BAC Information

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BAC

Clone NameB6Ng01-328G17
Chromosome18 (Build37)
Map Location 28,054,920 - 28,181,234
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977, EG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328G17.bB6Ng01-328G17.g
ACCGA115688GA115689
length1,1691,141
definitionB6Ng01-328G17.b B6Ng01-328G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,054,920 - 28,056,102)(28,180,077 - 28,181,234)
sequence
gaattcttttgttactttctctgattccagcagccccatgttcacttcat
tctgaatttgccagtggttttaattactgtaatattctatttatctaatc
tctaatttttttatgagtaaattgcccagtattgaacctggggaaggatt
tgagtgagacaaaaaaaaaaaaaaaaaaggtgtggataaagacaaagcct
aatgaatttcaacaagaagctgacccaaaagtttctttgcagcatactcc
acaaacacaaaacacactcccaggcctagcctcacttatgagcaagtggg
actgtgggaactcccattcatcatcagtaagattaagtggagaaagcctt
ttgaatcatgctattcttaaacattaaaattacttgaacttcctcaactt
tctctgtctttcatccctctctctgtcactctgtaaccttaagtctcaca
tacacaaagatctaaataattctcctctctcctttcatgtggcattaggg
taaataacttgtgtggttcatgtctctataccacaattaaaatgaacttt
aatgtctgattcgaatcaacatctttctcagcaatagttatcaccagctg
acagaccctcttgatgagaacacctctagatcagtgttgcattttttttg
tcattgctgtttcaatgcagggtctcatttagctcagactggccttgaac
ttctatgagcctagagtgatcttgaactcttaaccctttgcttcttcttt
gtgaggtccaggattacagacctgtgccaccccaacctgaatatgagctg
ggatgaaaagcagagctttccatacaccaggcacacactggagcaactgc
acaatggctgctcagttcaatgagttcaatgttactgtttcctcttctac
tgctgaaaatactgctctcttctgcttggtgcatttccccaacccttcat
gttgctcattaactttgtatctccccctcactgtgcaatcaccattgcaa
caatagaactaatcatagcttgaatttaaagtattgttatagtgtacctt
gtattaaggcaggacatcatacaattctgagtggcattaggagtatagat
ctgctgccataacagataacccttggaaaatactcctagtccctcatgta
tctgcacgttctgcctgcc
gaattcaaaattccgcagtgtcaacattgtggcacacagacatgttaaac
atggtttagatcttttctgcacaggaagttctacgatgccagactattaa
gagaaaggacaagtccagtgaggtgtgtcttcagggctttagttagatca
tgaaacagaaaaggagagagttgccatgggcagggaagatcggggaaaag
catggatttggggatatcagggacatgtaaacagcatagttccaaatatc
tctcacagactagctgaagactctcaaggctgatgaggctgtgtttaaat
ttctgaaatgcaccaaagttatgtccccaaaatggatactataagcaaaa
tattttatttaacctttcagttcaggtttcaaccttggtgtaaaaagaga
tgttttcagcttataaagtagaatggcaaaaagactggcaaatgttcaca
tatatctatctccttagaatgacagacaatgatcctccaatccagaatat
ctgggcagtaactcctgtcactcaaatacagtgaagtggcttcttacaaa
gttatattcaaataactcacactctcactgggcaaaaagaaatttcaatc
ctagttttttgagatatagcatctctctagctcaccacttaaggttatgc
cagccagtttcagcggaacaggtctgaaagacagactttgactgagtggc
tttagttcttattgttgataggcattttgttacttcctacagagtactct
tttccactaagcaattccaggacctgcagtgctcctcagttagatacatt
cacattttacttggctctccacatttacctttgccccaaaatataattta
ttcctccccattctagagatccctctggccaagtcctaagatccaaaagt
actaaagtaagtctatggcctgtatctcagcgggtccttctgatttcttc
actgaaaacagagggcatttaaatgggaaagagagagaataccactagag
catgaggacttagagaaccagggggcaaagggaagtctcctgctaggttt
catcatagaacccacatcaggttcaaataaaacacaacttcacctggatt
ttggggttggcatgctcggtcataaaaacctcatctgtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28054920_28056102
seq2: B6Ng01-328G17.b_45_1213

seq1  GAATTCTTTTGTTACTTTCTCTGATTCCAGCAGCCCCATGTTCACTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTTACTTTCTCTGATTCCAGCAGCCCCATGTTCACTTCAT  50

seq1  TCTGAATTTGCCAGTGGTTTTAATTACTGTAATATTCTATTTATCTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTTGCCAGTGGTTTTAATTACTGTAATATTCTATTTATCTAATC  100

seq1  TCTAATTTTTTTATGAGTAAATTGCCCAGTATTGAACCTGGGGAAGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTTTTTATGAGTAAATTGCCCAGTATTGAACCTGGGGAAGGATT  150

seq1  TGAGTGAGACAAAAAAAAAAAAAAAAAAGGTGTGGATAAAGACAAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGACAAAAAAAAAAAAAAAAAAGGTGTGGATAAAGACAAAGCCT  200

seq1  AATGAATTTCAACAAGAAGCTGACCCAAAAGTTTCTTTGCAGCATACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTCAACAAGAAGCTGACCCAAAAGTTTCTTTGCAGCATACTCC  250

seq1  ACAAACACAAAACACACTCCCAGGCCTAGCCTCACTTATGAGCAAGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACAAAACACACTCCCAGGCCTAGCCTCACTTATGAGCAAGTGGG  300

seq1  ACTGTGGGAACTCCCATTCATCATCAGTAAGATTAAGTGGAGAAAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGAACTCCCATTCATCATCAGTAAGATTAAGTGGAGAAAGCCTT  350

seq1  TTGAATCATGCTATTCTTAAACATTAAAATTACTTGAACTTCCTCAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCATGCTATTCTTAAACATTAAAATTACTTGAACTTCCTCAACTT  400

seq1  TCTCTGTCTTTCATCCCTCTCTCTGTCACTCTGTAACCTTAAGTCTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTTTCATCCCTCTCTCTGTCACTCTGTAACCTTAAGTCTCACA  450

seq1  TACACAAAGATCTAAATAATTCTCCTCTCTCCTTTCATGTGGCATTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAGATCTAAATAATTCTCCTCTCTCCTTTCATGTGGCATTAGGG  500

seq1  TAAATAACTTGTGTGGTTCATGTCTCTATACCACAATTAAAATGAACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACTTGTGTGGTTCATGTCTCTATACCACAATTAAAATGAACTTT  550

seq1  AATGTCTGATTCGAATCAACATCTTTCTCAGCAATAGTTATCACCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGATTCGAATCAACATCTTTCTCAGCAATAGTTATCACCAGCTG  600

seq1  ACAGACCCTCTTGATGAGAACACCTCTAGATCAGTGTTGCATTTTTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCTCTTGATGAGAACACCTCTAGATCAGTGTTGCATTTTTTTTG  650

seq1  TCATTGCTGTTTCAATGCAGGGTCTCATTTAGCTCAGACTGGCCTTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTGTTTCAATGCAGGGTCTCATTTAGCTCAGACTGGCCTTGAAC  700

seq1  TTCTATGAGCCTAGAGTGATCTTGAACTCTTAACCCTTTGCTTCTTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAGCCTAGAGTGATCTTGAACTCTTAACCCTTTGCTTCTTCTTT  750

seq1  GTGAGGTCCAGGATTACAGACCTGTGCCACCCCAACCTGAATATGAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTCCAGGATTACAGACCTGTGCCACCCCAACCTGAATATGAGCTG  800

seq1  GGATGAAAAGCAGAGCTTTCCATACACCAGGCACACACTGGAGCAACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAAAGCAGAGCTTTCCATACACCAGGCACACACTGGAGCAACTGC  850

seq1  ACAATGGCTGCTCAGTTCAATGAGTTCAATGTTACTGTTTCCTCTTCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCTGCTCAGTTCAATGAGTTCAATGTTACTGTTTCCTCTTCTAC  900

seq1  TGCTGAAAATACTGCTCTCTTCTGCTTGGTGCATTTCCCCAACCCTTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAAATACTGCTCTCTTCTGCTTGGTGCATTTCCCCAACCCTTCAT  950

seq1  GTTGCTCATTAACTTTGTATTCTCCCCCTCACTGTTGCAATCACCATTGC  1000
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  GTTGCTCATTAACTTTGTA-TCTCCCCCTCACTG-TGCAATCACCATTGC  998

seq1  AACAATAG-ACTAATCATAGCTTGGAATTTTAAAGTATTGTTATAGTGTA  1049
      |||||||| |||||||||||||||  | ||||||||||||||||||||||
seq2  AACAATAGAACTAATCATAGCTTG--AATTTAAAGTATTGTTATAGTGTA  1046

seq1  CC-TGTATTAAGGCAAGGACATCATACAA-TCTGAAGTGGCAATTAGGAG  1097
      || ||||||||||| |||||||||||||| |||| |||||| ||||||||
seq2  CCTTGTATTAAGGC-AGGACATCATACAATTCTG-AGTGGC-ATTAGGAG  1093

seq1  TAATTAAGATCTGCTGCCAATAACAGATAAACCCTTGAAAATACTCCTAA  1147
      ||    |||||||||||| ||||||||||| || | |||||||||||| |
seq2  TA---TAGATCTGCTGCC-ATAACAGATAACCCTTGGAAAATACTCCT-A  1138

seq1  GTCCCCTTCAATGTATCTGCAACGTTTCTGCCTGCC  1183
      |||||  || |||||||||| ||| |||||||||||
seq2  GTCCC--TC-ATGTATCTGC-ACG-TTCTGCCTGCC  1169

seq1: chr18_28180077_28181234
seq2: B6Ng01-328G17.g_68_1208 (reverse)

seq1  TTGACAGATGAGTCTTTTAATAGAAAAACAAAACAATTCCCCACCCCAAA  50
      ||||||||||||  ||||      |  ||  | ||  | || |||||   
seq2  TTGACAGATGAGGTTTTT------ATGACCGAGCA--TGCCAACCCC---  39

seq1  AAAATCAAGGTGAAGTTGTGTTTTATTTGAACCTGATGTGGGTTCTATGA  100
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAATCCAGGTGAAGTTGTGTTTTATTTGAACCTGATGTGGGTTCTATG-  88

seq1  ATGAAACTTAGCAGGAGACTTCCCTTTGCCCCCTGGTTTCTCTAAGTTCT  150
      ||||||| |||||||||||||||||||||||||||| ||||||||| || 
seq2  ATGAAACCTAGCAGGAGACTTCCCTTTGCCCCCTGG-TTCTCTAAG-TCC  136

seq1  TCATGCTTCTAGTGTATTTCTCTTCTCTTTCCCATTTAAATGCCCTCTGT  200
      |||||| |||||||   ||||| |||||||||||||||||||||||||||
seq2  TCATGC-TCTAGTGGTATTCTC-TCTCTTTCCCATTTAAATGCCCTCTGT  184

seq1  TTTCAGTGAAAGAAATCAGAAGGACCCGCTGAGATACAGGCCATAGACTT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTG-AAGAAATCAGAAGGACCCGCTGAGATACAGGCCATAGACTT  233

seq1  ACTTTAGTACTTTTGGATCTTAGGACTTGGCCAGAGGGATCTCTAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTACTTTTGGATCTTAGGACTTGGCCAGAGGGATCTCTAGAATG  283

seq1  GGGAGGAATAAATTATATTTTGGGGCAAAGGTAAATGTGGAGAGCCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAATAAATTATATTTTGGGGCAAAGGTAAATGTGGAGAGCCAAGT  333

seq1  AAAATGTGAATGTATCTAACTGAGGAGCACTGCAGGTCCTGGAATTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGAATGTATCTAACTGAGGAGCACTGCAGGTCCTGGAATTGCTT  383

seq1  AGTGGAAAAGAGTACTCTGTAGGAAGTAACAAAATGCCTATCAACAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAAGAGTACTCTGTAGGAAGTAACAAAATGCCTATCAACAATAA  433

seq1  GAACTAAAGCCACTCAGTCAAAGTCTGTCTTTCAGACCTGTTCCGCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAGCCACTCAGTCAAAGTCTGTCTTTCAGACCTGTTCCGCTGAA  483

seq1  ACTGGCTGGCATAACCTTAAGTGGTGAGCTAGAGAGATGCTATATCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGGCATAACCTTAAGTGGTGAGCTAGAGAGATGCTATATCTCAA  533

seq1  AAAACTAGGATTGAAATTTCTTTTTGCCCAGTGAGAGTGTGAGTTATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGGATTGAAATTTCTTTTTGCCCAGTGAGAGTGTGAGTTATTTG  583

seq1  AATATAACTTTGTAAGAAGCCACTTCACTGTATTTGAGTGACAGGAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACTTTGTAAGAAGCCACTTCACTGTATTTGAGTGACAGGAGTTA  633

seq1  CTGCCCAGATATTCTGGATTGGAGGATCATTGTCTGTCATTCTAAGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGATATTCTGGATTGGAGGATCATTGTCTGTCATTCTAAGGAGA  683

seq1  TAGATATATGTGAACATTTGCCAGTCTTTTTGCCATTCTACTTTATAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATGTGAACATTTGCCAGTCTTTTTGCCATTCTACTTTATAAGC  733

seq1  TGAAAACATCTCTTTTTACACCAAGGTTGAAACCTGAACTGAAAGGTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACATCTCTTTTTACACCAAGGTTGAAACCTGAACTGAAAGGTTAA  783

seq1  ATAAAATATTTTGCTTATAGTATCCATTTTGGGGACATAACTTTGGTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATTTTGCTTATAGTATCCATTTTGGGGACATAACTTTGGTGCA  833

seq1  TTTCAGAAATTTAAACACAGCCTCATCAGCCTTGAGAGTCTTCAGCTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAATTTAAACACAGCCTCATCAGCCTTGAGAGTCTTCAGCTAGT  883

seq1  CTGTGAGAGATATTTGGAACTATGCTGTTTACATGTCCCTGATATCCCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAGATATTTGGAACTATGCTGTTTACATGTCCCTGATATCCCCA  933

seq1  AATCCATGCTTTTCCCCGATCTTCCCTGCCCATGGCAACTCTCTCCTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGCTTTTCCCCGATCTTCCCTGCCCATGGCAACTCTCTCCTTTT  983

seq1  CTGTTTCATGATCTAACTAAAGCCCTGAAGACACACCTCACTGGACTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCATGATCTAACTAAAGCCCTGAAGACACACCTCACTGGACTTGT  1033

seq1  CCTTTCTCTTAATAGTCTGGCATCGTAGAACTTCCTGTGCAGAAAAGATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTTAATAGTCTGGCATCGTAGAACTTCCTGTGCAGAAAAGATC  1083

seq1  TAAACCATGTTTAACATGTCTGTGTGCCACAATGTTGACACTGCGGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATGTTTAACATGTCTGTGTGCCACAATGTTGACACTGCGGAATT  1133

seq1  TTGAATTC  1158
      ||||||||
seq2  TTGAATTC  1141