BAC Information

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BAC

Clone NameB6Ng01-326K08
Chromosome18 (Build37)
Map Location 52,102,991 - 52,114,421
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042385, Prr16, EG240289
Downstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326K08.bB6Ng01-326K08.g
ACCGA114404GA114405
length1,2391,096
definitionB6Ng01-326K08.b B6Ng01-326K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,113,164 - 52,114,421)(52,102,991 - 52,103,772)
sequence
gaattcaggcggcacaccatagaaacctattacactccattccatttaca
agcaaagtattatatttcctaggaaatatattatggcataacctgattgg
atagtttggatactctaagttttttagggctaataatttgaagattagca
ggtttgaaaagtagcaggaaagggtgaaagcactctgaatggagttcaag
taccatgtttgtcatttgtttcctcgatgaacttgaaaacattatttcag
cttcatgtgctttcatttctatctatgaaatgggattagtgctatcatag
tctgtcatggacatttaaaataaaaaaaaaacagttttaggatgcttaga
gtagtgcttggcatatagtattcagtagaaaaattgtagttatagcccat
gctttgtttaacaattctaaggcaagcagaaggacccggaacatttgtaa
cattgcatgttctttgtgacagaaatctggacagaatttagctggcttct
tacaaaggctataaacatggtgtttgcccaggtggcactttcatctccca
gagtgactgggaaatggccttctctcaagctcacacggtgattggtagaa
ctcaactttttgaaataagtctgaaagacggcttacctgtcagcccacag
ttgtcctttgtttcttgctgtatggcactctgtaatgtgacagattgcat
tattatacacatcaggaaagaagtctaacaaagagaatattatgttacta
tgtaccaatgtaggaaaccatctgttccctttcactgtattctgttagtt
taaagcaaactacaggctctgaccacactcggcagaaaaatattactcac
agttattttagcttcacactccaaccaagagcaacttaagggaggaaaag
ttttatctggcttacaattctgttacagcccatctctgatgggaaatcag
ggcagtaactcaaacagctagaagtatagctacagtcaaaatcagaaaca
ctggatccttatcggctacttgcacctaaatttcttctgtctacactgtt
agacccactgcctagggaatggtactgcccatgatgctttgtccttctcc
catcagtgaacagagatgccctatagaacataacatacgaaccaagtcca
tcttagatcaccttcaatggagctttccgttttcctggattttcttatta
cgttcaatgtttcgccctttacaaattttcccttcaaaa

gaattcctaagcccgataaacagcttcaatgaagtagctggatataaaat
taactcaaacaagtcaatggcctttctatacacaaaggataaacagactg
agaaagaaattagggaaacaacacccttctcaatagtcacaaataatata
aaataccttggcatgactctaactaaggaagtgaaagatctgtatgataa
aaacttcaagtctctgaagaaagaaattaaagaagatctcagaagatgga
aagatctcccatgctcatggattggcaggatcaacattgtaaaaatggct
atcttgccaaaagcaatctacagattcaatgcaatccccatcaaaatccc
aactcaattcttcaacgaattagaaagagcaatctgcaaattcatctgga
ataacaaaaaacctagaatagacaaaactcttctcaaggataaaagaacc
tctggtggaatcactatgcctgacctaaagctgtactacagagcaattgt
gataaaaacttcatggtactggtatagcaacagacaagtagaccaatgga
acagaattgaagacccagaaatgaacgcacacacctatggtcacttgatc
tttgacaagggagctataaccatccattggaaaaaagacagcattttcaa
caaatggtggtggcacaactggcggttatcatgtagaagaatgcgaattg
atccattcctatctccttgtactaaggtcaaatctaagtggattaaggaa
ctccacataaaaccagagacactgaaacttatagaggagaaagtagggga
aagcctcgaagatgtgggcctttctagcttctgagattctcaatcagcca
atccatttggaatctattctccacccacattttcaaagtgaacaacagtt
tcttctagggtctctatgaaattcctttatttcttctttctccttaaaat
atgaccagggcctttttctttcctggatatacatatcaatgtatttaagt
gtggtttactacatataatatcacttaatggatgtggacatagaactata
taaagcagggaggagttatttttatgactatcaattggatgagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52113164_52114421
seq2: B6Ng01-326K08.b_52_1290 (reverse)

seq1  TTTTGAAAGGGAAATTTGTAAAGGCGAAAACATTTGAAATGTAAATAAAG  50
      ||||||| || |||||||||||||   |||||||   || ||||   |||
seq2  TTTTGAAGGGAAAATTTGTAAAGGGCGAAACATT--GAACGTAA--TAAG  46

seq1  AAAATATCCAAGAAAAAAACGAAAAAGCTTCAATTGA--GTGATTCTTAA  98
      |||  ||||| |   ||||||  ||||| || |||||  |||||   |||
seq2  AAA--ATCCAGG---AAAACG-GAAAGC-TCCATTGAAGGTGAT--CTAA  87

seq1  GATTGACTTGGTCTGTATG-TATG-TCTATAGGGGCATCTTCCTTGTTCA  146
      ||| ||||||||  ||||| |||| |||||| ||||||||    ||||||
seq2  GATGGACTTGGTTCGTATGTTATGTTCTATA-GGGCATCT---CTGTTCA  133

seq1  CTGATGGGAGAGGACCAAAGCCATCATGGGCAGTACCATTCCCTAGGCAG  196
      ||||||||||| |  ||||| |||||||||||||||||||||||||||||
seq2  CTGATGGGAGAAGGACAAAG-CATCATGGGCAGTACCATTCCCTAGGCAG  182

seq1  TGGGTCTTAAACAGTGTAAGACAGAAGAAATTTAGGTGCAAGTAGCCGAT  246
      |||||||  |||||||| ||||||||||||||||||||||||||||||||
seq2  TGGGTCT--AACAGTGT-AGACAGAAGAAATTTAGGTGCAAGTAGCCGAT  229

seq1  AAGGATCCAGTTGTTTCTGATTTTGACTGTAGCTATACCTTCTAGCTGTT  296
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  AAGGATCCAG-TGTTTCTGATTTTGACTGTAGCTATA-CTTCTAGCTGTT  277

seq1  TGAGTTACTGCCCTGATTTCCCATCAGAGATGGGCTGTAACAGAATTGTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACTGCCCTGATTTCCCATCAGAGATGGGCTGTAACAGAATTGTA  327

seq1  AGCCAGATAAAACTTTTCCTCCCTTAAGTTGCTCTTGGTTGGAGTGTGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATAAAACTTTTCCTCCCTTAAGTTGCTCTTGGTTGGAGTGTGAA  377

seq1  GCTAAAATAACTGTGAGTAATATTTTTCTGCCGAGTGTGGTCAGAGCCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATAACTGTGAGTAATATTTTTCTGCCGAGTGTGGTCAGAGCCTG  427

seq1  TAGTTTGCTTTAAACTAACAGAATACAGTGAAAGGGAACAGATGGTTTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGCTTTAAACTAACAGAATACAGTGAAAGGGAACAGATGGTTTCC  477

seq1  TACATTGGTACATAGTAACATAATATTCTCTTTGTTAGACTTCTTTCCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGTACATAGTAACATAATATTCTCTTTGTTAGACTTCTTTCCTG  527

seq1  ATGTGTATAATAATGCAATCTGTCACATTACAGAGTGCCATACAGCAAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATAATAATGCAATCTGTCACATTACAGAGTGCCATACAGCAAGA  577

seq1  AACAAAGGACAACTGTGGGCTGACAGGTAAGCCGTCTTTCAGACTTATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGACAACTGTGGGCTGACAGGTAAGCCGTCTTTCAGACTTATTT  627

seq1  CAAAAAGTTGAGTTCTACCAATCACCGTGTGAGCTTGAGAGAAGGCCATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTTGAGTTCTACCAATCACCGTGTGAGCTTGAGAGAAGGCCATT  677

seq1  TCCCAGTCACTCTGGGAGATGAAAGTGCCACCTGGGCAAACACCATGTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCACTCTGGGAGATGAAAGTGCCACCTGGGCAAACACCATGTTT  727

seq1  ATAGCCTTTGTAAGAAGCCAGCTAAATTCTGTCCAGATTTCTGTCACAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTTTGTAAGAAGCCAGCTAAATTCTGTCCAGATTTCTGTCACAAA  777

seq1  GAACATGCAATGTTACAAATGTTCCGGGTCCTTCTGCTTGCCTTAGAATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGCAATGTTACAAATGTTCCGGGTCCTTCTGCTTGCCTTAGAATT  827

seq1  GTTAAACAAAGCATGGGCTATAACTACAATTTTTCTACTGAATACTATAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACAAAGCATGGGCTATAACTACAATTTTTCTACTGAATACTATAT  877

seq1  GCCAAGCACTACTCTAAGCATCCTAAAACTGTTTTTTTTTTATTTTAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCACTACTCTAAGCATCCTAAAACTGTTTTTTTTTTATTTTAAAT  927

seq1  GTCCATGACAGACTATGATAGCACTAATCCCATTTCATAGATAGAAATGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGACAGACTATGATAGCACTAATCCCATTTCATAGATAGAAATGA  977

seq1  AAGCACATGAAGCTGAAATAATGTTTTCAAGTTCATCGAGGAAACAAATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATGAAGCTGAAATAATGTTTTCAAGTTCATCGAGGAAACAAATG  1027

seq1  ACAAACATGGTACTTGAACTCCATTCAGAGTGCTTTCACCCTTTCCTGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATGGTACTTGAACTCCATTCAGAGTGCTTTCACCCTTTCCTGCT  1077

seq1  ACTTTTCAAACCTGCTAATCTTCAAATTATTAGCCCTAAAAAACTTAGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAAACCTGCTAATCTTCAAATTATTAGCCCTAAAAAACTTAGAG  1127

seq1  TATCCAAACTATCCAATCAGGTTATGCCATAATATATTTCCTAGGAAATA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAACTATCCAATCAGGTTATGCCATAATATATTTCCTAGGAAATA  1177

seq1  TAATACTTTGCTTGTAAATGGAATGGAGTGTAATAGGTTTCTATGGTGTG  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTTGCTTGTAAATGGAATGGAGTGTAATAGGTTTCTATGGTGTG  1227

seq1  CCGCCTGAATTC  1258
      ||||||||||||
seq2  CCGCCTGAATTC  1239


seq1: chr18_52102991_52103772
seq2: B6Ng01-326K08.g_386_1159

seq1  GATTCAATGCAATCCCCATCAAAATCCCAACTCAATTCTTCAACGAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAATGCAATCCCCATCAAAATCCCAACTCAATTCTTCAACGAATTA  50

seq1  GAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGAATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGAATAGA  100

seq1  CAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACTATGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACTATGCCTG  150

seq1  ACCTAAAGCTGTACTACAGAGCAATTGTGATAAAAACTTCATGGTACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGCTGTACTACAGAGCAATTGTGATAAAAACTTCATGGTACTGG  200

seq1  TATAGCAACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAAAT  250

seq1  GAACGCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTATAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTATAACCA  300

seq1  TCCATTGGAAAAAAGACAGCATTTTCAACAAATGGTGGTGGCACAACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGAAAAAAGACAGCATTTTCAACAAATGGTGGTGGCACAACTGG  350

seq1  CGGTTATCATGTAGAAGAATGCGAATTGATCCATTCCTATCTCCTTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTATCATGTAGAAGAATGCGAATTGATCCATTCCTATCTCCTTGTAC  400

seq1  TAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACAC  450

seq1  TGAAACTTATAGAGGAGAAAGTAGGGGAAAGCCTCGAAGATGTGGGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTATAGAGGAGAAAGTAGGGGAAAGCCTCGAAGATGTGGGCCTT  500

seq1  TCTAGCTTCTGAGATTCTCAATCAGCCAATCCATTTGGAATCTATTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTTCTGAGATTCTCAATCAGCCAATCCATTTGGAATCTATTCTCC  550

seq1  ACCCACATTTTCAAAGTGAACAACAGTTTCTTCTAGGGTCTCTATGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATTTTCAAAGTGAACAACAGTTTCTTCTAGGGTCTCTATGAAAT  600

seq1  TCC-TTATTTCTTCTTTCTCCTTAAAAATATGACCAGG--CCTTTTCTTT  647
      ||| ||||||||||||||||||| ||||||||||||||  | ||||||||
seq2  TCCTTTATTTCTTCTTTCTCCTT-AAAATATGACCAGGGCCTTTTTCTTT  649

seq1  CCTGGATAATACATATCAATGTATTTAAGTGTGGTTTTACTACATAATAT  697
      ||||||| |||||||||||||||||||||||||| |||||||||||  ||
seq2  CCTGGAT-ATACATATCAATGTATTTAAGTGTGG-TTTACTACATATAAT  697

seq1  ATCAACCTTAATGGATGTGGACATAGAACTATATAAAGCAGGGAGAAGTT  747
      ||||  ||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCA--CTTAATGGATGTGGACATAGAACTATATAAAGCAGGGAGGAGTT  745

seq1  ATTTTTATTGGACTATCCAAATTGAAATTGAGACT  782
      ||||||||  |||||||  ||||| |  |||||||
seq2  ATTTTTAT--GACTATC--AATTGGA--TGAGACT  774


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