BAC Information

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BAC

Clone NameB6Ng01-327C24
Chromosome18 (Build37)
Map Location 43,414,840 - 43,546,224
singlet/doubletdoublet
Overlap geneStk32a, Dpysl3
Upstream geneLars, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594
Downstream geneLOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327C24.bB6Ng01-327C24.g
ACCGA114801GA114802
length2991,132
definitionB6Ng01-327C24.b B6Ng01-327C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,414,840 - 43,415,138)(43,545,079 - 43,546,224)
sequence
atcaatagctcttgaaattcataaagagttagggagttgggtgtggtggt
tcatactttaaaataaattgaaaaaaaaattgaggttgtaatatttcacc
acctctcccttctcttttctccttccaaaccctagtatgtcccttgttct
ctttaaaatctatggcctctttttttctttaattgattgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtggtgtattacaacctgcccaaactgtgtta
taaaacttcttattgcaatgaataccattacagaaaatcataatcaacg
gaattcaaagacacattcctcatggcttactttttgtatgcctgtgcata
tgtcatagaaatactagataataagaactgaaggataagttgtcccatga
tgataatacatcttacacatcctataagagtacttaactctacactgagc
tactatagccacagcccagactttatttgaagagaagcatcccttagaga
agtaaagagccccagttgtggccacagtgtaagaggcccctggaaggcag
tactcttgggtctgcccttgcttcttatttatcagagactttaggaaacc
tcagaatctgcactgacaaacagatctttgcactccctgatccccaaggt
ccctgctaatgcaaatgacatcaggagcaagcattttcctgttctgttcc
acattcacatagaagagttataaaagctcttctctcccatgaagaaagtg
taagcagggggtatgcatgagagatggcatcagctcagcaggaccagcca
acggactctggttgctttttacctttaagatctttgcctttttcttacct
aaggagtagacttagctaatagcctataggagagggcagtggagtaataa
tgagggatagacccttttctttaagcagagctttaggtcattgaaaatga
gcattattaaagtggtggcatgattcatttgctgccactgctatgtctcc
ttcagtgaaggctgccattgataaaggcacaaaagcgacaattgcccccc
aaatctagactaggcaaacaaacaagcaaagagaaaacagctctgagact
gtgctcgctagagcttttttggctgcccgtactgatattttaaatatgat
ggctgctgtccaatgggaaatagctctcttctcaaaagctcagtaacacc
atggactctgtgtgagggtatcaggagcatcctgcacctaaatctttgat
cagcacatattaggtcctctgttaaggaaagaaaactccataagcaatgc
tgaatgaataagatacattaacatgacctgcagcataactcatggggaga
tgacctgaaagatttgcttgctctgaacactagcttccttcactgacact
tttgaagaatattccattagacttcagataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_43414840_43415138
seq2: B6Ng01-327C24.b_52_350

seq1  ATCAATAGCTCTTGAAATTCATAAAGAGTTAGGGAGTTGGGTGTGGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAGCTCTTGAAATTCATAAAGAGTTAGGGAGTTGGGTGTGGTGGT  50

seq1  TCATACTTTAAAATAAATTGAAAAAAAAATTGAGGTTGTAATATTTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTTAAAATAAATTGAAAAAAAAATTGAGGTTGTAATATTTCACC  100

seq1  ACCTCTCCCTTCTCTTTTCTCCTTCCAAACCCTAGTATGTCCCTTGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCCTTCTCTTTTCTCCTTCCAAACCCTAGTATGTCCCTTGTTCT  150

seq1  CTTTAAAATCTATGGCCTCTTTTTTTCTTTAATTGATTGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATCTATGGCCTCTTTTTTTCTTTAATTGATTGTGTGTGTGTGT  200

seq1  GTGTGTGTGTGTGTGTGTGTGGTGTATTACAACCTGCCCAGTCTGTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGGTGTATTACAACCTGCCCAAACTGTGTTA  250

seq1  TGAAACTTCTCATTGCAATGAAGACCATTACAGAAAACCATAACCAACG  299
      | |||||||| ||||||||||| |||||||||||||| ||||| |||||
seq2  TAAAACTTCTTATTGCAATGAATACCATTACAGAAAATCATAATCAACG  299

seq1: chr18_43545079_43546224
seq2: B6Ng01-327C24.g_68_1199 (reverse)

seq1  CTTATCTTGAAGTCTTAATGAATATTCTCAAAAGGTGTCAGTGAAAGGGA  50
      |||||| |||||||| |  |||||||||  ||| |||||||||||  |||
seq2  CTTATC-TGAAGTCTAATGGAATATTCTTCAAAAGTGTCAGTGAA--GGA  47

seq1  GGCTAGTGTTCAGGAGCAAAAGCAAATTCTTTCAGGTCATCTTCCCCATT  100
       ||||||||||| ||||  ||||||| |||||||||||||| ||||||| 
seq2  AGCTAGTGTTCA-GAGC--AAGCAAA-TCTTTCAGGTCATC-TCCCCAT-  91

seq1  GAAGTTAATGCTGCAGGTCAATGTTAAATGTATC-TATTCATTCAGCATT  149
        |||| |||||||||||| ||||| |||||||| |||||||||||||||
seq2  -GAGTT-ATGCTGCAGGTC-ATGTT-AATGTATCTTATTCATTCAGCATT  137

seq1  GCTTATGGAGTTTTCTTTTCCTTAAACAGAGGACCTAATATGTGCTGATC  199
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  GCTTATGGAGTTTTC-TTTCCTT-AACAGAGGACCTAATATGTGCTGATC  185

seq1  AAAGATTTAGGTGCAGGATGCTCCCTGATACCCTCACACAGAGTCCATGG  249
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAGATTTAGGTGCAGGATGCT-CCTGATACCCTCACACAGAGTCCATGG  234

seq1  TGTTACTGAGCTTTTGAGAAGAGAGCTATTT-CCATTGGACAGCAGCCAT  298
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTACTGAGCTTTTGAGAAGAGAGCTATTTCCCATTGGACAGCAGCCAT  284

seq1  CATATTTAAAATATCAGTACGGGCAGCCAAAAAAGCTCTAGCGAGCACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAAAATATCAGTACGGGCAGCCAAAAAAGCTCTAGCGAGCACAG  334

seq1  TCTCAGAGCTGTTTTCTCTTTGCTTGTTTGTTTGCCTAGTCTAGATTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGCTGTTTTCTCTTTGCTTGTTTGTTTGCCTAGTCTAGATTTGG  384

seq1  GGGGCAATTGTCGCTTTTGTGCCTTTATCAATGGCAGCCTTCACTGAAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAATTGTCGCTTTTGTGCCTTTATCAATGGCAGCCTTCACTGAAGG  434

seq1  AGACATAGCAGTGGCAGCAAATGAATCATGCCACCACTTTAATAATGCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGCAGTGGCAGCAAATGAATCATGCCACCACTTTAATAATGCTC  484

seq1  ATTTTCAATGACCTAAAGCTCTGCTTAAAGAAAAGGGTCTATCCCTCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATGACCTAAAGCTCTGCTTAAAGAAAAGGGTCTATCCCTCATT  534

seq1  ATTACTCCACTGCCCTCTCCTATAGGCTATTAGCTAAGTCTACTCCTTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCCACTGCCCTCTCCTATAGGCTATTAGCTAAGTCTACTCCTTAG  584

seq1  GTAAGAAAAAGGCAAAGATCTTAAAGGTAAAAAGCAACCAGAGTCCGTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAAAGGCAAAGATCTTAAAGGTAAAAAGCAACCAGAGTCCGTTG  634

seq1  GCTGGTCCTGCTGAGCTGATGCCATCTCTCATGCATACCCCCTGCTTACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCCTGCTGAGCTGATGCCATCTCTCATGCATACCCCCTGCTTACA  684

seq1  CTTTCTTCATGGGAGAGAAGAGCTTTTATAACTCTTCTATGTGAATGTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCATGGGAGAGAAGAGCTTTTATAACTCTTCTATGTGAATGTGG  734

seq1  AACAGAACAGGAAAATGCTTGCTCCTGATGTCATTTGCATTAGCAGGGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACAGGAAAATGCTTGCTCCTGATGTCATTTGCATTAGCAGGGAC  784

seq1  CTTGGGGATCAGGGAGTGCAAAGATCTGTTTGTCAGTGCAGATTCTGAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGATCAGGGAGTGCAAAGATCTGTTTGTCAGTGCAGATTCTGAGG  834

seq1  TTTCCTAAAGTCTCTGATAAATAAGAAGCAAGGGCAGACCCAAGAGTACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAAGTCTCTGATAAATAAGAAGCAAGGGCAGACCCAAGAGTACT  884

seq1  GCCTTCCAGGGGCCTCTTACACTGTGGCCACAACTGGGGCTCTTTACTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCAGGGGCCTCTTACACTGTGGCCACAACTGGGGCTCTTTACTTC  934

seq1  TCTAAGGGATGCTTCTCTTCAAATAAAGTCTGGGCTGTGGCTATAGTAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGGATGCTTCTCTTCAAATAAAGTCTGGGCTGTGGCTATAGTAGC  984

seq1  TCAGTGTAGAGTTAAGTACTCTTATAGGATGTGTAAGATGTATTATCATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTAGAGTTAAGTACTCTTATAGGATGTGTAAGATGTATTATCATC  1034

seq1  ATGGGACAACTTATCCTTCAGTTCTTATTATCTAGTATTTCTATGACATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACAACTTATCCTTCAGTTCTTATTATCTAGTATTTCTATGACATA  1084

seq1  TGCACAGGCATACAAAAAGTAAGCCATGAGGAATGTGTCTTTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGCATACAAAAAGTAAGCCATGAGGAATGTGTCTTTGAATTC  1132