BAC Information

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BAC

Clone NameB6Ng01-324N09
Chromosome18 (Build37)
Map Location 33,769,006 - 33,925,363
singlet/doubletdoublet
Overlap geneLOC666281, LOC100041258
Upstream geneLOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610
Downstream geneEpb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324N09.bB6Ng01-324N09.g
ACCGA113050GA113051
length1,061966
definitionB6Ng01-324N09.b B6Ng01-324N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,924,811 - 33,925,363)(33,769,006 - 33,769,841)
sequence
gaattcttgctctctccacagtgtgaacggcagattcattatggcagagt
cattttttacttttgccgttgtagatggtgcataccattctggtgagctg
gtagtacaaaggtgaccagagcacagataaaagccacttaaatagtcact
tcctttttccatgctccttctggtgactcctaaaccagggagacaaaaaa
gatttactccaagcacctctaacatttatacaccaggatttaatggaaca
aacttgatagaaaatttccttttaacagtgaatattagtagggacatgga
ggcggttcagttagtgtcttagagtttctattgttctgatcaaaagcaac
tcagggaggaaatagtttatttcattttatacttcaggtaactgtccatc
atccagggaagtaagggcaggaactctaggcagtagctgaagcagaaccc
acagaggtgtgcggctgcttactgccttgttctttatggcttgctcagcc
tgcttggcttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctctctctct
ctctttctctctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttcttccttccttccttcct
tccttccttcctctctctctttctttccttctctcttttttaaaagattt
atttacttttatatgagtacactgttgctctcttcagacacaccagaaga
gggcatcagatcccattacagatggttgtgagccaccatgtggttgctgg
gatttgaactcaggacctctggaagaacagtcagtgctcttaccactgag
ccatctctccagcccaataagcctgctttcttagagtctccgggaccagc
agcccaggggtgatgctgaccacagtgagcatggcccttctgcataaagc
atcaataaagaaaaatgcacacaggcttgctacagtcacttgggttgggg
cagctgagttc
gaattcacatgaccatgctgtcatggccattataaactaggtcatgggtt
ttccccttaccacactcagagctcactctctgtgtccttgctcacggtac
cctcccttgatgcagattttccaatctcatccctgttttcctctcccaac
ttttcagatactctttaacacagttaacagatggggactaaattactcat
ctctattggataagcatttcttttgctcaaactcaaatcaacatgatgag
aaaccgctatcaatagcaatattctattctcattttatttcatgatagat
ttttacacctgctgaaaaacttcaaaatattaactatgtcatctacagaa
cattcttcctaagcactaaatatacattcctctcagcatcccatggtatt
tcccctaagacaggtcatataatgggacacaaggcaaggcttaacgacta
taggaaaattgaaattattttttgtataccatctgaccacagcaggataa
catgtaaaaccaacagcactggaaactgctaaacacaagcaaatgtatgg
agactgggtatcttgctgtgaaatagtgaatgggtcattgtgactgaata
taagcaaatgtattaaatagtgaatgggtcattgtgaattttttttaatt
tttctaggatcaaatcaaaatgaaaacacattataccaaaacctttgtga
tacaattaaaacaatcctaaaagagaagtttaccactatgagggggtctt
catttaaaaataaaataaaataaaatagaaatagaatagaaatagagcaa
tctcaattaatgatctataaaaatgactcctgaaagaattctcaagtaaa
taatattgggtcttggaaaaatagaagagaaaaaaaaatccaaaacaata
aaaaagctaatgtactaaatggaaataatattgtcaaaaattaatggaat
ggtaataaaaatacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_33924811_33925363
seq2: B6Ng01-324N09.b_49_603 (reverse)

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGCC  50

seq1  AAGCAGGCTGAGCAAGCCATAAAGAACAAGGCAGTAAGCAGCCGCACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCTGAGCAAGCCATAAAGAACAAGGCAGTAAGCAGCCGCACACC  100

seq1  TCTGTGGGTTCTGCTTCAGCTACTGCCTAGAGTTCCTGCCCTTACTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGTTCTGCTTCAGCTACTGCCTAGAGTTCCTGCCCTTACTTCCC  150

seq1  TGGATGATGGACAGTTACCTGAAGTATAAAATGAAATAAACTATTTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATGGACAGTTACCTGAAGTATAAAATGAAATAAACTATTTCCTC  200

seq1  CCTGAGTTGCTTTTGATCAGAACAATAGAAACTCTAAGACACTAACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTGCTTTTGATCAGAACAATAGAAACTCTAAGACACTAACTGAA  250

seq1  CCGCCTCCATGTCCCTACTAATATTCACTGTTAAAAGGAAATTTTCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCCATGTCCCTACTAATATTCACTGTTAAAAGGAAATTTTCTATC  300

seq1  AAGTTTGTTCCATTAAATCCTGGTGTATAAATGTTAGAGGTGCTTGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTTCCATTAAATCCTGGTGTATAAATGTTAGAGGTGCTTGGAGT  350

seq1  AAATCTTTTTTGTCTCCCTGGTTTAGGAGTCACCAGAAGGAGCATGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTTTGTCTCCCTGGTTTAGGAGTCACCAGAAGGAGCATGGAAA  400

seq1  AAGGAAGTGACTATTTAAGTGGCTTTTATCTGTGCTCTGGTCACCTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTGACTATTTAAGTGGCTTTTATCTGTGCTCTGGTCACCTTTGT  450

seq1  ACTACCAGCTCACCAGAATGGTATGCACCATCTACAACGGCAAAAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAGCTCACCAGAATGGTATGCACCATCTACAACGGCAAAAGTAAA  500

seq1  AAATGACTCTGCCAT-GTGAATCTGCCGTTCACACTGTGGAGAGAGC-AG  548
      |||||||||||||||  |||||||||||||||||||||||||||||| ||
seq2  AAATGACTCTGCCATAATGAATCTGCCGTTCACACTGTGGAGAGAGCAAG  550

seq1  AATTC  553
      |||||
seq2  AATTC  555

seq1: chr18_33769006_33769841
seq2: B6Ng01-324N09.g_69_903

seq1  GAATTCACATGACCATGCTGTCATGGCCATTATAAACTAGGTCATGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGACCATGCTGTCATGGCCATTATAAACTAGGTCATGGGTT  50

seq1  TTCCCCTTACCACACTCAGAGCTCACTCTCTGTGTCCTTGCTCACGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTACCACACTCAGAGCTCACTCTCTGTGTCCTTGCTCACGGTAC  100

seq1  CCTCCCTTGATGCAGATTTTCCAATCTCATCCCTGTTTTCCTCTCCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTGATGCAGATTTTCCAATCTCATCCCTGTTTTCCTCTCCCAAC  150

seq1  TTTTCAGATACTCTTTAACACAGTTAACAGATGGGGACTAAATTACTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGATACTCTTTAACACAGTTAACAGATGGGGACTAAATTACTCAT  200

seq1  CTCTATTGGATAAGCATTTCTTTTGCTCAAACTCAAATCAACATGATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTGGATAAGCATTTCTTTTGCTCAAACTCAAATCAACATGATGAG  250

seq1  AAACCGCTATCAATAGCAATATTCTATTCTCATTTTATTTCATGATAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGCTATCAATAGCAATATTCTATTCTCATTTTATTTCATGATAGAT  300

seq1  TTTTACACCTGCTGAAAAACTTCAAAATATTAACTATGTCATCTACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACCTGCTGAAAAACTTCAAAATATTAACTATGTCATCTACAGAA  350

seq1  CATTCTTCCTAAGCACTAAATATACATTCCTCTCAGCATCCCATGGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCCTAAGCACTAAATATACATTCCTCTCAGCATCCCATGGTATT  400

seq1  TCCCCTAAGACAGGTCATATAATGGGACACAAGGCAAGGCTTAACGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAAGACAGGTCATATAATGGGACACAAGGCAAGGCTTAACGACTA  450

seq1  TAGGAAAATTGAAATTATTTTTTGTATACCATCTGACCACAGCAGGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAATTGAAATTATTTTTTGTATACCATCTGACCACAGCAGGATAA  500

seq1  CATGTAAAACCAACAGCACTGGAAACTGCTAAACACAAGCAAATGTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAACCAACAGCACTGGAAACTGCTAAACACAAGCAAATGTATGG  550

seq1  AGACTGGGTATCTTGCTGTGAAATAGTGAATGGGTCATTGTGACTGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGTATCTTGCTGTGAAATAGTGAATGGGTCATTGTGACTGAATA  600

seq1  TAAGCAAATGTATTAAATAGTGAATGGGTCATTGTGAATTTTTTTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAATGTATTAAATAGTGAATGGGTCATTGTGAATTTTTTTTAATT  650

seq1  TTTCTAGGATCAAATCAAAATGAAAACACATTATACCAAAACCTTTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGATCAAATCAAAATGAAAACACATTATACCAAAACCTTTGTGA  700

seq1  TACAATTAAAACAATCCTAAAAGAGAAGTTTACCACTATGAGGGGGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTAAAACAATCCTAAAAGAGAAGTTTACCACTATGAGGGGGTCTT  750

seq1  CATTTAAAAATAAAATAAAATAAAATAGAAATAGAAATAGAAATAGAGCA  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATTTAAAAATAAAATAAAATAAAATAGAAATAG-AATAGAAATAGAGCA  799

seq1  ATCTCAATTAATGATCTATAAAAATGACTCCTGAAA  836
      ||||||||||||||||||||||||||||||||||||
seq2  ATCTCAATTAATGATCTATAAAAATGACTCCTGAAA  835