BAC Information

Click to search

BAC

Clone NameB6Ng01-327L12
Chromosome18 (Build37)
Map Location 17,445,957 - 17,447,075
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327L12.bB6Ng01-327L12.g
ACCGA115186GA115187
length7781,111
definitionB6Ng01-327L12.b B6Ng01-327L12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagcagaggaatctcaaatagctgagaaacacttaaagaaata
ttgaacaaccttagccatcagggaaatcaaaatcaaaacgactttgagat
tccatcttatatctgtcaggatgcctaagagcaaaaatacaaatgacagc
tgatgctggcgaggatgtggagcaataggaaaatcctccactgctggtgg
gaatacaaacctatatttccactttggaaatcagtatggagtttttgttg
gttttgtttgtttatttgtttgttttttaaactaggaatcaatttacttc
cagactccaccatactactgctgggcatataatcaaaaggtactccatta
taccacaagggtacttgttcaactatgttcagagcaagcttattcacaat
agccaggaactagaaacaacctaggtatatcccaactgaaggatggataa
aaactattactcagcttttgaaaacaattacaacatggaattcgttggca
aatgggtagaactaggaaaaaaaatcaccctgagtgaggtaacccatatg
cagaatgacaaaaatggtatgtattcacttgcaagtggatattagctata
aagtaagggacgattatactaaaatccacagacccagagaggctaagtaa
tgaggatttaaatggagatgctaggatctccctgggaaggagaaacagaa
tagatttcacaggtggactcagggacaggtggggatgagaacagggggaa
ggtggcaggagggagagagagagagaga

gaattccatatcataaagtgtgtccaattattttactctaaaaagatgtt
tgaaacagaatacatgccaaatatgaaagaaaaaaacacacaagttgctt
aaatgcttaaaaatataatttcctgttataaacactgaaacaagctattt
ctacatacaacaccatcaattgaaaacgaagctagctgacttgtttcact
ctggaattcagtattaatcatttggggctcagaccatgtttctgtcaaat
ttagttctcttacttttagcaaaataactccttacccatggttcaacagc
tttaagaaattagatagaaatatgcatatataatttgttctttctttaaa
accatatagcatacctttcaaaacatacttcttataaattaggttagaga
agaacttattactaaataattatctcaatcaaaaagggatgtcctatgaa
ctacattaagatgaacagaggagggaaaatatgggttcccaaaagaggta
aatacttaatttctgtagtagaaagttgttaaatagtgcttgatgcaaac
cagcaaataatgatttatagctagggagtcaaataggagaagaaagtgtt
aagttctgaggatatggcctcaatggattgggaagtaaaacaggataatg
ttaacttctacattgtacacagtaatttgttgattcatagcacaaatttc
aattttcaaattacatacatgtgcaattttgttttgtttttaaaaaatgg
ctcatgcttccaagaagaaaatcagaattgacgggtggaaaaaggactga
aatctgcaaaggtttaaggaatagaattatgatttgagattgttaaacag
ccaattcctggcttctttaagtaagcaaccagacattctaaaatgcttta
aaccttcaaggaaatttaccattatatggggtgtctttgaaaaatgggtt
aaataagcatagtcacattttgaacatgaaagtgaaactatcaaaaaaat
ggaatgaaacagaggtatccataggatcatatacaatgtataaaattgac
agttaaaatatacctatatgtgaaagtaatgttattgggggtgaaaccaa
aatatgtacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17445957_17447075
seq2: B6Ng01-327L12.g_69_1179 (reverse)

seq1  TAGTACATATTTTGTTTTCACCCCC-ATAACATTTACTTTCAACATTATA  49
      |||||||||||||| |||||||||| |||||| |||||||| ||| ||||
seq2  TAGTACATATTTTGGTTTCACCCCCAATAACA-TTACTTTC-ACA-TATA  47

seq1  -GTATATTTTTAACTGTCAAATTTTATAACATTTGTATATGATCCTTATG  98
       ||||| ||||||||||| |||||||| ||| ||||||||||||| ||||
seq2  GGTATA-TTTTAACTGTC-AATTTTAT-ACA-TTGTATATGATCC-TATG  92

seq1  GATAACCTCTTGTTTCATTTCCATTTTTTTGATAAGTTTCACTTTCATGT  148
      ||| ||||| ||||||| ||||||||||||||| ||||||||||||||||
seq2  GAT-ACCTC-TGTTTCA-TTCCATTTTTTTGAT-AGTTTCACTTTCATGT  138

seq1  TCAAAATGTGACTATGCTTATTTAA-CCATTTTTCAAAGACACCCCATAT  197
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAAAATGTGACTATGCTTATTTAACCCATTTTTCAAAGACACCCCATAT  188

seq1  AATGGTAAA-TTCCTTGAAGGTTTAAAGCATTTTAGAATGTCTGGTTGCT  246
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAAATTTCCTTGAAGGTTTAAAGCATTTTAGAATGTCTGGTTGCT  238

seq1  TACTTAAAGAAGCCAGGAATTGGCTGTTTAACAATCTCAAATCATAATTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAAGAAGCCAGGAATTGGCTGTTTAACAATCTCAAATCATAATTC  288

seq1  TATTCCTTAAACCTTTGCAGATTTCAGTCCTTTTTCCACCCGTCAATTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTAAACCTTTGCAGATTTCAGTCCTTTTTCCACCCGTCAATTCT  338

seq1  GATTTTCTTCTTGGAAGCATGAGCCATTTTTTAAAAACAAAACAAAATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTTCTTGGAAGCATGAGCCATTTTTTAAAAACAAAACAAAATTG  388

seq1  CACATGTATGTAATTTGAAAATTGAAATTTGTGCTATGAATCAACAAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTATGTAATTTGAAAATTGAAATTTGTGCTATGAATCAACAAATT  438

seq1  ACTGTGTACAATGTAGAAGTTAACATTATCCTGTTTTACTTCCCAATCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTACAATGTAGAAGTTAACATTATCCTGTTTTACTTCCCAATCCA  488

seq1  TTGAGGCCATATCCTCAGAACTTAACACTTTCTTCTCCTATTTGACTCCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCATATCCTCAGAACTTAACACTTTCTTCTCCTATTTGACTCCC  538

seq1  TAGCTATAAATCATTATTTGCTGGTTTGCATCAAGCACTATTTAACAACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATAAATCATTATTTGCTGGTTTGCATCAAGCACTATTTAACAACT  588

seq1  TTCTACTACAGAAATTAAGTATTTACCTCTTTTGGGAACCCATATTTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTACAGAAATTAAGTATTTACCTCTTTTGGGAACCCATATTTTCC  638

seq1  CTCCTCTGTTCATCTTAATGTAGTTCATAGGACATCCCTTTTTGATTGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGTTCATCTTAATGTAGTTCATAGGACATCCCTTTTTGATTGAG  688

seq1  ATAATTATTTAGTAATAAGTTCTTCTCTAACCTAATTTATAAGAAGTATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTTAGTAATAAGTTCTTCTCTAACCTAATTTATAAGAAGTATG  738

seq1  TTTTGAAAGGTATGCTATATGGTTTTAAAGAAAGAACAAATTATATATGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGGTATGCTATATGGTTTTAAAGAAAGAACAAATTATATATGC  788

seq1  ATATTTCTATCTAATTTCTTAAAGCTGTTGAACCATGGGTAAGGAGTTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTATCTAATTTCTTAAAGCTGTTGAACCATGGGTAAGGAGTTAT  838

seq1  TTTGCTAAAAGTAAGAGAACTAAATTTGACAGAAACATGGTCTGAGCCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAAAAGTAAGAGAACTAAATTTGACAGAAACATGGTCTGAGCCCC  888

seq1  AAATGATTAATACTGAATTCCAGAGTGAAACAAGTCAGCTAGCTTCGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTAATACTGAATTCCAGAGTGAAACAAGTCAGCTAGCTTCGTTT  938

seq1  TCAATTGATGGTGTTGTATGTAGAAATAGCTTGTTTCAGTGTTTATAACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGATGGTGTTGTATGTAGAAATAGCTTGTTTCAGTGTTTATAACA  988

seq1  GGAAATTATATTTTTAAGCATTTAAGCAACTTGTGTGTTTTTTTCTTTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTATATTTTTAAGCATTTAAGCAACTTGTGTGTTTTTTTCTTTCA  1038

seq1  TATTTGGCATGTATTCTGTTTCAAACATCTTTTTAGAGTAAAATAATTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCATGTATTCTGTTTCAAACATCTTTTTAGAGTAAAATAATTGG  1088

seq1  ACACACTTTATGATATGGAATTC  1119
      |||||||||||||||||||||||
seq2  ACACACTTTATGATATGGAATTC  1111


| Home | SequenceCutter | Blast | Download |