGAATTTATGAAATTACTAGCCAAATGGTTGGACCTGGAGGGC  300

seq1  ATTATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAAATGATATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAAATGATATGTA  350

seq1  CTCACTGATAAGTGGATATTAGACCAGAAACTTAGAATGCCCAAGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGATAAGTGGATATTAGACCAGAAACTTAGAATGCCCAAGATATA  400

seq1  AGTTACAATTTGCAAAACACATGAAACTCAAGAAGAACGAAGACCAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAATTTGCAAAACACATGAAACTCAAGAAGAACGAAGACCAAAGT  450

seq1  GTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAACACCCATGGAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAACACCCATGGAAGGA  500

seq1  GTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAG  550

seq1  ATATCCAGGGATCCATCCCATAATCAGCCTCCAAACGCTGACACCATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGGGATCCATCCCATAATCAGCCTCCAAACGCTGACACCATTGC  600

seq1  ATACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTATCTCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTATCTCTTGT  650

seq1  GAGACTATGCCCGGGCC  667
      |||||||||||||||||
seq2  GAGACTATGCCCGGGCC  667

seq1: chr18_44716400_44717361
seq2: B6Ng01-324K01.g_67_1031 (reverse)

seq1  CCCCCCCCCCCCG-CCCAACACTCTTTTCCTATATAAATCCCTAACTTTG  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCGCCCCAACACTCTTTTCCTATATAAATCCCTAACTTTG  50

seq1  AGCCTT-AGGGTCGACTCCTCTTGTCTCCTGCG-AGAGATACGTGTCAGC  97
      ||| || ||||||||||||||||||||| |||| ||||||||||||||||
seq2  AGCATTAAGGGTCGACTCCTCTTGTCTCTTGCGAAGAGATACGTGTCAGC  100

seq1  CCGGAGCTCCATCATTAAACTGCCTCGTGTGTTTGCATCAAGATGGTCTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCTCCATCATTAAACTGCCTCGTGTGTTTGCATCAAGATGGTCTT  150

seq1  TCGTGATTCCTTGGATACACACAGTCTTGGGACTTGAGTGGGGGTCTCCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATTCCTTGGATACACACAGTCTTGGGACTTGAGTGGGGGTCTCCC  200

seq1  CACAAGGGTCTTTCATTGCCAGCATAGAAAGAGGCAGAGGTGGGGCTTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGTCTTTCATTGCCAGCATAGAAAGAGGCAGAGGTGGGGCTTTC  250

seq1  AAATCAAACCATGCACTGGGTAGACAAAGAGAACCACACAGGAGGTGGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAACCATGCACTGGGTAGACAAAGAGAACCACACAGGAGGTGGCC  300

seq1  TAAGAATGGACACTGAGGAGGAAGAGAAGCTGCTGAGTCAGAATGTGCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGGACACTGAGGAGGAAGAGAAGCTGCTGAGTCAGAATGTGCAC  350

seq1  GGGGATACACTGTGGAAAACCCTTCTGCATGTGGTCTTGATGCTCAAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATACACTGTGGAAAACCCTTCTGCATGTGGTCTTGATGCTCAAAGA  400

seq1  CTCTCCCTATCTGCTGGTCTGGTTCAGAAACAAGTAGCCTAGGTCACAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTATCTGCTGGTCTGGTTCAGAAACAAGTAGCCTAGGTCACAGG  450

seq1  ATTTCGGACATTTTGCAGAAGATTTTTAAATGGTTAAATGTCCAATTCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGGACATTTTGCAGAAGATTTTTAAATGGTTAAATGTCCAATTCAA  500

seq1  ACACCAAAGTCATGGGGGGGGGGGGGCGGGCAATGGAGATTTTAGAAACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAGTCATGGGGGGGGGGGGGCGGGCAATGGAGATTTTAGAAACC  550

seq1  AGAAGATGACTGCAAGCATGGAGAGGGGAGGCCCCAGGACAGACAACTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGACTGCAAGCATGGAGAGGGGAGGCCCCAGGACAGACAACTTA  600

seq1  CCCATGAGGGTCTCTGCAGGAAGGACATCTGAAAGAAACAATGTCACAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGGGTCTCTGCAGGAAGGACATCTGAAAGAAACAATGTCACAAA  650

seq1  CCACTCTGCCATAACTGTTGGCTAAATGAGTATTTTCTCTTTGCTCCCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGCCATAACTGTTGGCTAAATGAGTATTTTCTCTTTGCTCCCAA  700

seq1  GTCTGTTCTTTGCAGGGATGGCTAAACCTCTGCCAACATCTGGCTTCCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCTTTGCAGGGATGGCTAAACCTCTGCCAACATCTGGCTTCCTT  750

seq1  CCTCTCTAGGCATCTCGTAATTAAAATTTGATCTGGCGCTCTGGTAAGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAGGCATCTCGTAATTAAAATTTGATCTGGCGCTCTGGTAAGTA  800

seq1  GTGTCACGCAGTCTGTCTTCTATACTGTGGTGCTAACCTCCGTATTCTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACGCAGTCTGTCTTCTATACTGTGGTGCTAACCTCCGTATTCTCC  850

seq1  CATGCCACTTCTATCCGCGAACAGTAAAACCCTTCTAGATATCTCCTCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACTTCTATCCGCGAACAGTAAAACCCTTCTAGATATCTCCTCCT  900

seq1  TAATTGCTGCATTCTGTTTTCCTTTCCTTGTTCCCCACAGCACAAAGCCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTGCATTCTGTTTTCCTTTCCTTGTTCCCCACAGCACAAAGCCA  950

seq1  TCTCTATTGGAATTC  962
      |||||||||||||||
seq2  TCTCTATTGGAATTC  965