BAC Information

Click to search

BAC

Clone NameB6Ng01-327L03
Chromosome18 (Build37)7 (Build37)
Map Location 22,553,942 - 22,554,102123,481,280 - 123,482,403
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC225264, Klhl14, 4921528I01Rik, LOC546708, LOC100040547
Downstream geneAsxl3, Nol4, LOC100040579, LOC665797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327L03.bB6Ng01-327L03.g
ACCGA115170GA115171
length6731,112
definitionB6Ng01-327L03.b B6Ng01-327L03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,553,942 - 22,554,102)(123,481,280 - 123,482,403)
sequence
gaattcctgatttgattaaaataattttaggaagttagagtaattgatag
aaagtttaaggagatatttttagttattctgccaaaagatataacaaagt
tagaatcaagaatagaatgtgctccctcctcataaaacagtaagcaaatg
ttccatgagaaggggtaaaatgagcttccatgcactacacggatgaaaag
agcaggaggaaaaaaatagtcccggaacaaattaatgatcaaagaaaaca
ttcattctaggtcaggtccaaggatgaggccacaggtgtgcatcatgata
aagcaaggccatgaactaggactgggtaatactataaaaactactgcttt
gaacttataatgagcttatgaaatgaaaaagagataaaactactactttg
aacttataatcaacaatcctgctgtaatattttatcttgtgtaatatttt
atctatgtctgaatgaggtattttttcttacatagaaaactttgtcttag
ggcatataaaaaggactaaaggaaaaaataaagttgttggagtttgctca
atccaccaagtgtgtatctatataggtatgtgtgtatgtatatatacatg
tgcatgtatgaaattgatgaaacttgcttgttgaagctccctttgcttca
tactgtgtgtgtgtgtgtgtgtg

gaattctggcacaggacttgtatgtagcagacttatttttacttgaaggt
agttataaatatgatatacataaacattagtgtcttggcctgtctagcgt
tctcgttttccgatgtattttaaggtgactgttaagaagctctagaagcc
agctgactatggtgactgcagccgcagtgcacagaggctacgttcttcct
ccctatcactgtttttttggtatgggctgaagattagcattttacaaaga
aataacttacattaaaatatatgtattctaatgaccaaagaaggcacaaa
ttgagtaaaattaagagacagtatcaccttttgaattcttgttaactata
cagtattacttataatatatacttttagatattaatcagatttcttgtca
ctgaagtgacattacatttttaattctgtttctgctaagatacacggtaa
cagatcacaaaaaggtccacgagtccagtcaatgacgaccttttacaaac
agcatttttttaagtctgggtgacccatggaatggaattaggtttctctc
aaaagaaaaaaaatattctagtgctacttacatctgcaaaactatttaag
gaaatgttaattgtggaaaaagcaaacaacggtgcttagatcttcatttc
aattatcaagtagacaacacagtttaatataaaaaattcacatactcata
caggtttccctacaaatggaccatagtgttaggcaccaaatatttcaagt
tttgattttttttaaaaaatgtattccaatgataacactcttaactctta
atttaactctgtaagcatcatcatttctgtcaatcactttgtacagttca
taaaaattttattctagcgaactgaatccgattgtcctttcttggtaccc
ttcattaagtagtttgtcagttttctcttaactaccaaatttgctacatc
tctattacctttctaaaatatttgacttctacaagaaattattatatata
catgtttatcaaactaacaaattatgtctgaatggggaataaaaatgatc
ttttttttatttttgagacagtttctctgtgttagcctggcctgtctgga
ctccactctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_22553942_22554102
seq2: B6Ng01-327L03.b_624_718 (reverse)

seq1  CACACACACACACACACACAGTTATACCCACACAATTACCAAGTACACAC  50
      |||||||||||||||||||||               ||  |||       
seq2  CACACACACACACACACACAG---------------TATGAAG-------  28

seq1  ATACTCATACATAGGTATGCGTGCACACCTGCACATGTATACACACACAC  100
               || ||| | || |  |||      || || |         |
seq2  ---------CAAAGGGA-GCTTCAACA----AGCAAGTTT---------C  55

seq1  ATACACAATTTCACATACACACACATGTATACACACACATACACAATTAT  150
      ||   ||||||  ||||||  ||||||||||                |||
seq2  AT---CAATTT--CATACATGCACATGTATA----------------TAT  84

seq1  ACATACACACA  161
      |||||||||||
seq2  ACATACACACA  95


seq1: chr7_123481280_123482403
seq2: B6Ng01-327L03.g_66_1177

seq1  GAATTCTGGCACAGGACTTGTATGTAGCAGACTTATTTTTACTTGAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCACAGGACTTGTATGTAGCAGACTTATTTTTACTTGAAGGT  50

seq1  AGTTATAAATATGATATACATAAACATTAGTGTCTTGGCCTGTCTAGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAAATATGATATACATAAACATTAGTGTCTTGGCCTGTCTAGCGT  100

seq1  TCTCGTTTTCCGATGTATTTTAAGGTGACTGTTAAGAAGCTCTAGAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTTTCCGATGTATTTTAAGGTGACTGTTAAGAAGCTCTAGAAGCC  150

seq1  AGCTGACTATGGTGACTGCAGCCGCAGTGCACAGAGGCTACGTTCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTATGGTGACTGCAGCCGCAGTGCACAGAGGCTACGTTCTTCCT  200

seq1  CCCTATCACTGTTTTTTTGGTATGGGCTGAAGATTAGCATTTTACAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCACTGTTTTTTTGGTATGGGCTGAAGATTAGCATTTTACAAAGA  250

seq1  AATAACTTACATTAAAATATATGTATTCTAATGACCAAAGAAGGCACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTACATTAAAATATATGTATTCTAATGACCAAAGAAGGCACAAA  300

seq1  TTGAGTAAAATTAAGAGACAGTATCACCTTTTGAATTCTTGTTAACTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAAAATTAAGAGACAGTATCACCTTTTGAATTCTTGTTAACTATA  350

seq1  CAGTATTACTTATAATATATACTTTTAGATATTAATCAGATTTCTTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTACTTATAATATATACTTTTAGATATTAATCAGATTTCTTGTCA  400

seq1  CTGAAGTGACATTACATTTTTAATTCTGTTTCTGCTAAGATACACGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGACATTACATTTTTAATTCTGTTTCTGCTAAGATACACGGTAA  450

seq1  CAGATCACAAAAAGGTCCACGAGTCCAGTCAATGACGACCTTTTACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCACAAAAAGGTCCACGAGTCCAGTCAATGACGACCTTTTACAAAC  500

seq1  AGCATTTTTTTAAGTCTGGGTGACCCATGGAATGGAATTAGGTTTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTTTTAAGTCTGGGTGACCCATGGAATGGAATTAGGTTTCTCTC  550

seq1  AAAAGAAAAAAAATATTCTAGTGCTACTTACATCTGCAAAACTATTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAAATATTCTAGTGCTACTTACATCTGCAAAACTATTTAAG  600

seq1  GAAATGTTAATTGTGGAAAAAGCAAACAACGGTGCTTAGATCTTCATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTAATTGTGGAAAAAGCAAACAACGGTGCTTAGATCTTCATTTC  650

seq1  AATTATCAAGTAGACAACACAGTTTAATATAAAAAATTCACATACTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCAAGTAGACAACACAGTTTAATATAAAAAATTCACATACTCATA  700

seq1  CAGGTTTCCCTACAAATGGACCATAGTGTTAGGCACCAAATATTTCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCCCTACAAATGGACCATAGTGTTAGGCACCAAATATTTCAAGT  750

seq1  TTTGATTTTTTTTAAAAAATGTATTCCAATGATAACACTCTTAACTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTTTTTAAAAAATGTATTCCAATGATAACACTCTTAACTCTTA  800

seq1  ATTTAACTCTGTAAGCATCATCATTTCTGTCAATCACTTTGTACAGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTCTGTAAGCATCATCATTTCTGTCAATCACTTTGTACAGTTCA  850

seq1  TAAAAATTTTATTCTAGCGAACTGAATCCGATTGTCCTTTCTTGGTACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTTATTCTAGCGAACTGAATCCGATTGTCCTTTCTTGGTACCC  900

seq1  TTCATTAAGTAGTTTGTCAGTTTTCTCTTAACTACCAAATTTGCTACATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAGTAGTTTGTCAGTTTTCTCTTAACTACCAAATTTGCTACATC  950

seq1  TCTATTACCTTTCTAAAAATATTTGAACTTCTAACCAAGAAATTTATTAT  1000
      |||||||||||||| |||||||||| |||||||  ||||||| |||||||
seq2  TCTATTACCTTTCT-AAAATATTTG-ACTTCTA--CAAGAAA-TTATTAT  995

seq1  ATATACATGTTTATCAAAACTAAACAAAATTATGTCTGAAATGGGGAATA  1050
      ||||||||||||||| |||||||   |||||||||||| |||||||||||
seq2  ATATACATGTTTATC-AAACTAA--CAAATTATGTCTG-AATGGGGAATA  1041

seq1  AAAATGAATCTTTTTTTATTTTTTGAGACAGGGTTTCTCTGTG-TAGCCT  1099
      |||||| ||||||||||  |||||||||||  ||||||||||| ||||||
seq2  AAAATG-ATCTTTTTTTTATTTTTGAGACA--GTTTCTCTGTGTTAGCCT  1088

seq1  TGGCTGTCCTGGAACTCACTCTGTA  1124
       | |||| |||||   |||||||||
seq2  GGCCTGT-CTGGACTCCACTCTGTA  1112


| Home | SequenceCutter | Blast | Download |