BAC Information

Click to search

BAC

Clone NameB6Ng01-327N11
Chromosome18 (Build37)
Map Location 71,624,501 - 71,625,516
singlet/doubletsinglet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327N11.bB6Ng01-327N11.g
ACCGA115267GA115268
length1,083819
definitionB6Ng01-327N11.b B6Ng01-327N11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttatcactgagccccatttttaatagggttatttgattc
tctggagtctaacttcttgagttctttgtatatattggatattagccatc
taccagatgcaggtttggtaaagatctttctcaaatctgttgattgctgt
tttgtcctagtgacagtgtccttgttaaatattaaatgtcatcttcatgc
aattgctaagtcatacgtgaccattagcatttactcacttccaggaacac
agtgaaagcttttctcgattaagaccgacttcttggaaggtctataaaga
attgtcataattattttaacagatattggaagagtcatgttaactgtggg
tggggccattccctcagtgggaggtcttcagctgtatggaatgagattgt
aagcggaacacttcagttatcatttgttttttccttctttagtctgactg
ccttccgctactgcttctgtgccttaatcagcaatggtgaactataacac
tgagctgaaatgaacccatgccctcttcagttgccattatcacagcatca
gaagaagaaaacaagacattctttattatgatttcattactgacactctt
tattctaaacaaaaagttgggaaactgtccttagctgtttctacattttg
acttatagatttctgtaatagttttcatctagtgtaaaataagcttattt
atgacaggtaagagaaacacttgtctctgagtgtcatgataagtatttag
aatatgtattatattcatatgattagatattatatctgtttaggaaaatg
gcagcagtaggttcttctttagatccttgacatccccaactgcaggtatt
tggctacttttacagccctagacattgattccctcacataaaatgggctt
taaatccaattagacagatgttgccccaaagatatacaccacgattgaac
cactggagatatcttgttggactagccacagtatgggttcacgggtttta
caacaggatatgtaggactatggattgcttttctcccttgataacttcat
agcatctctgagcttgtgtgggcttgcctgtgg

gaattctgagaaagaccacaaaccaccctgaccttgctaggattccctgt
gattttaaaagcggtgacgttaattactgacacataaattcaaaatgtat
ttaaaaaaatgaatttatgaaattcctaggcaaatggatggacctggagg
gtatcatcctgagtgaggtaacccaatcacaaaggaactcgcacaatatg
tactcactgataagtggatattagcccagaaacttaggatacccaagata
taagatacaacttgccaaacgcatgaaattcaagaagaacgaagtccaaa
gtgtggacactttaccctttcttagaaatgggaacaaaacacccatggaa
ggagttacagagacaaaatttggagctgtgacgaaaggatggaccatcta
gtgattgccatatgcagggatccatcctataatcagcttccaaatgctga
caccattgcatacactagcaagattttgctgaaaggacccagatatagct
ctctcttatgagactatgccggggcctagcaaacacagaagtggatgatc
acagtcagctattggatgggtcacacggcccccaatggaggagctagaga
aattacccaaggagctaaagggaactgcaaccctataggtggaacaaaaa
tatgaactaaccagtaccccggagctcttctctctagctgcatatgtatc
aaaagatggcctagtcagccatcactgcaaagagaggcccattgaacttg
caaactttatatgccccagtacaggggaacgccagggccaaaaaggggga
gtgggtggggtagggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71624501_71625516
seq2: B6Ng01-327N11.b_117_1128 (reverse)

seq1  CCACAAGGCAAGCCCACACAAGCTCAGAAGATGCTATGAAAGTTATCAAG  50
      |||| |||||||||||||||||||||| |||||||||| |||||||||||
seq2  CCAC-AGGCAAGCCCACACAAGCTCAG-AGATGCTATG-AAGTTATCAAG  47

seq1  GGAGAAAAGCAATCCATAGTCCTACATATCCTGTTGTAAAACCCGTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGCAATCCATAGTCCTACATATCCTGTTGTAAAACCCGTGAAC  97

seq1  CATAACTGTGGCTAGTCCAACAAGATATCTCCAGTGGTTCAATCGTGGTG  150
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTGTGGCTAGTCCAACAAGATATCTCCAGTGGTTCAATCGTGGTG  147

seq1  TTATATCTTTGGGGCAACATCTGTCTAATTGGATTTAAAGCCCATTTTAT  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TATATCTTTGGGGCAACATCTGTCTAATTGGATTTAAAGCCCATTTTAT  196

seq1  GTGAGGGAATCAATGTCTAGGGCTGTAAAAGTAGCCAAATACCTGCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAATCAATGTCTAGGGCTGTAAAAGTAGCCAAATACCTGCAGTT  246

seq1  GGGGATGTCAAGGATCTAAAGAAGAACCTACTGCTGCCATTTTCCTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGTCAAGGATCTAAAGAAGAACCTACTGCTGCCATTTTCCTAAAC  296

seq1  AGATATAATATCTAATCATATGAATATAATACATATTCTAAATACTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAATATCTAATCATATGAATATAATACATATTCTAAATACTTATC  346

seq1  ATGACACTCAGAGACAAGTGTTTCTCTTACCTGTCATAAATAAGCTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTCAGAGACAAGTGTTTCTCTTACCTGTCATAAATAAGCTTATT  396

seq1  TTACACTAGATGAAAACTATTACAGAAATCTATAAGTCAAAATGTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTAGATGAAAACTATTACAGAAATCTATAAGTCAAAATGTAGAAA  446

seq1  CAGCTAAGGACAGTTTCCCAACTTTTTGTTTAGAATAAAGAGTGTCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGGACAGTTTCCCAACTTTTTGTTTAGAATAAAGAGTGTCAGTA  496

seq1  ATGAAATCATAATAAAGAATGTCTTGTTTTCTTCTTCTGATGCTGTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCATAATAAAGAATGTCTTGTTTTCTTCTTCTGATGCTGTGATA  546

seq1  ATGGCAACTGAAGAGGGCATGGGTTCATTTCAGCTCAGTGTTATAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACTGAAGAGGGCATGGGTTCATTTCAGCTCAGTGTTATAGTTCA  596

seq1  CCATTGCTGATTAAGGCACAGAAGCAGTAGCGGAAGGCAGTCAGACTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCTGATTAAGGCACAGAAGCAGTAGCGGAAGGCAGTCAGACTAAA  646

seq1  GAAGGAAAAAACAAATGATAACTGAAGTGTTCCGCTTACAATCTCATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAAACAAATGATAACTGAAGTGTTCCGCTTACAATCTCATTCC  696

seq1  ATACAGCTGAAGACCTCCCACTGAGGGAATGGCCCCACCCACAGTTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCTGAAGACCTCCCACTGAGGGAATGGCCCCACCCACAGTTAACA  746

seq1  TGACTCTTCCAATATCTGTTAAAATAATTATGACAATTCTTTATAGACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTTCCAATATCTGTTAAAATAATTATGACAATTCTTTATAGACCT  796

seq1  TCCAAGAAGTCGGTCTTAATCGAGAAAAGCTTTCACTGTGTTCCTGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAGTCGGTCTTAATCGAGAAAAGCTTTCACTGTGTTCCTGGAAG  846

seq1  TGAGTAAATGCTAATGGTCACGTATGACTTAGCAATTGCATGAAGATGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAATGCTAATGGTCACGTATGACTTAGCAATTGCATGAAGATGAC  896

seq1  ATTTAATATTTAACAAGGACACTGTCACTAGGACAAAACAGCAATCAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATTTAACAAGGACACTGTCACTAGGACAAAACAGCAATCAACA  946

seq1  GATTTGAGAAAGATCTTTACCAAACCTGCATCTGGTAGATGGCTAATATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGAAAGATCTTTACCAAACCTGCATCTGGTAGATGGCTAATATC  996

seq1  CAATATATACAAAGAA  1016
      ||||||||||||||||
seq2  CAATATATACAAAGAA  1012


| Home | SequenceCutter | Blast | Download |