BAC Information

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BAC

Clone NameB6Ng01-328N07
Chromosome18 (Build37)
Map Location 80,920,526 - 81,068,934
singlet/doubletdoublet
Overlap geneAtp9b
Upstream geneLOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1
Downstream geneSall3, LOC665124, LOC100039458, LOC100040871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328N07.bB6Ng01-328N07.g
ACCGA115985GA115986
length1,1471,141
definitionB6Ng01-328N07.b B6Ng01-328N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,920,526 - 80,921,681)(81,067,787 - 81,068,934)
sequence
gaattcctgctggccgggtcagcgagggaggctggcctgtccatcgggga
tgaccccacctgccgtgtctgtaagcagctggagctgtctttgtcacctc
ggttttctggtcttctttgctccattctataggacaagaagtggccacca
gacatgactgtccctgggacggtctgctcctctctgtagggttctctaca
gcaaatgggatgccctttgcttcaaggtctgtcttttcaaagttagagat
ttttatttgtttgttagttttatagcaaaaaaacttataatgagaaccag
cagctttctgatggcaacattgtaaccttctgcaaatgttcactttcttg
gaatattttaattaagccgtaaccccacagtgagccacttcgaccccagc
cttaggtaatgaggcggcactttttctcttccttctctgatatcagatga
ctgccgtcattttctcatgggtggtagtttcccccactgcagagcatgtg
gctccactgccccaggagcccctcagccctggcgagacacagtttcatcc
acccagagcaggcccagcttcccaaactatttttaaactgttttggttca
ataaagctctaaacaagttttgccaggcgcttttttccattaatttttaa
actggagtaaatcgcaaggggaatttaatccatgtgtctccgctcccttt
accctcaacccatcaagaggttgtgtggggccgtttgatgtccaagaaga
tgggagtttttaaaaagtctgcccggccctttatttcttcttagaaacag
gaagtggcatcttgccagagtgtaaatgagcataagcctcgcctcagcaa
ggcttcacgttaccaacacagcttgcccaggctgtccccactgagcctgg
gagctttccctggggctcagctccatccatccatccatccatccatccat
ccatccagtctattttaaaggagttcacttttccaaactgtaaatagcct
atcacgaaatgactatttgacctattaaaagatattttgtgtgtgatgct
gtggcatcctgtgccatgctatggtgtgtggtgcacaattgtgcatgtgt
gtgccgcagtgtgtgtggcgcccatgtagtcacaagaacaacctcgg
gaattccatccacattagcatccaatggataaaagacttaacatagatct
gacagaggagctcctaaacttgtaacttgcaattttaaatgttatttaaa
catgttaaagaagtgactcccatggatatatatgttccttttggcaagtt
ggcagtacttgtggaaatgacctgtagttccatgctaggtcatcttaaag
acttcagctgacttcctggtagaaatggacacacagctttagagaattgg
cgtagcagctggggacccagaagagctgaagcacttttggggaaatggtt
tacaaattttgcgtactcacacttctctacagagtacagtacaaatctac
aggagtctttacactgtagaactaatagaagtgtagcgatgagactattt
aaaaataaagtctggactttatggtttcttggtccctgttaggttcagtg
tactagcaacatctttggacaggcccctttcatgtattctaccattggtg
tctatttaggttgcttcttatacttctgtgacatttgacattgtcaattg
tgcacacatgctgctacataaatacctgggaggaaaatgggttttaagca
tgaatatgtttcctatggtagatcatacaaacaactgggaaatgctgtgt
ccactgtactttaagaagtaggcagtgtttttatatttgccaaccttggc
gttcttagcattttcaatgggcctttctgatatgtgtgctttaagtgcgg
ttttaatataagtaaatttctctaatacctaataacttggtaacttctgt
tatggcttatgtgtctttctgtagtgtttgggtaagaaagagcttgagaa
aatctctcgtgttttcttctgagtggacctttctttgcttgtgagttttc
aggcctttctgtcttgtggtcagcacccactgatgtatatgctgcagctt
cagcttccttccaggtgggcatacttgaatagaaattctttgttttagga
tgtctaatttagtaatcttttcatttaagttagaggttttttgttttcaa
ttattagtagtgtgtcagtgaagagcctttctgataaagttcttatgtta
attgctaatgtgtgaatcagtccttgggtacttaactgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_80920526_80921681
seq2: B6Ng01-328N07.b_45_1191

seq1  GAATTCCTGCTGGCCGGGTCAGCGAGGGAGGCTGGCCTGTCCATCGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTGGCCGGGTCAGCGAGGGAGGCTGGCCTGTCCATCGGGGA  50

seq1  TGACCCCACCTGCCGTGTCTGTAAGCAGCTGGAGCTGTCTTTGTCACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCACCTGCCGTGTCTGTAAGCAGCTGGAGCTGTCTTTGTCACCTC  100

seq1  GGTTTTCTGGTCTTCTTTGCTCCATTCTATAGGACAAGAAGTGGCCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTGGTCTTCTTTGCTCCATTCTATAGGACAAGAAGTGGCCACCA  150

seq1  GACATGACTGTCCCTGGGACGGTCTGCTCCTCTCTGTAGGGTTCTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGACTGTCCCTGGGACGGTCTGCTCCTCTCTGTAGGGTTCTCTACA  200

seq1  GCAAATGGGATGCCCTTTGCTTCAAGGTCTGTCTTTTCAAAGTTAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGGGATGCCCTTTGCTTCAAGGTCTGTCTTTTCAAAGTTAGAGAT  250

seq1  TTTTATTTGTTTGTTAGTTTTATAGCAAAAAAACTTATAATGAGAACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGTTTGTTAGTTTTATAGCAAAAAAACTTATAATGAGAACCAG  300

seq1  CAGCTTTCTGATGGCAACATTGTAACCTTCTGCAAATGTTCACTTTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCTGATGGCAACATTGTAACCTTCTGCAAATGTTCACTTTCTTG  350

seq1  GAATATTTTAATTAAGCCGTAACCCCACAGTGAGCCACTTCGACCCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTAATTAAGCCGTAACCCCACAGTGAGCCACTTCGACCCCAGC  400

seq1  CTTAGGTAATGAGGCGGCACTTTTTCTCTTCCTTCTCTGATATCAGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTAATGAGGCGGCACTTTTTCTCTTCCTTCTCTGATATCAGATGA  450

seq1  CTGCCGTCATTTTCTCATGGGTGGTAGTTTCCCCCACTGCAGAGCATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGTCATTTTCTCATGGGTGGTAGTTTCCCCCACTGCAGAGCATGTG  500

seq1  GCTCCACTGCCCCAGGAGCCCCTCAGCCCTGGCGAGACACAGTTTCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACTGCCCCAGGAGCCCCTCAGCCCTGGCGAGACACAGTTTCATCC  550

seq1  ACCCAGAGCAGGCCCAGCTTCCCAAACTATTTTTAAACTGTTTTGGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGCAGGCCCAGCTTCCCAAACTATTTTTAAACTGTTTTGGTTCA  600

seq1  ATAAAGCTCTAAACAAGTTTTGCCAGGCGCTTTTTTCCATTAATTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTCTAAACAAGTTTTGCCAGGCGCTTTTTTCCATTAATTTTTAA  650

seq1  ACTGGAGTAAATCGCAAGGGGAATTTAATCCATGTGTCTCCGCTCCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTAAATCGCAAGGGGAATTTAATCCATGTGTCTCCGCTCCCTTT  700

seq1  ACCCTCAACCCATCAAGAGGTTGTGTGGGGCCGTTTGATGTCCAAGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAACCCATCAAGAGGTTGTGTGGGGCCGTTTGATGTCCAAGAAGA  750

seq1  TGGGAGTTTTTAAAAAGTCTGCCCGGCCCTTTATTTCTTCTTAGAAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTTTTAAAAAGTCTGCCCGGCCCTTTATTTCTTCTTAGAAACAG  800

seq1  GAAGTGGCATCTTGCCAGAGTGTAAATGAGCATAAGCCTCGCCTCAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCATCTTGCCAGAGTGTAAATGAGCATAAGCCTCGCCTCAGCAA  850

seq1  GGCTTCAGGTTACCAACACAGCTTGCCCAGGCTGTCCCCACTGAGCCTGG  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACGTTACCAACACAGCTTGCCCAGGCTGTCCCCACTGAGCCTGG  900

seq1  GAGCTTTCCCTGGGGCTCAGGCTCCATCCATCCATCCATCCATCCATCCA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGCTTTCCCTGGGGCTCA-GCTCCATCCATCCATCCATCCATCCATCCA  949

seq1  TCCATCCAGTCTATTTTAAAGGAGGTTCACTTTTCCAAAACTGTTAAAAT  1000
      ||||||||||||||||||||||| |||||||||||| |||||||  ||||
seq2  TCCATCCAGTCTATTTTAAAGGA-GTTCACTTTTCC-AAACTGT--AAAT  995

seq1  AAGCCTATCACGAAATTGACTATTTTGACCTATTTAAAAGATATTTTTGT  1050
       |||||||||||||| |||||| ||||||||| |||||||||| ||||||
seq2  -AGCCTATCACGAAA-TGACTA-TTTGACCTA-TTAAAAGATA-TTTTGT  1040

seq1  GTGTGAATGCGTGTGGGCATCCCTGTGCCATGGTAT-GTGTGT-GTGCAC  1098
      ||||| |||| ||| ||||| ||||||||||| ||| |||||| ||||||
seq2  GTGTG-ATGC-TGT-GGCAT-CCTGTGCCATGCTATGGTGTGTGGTGCAC  1086

seq1  A--TGTGCATGTGTGTGCGCGAGTGTGTGT-GCGCACATGTAGGTCAC-A  1144
      |  |||||||||||||||   ||||||||| |||| |||||| ||||| |
seq2  AATTGTGCATGTGTGTGCCGCAGTGTGTGTGGCGCCCATGTA-GTCACAA  1135

seq1  GAACAACCTCGG  1156
      ||||||||||||
seq2  GAACAACCTCGG  1147

seq1: chr18_81067787_81068934
seq2: B6Ng01-328N07.g_68_1208 (reverse)

seq1  CCCCAG-TAAGTACACAAGAACTGATT--CACATTAGCAAATAACATTAG  47
      |||||| ||||||| |||| |||||||  ||||||||||| |||||| ||
seq2  CCCCAGTTAAGTACCCAAGGACTGATTCACACATTAGCAATTAACATAAG  50

seq1  GACTTTTATCAGGAAGGGCTTCTTCACTGACACCACTACTAATTAATTTG  97
       || |||||||| ||||   |||||||||||| ||||||||||  | |||
seq2  AAC-TTTATCAGAAAGG--CTCTTCACTGACA-CACTACTAAT--AATTG  94

seq1  AAAACAAAAAAACCTCTAACTTTAAATGAAAAGATTACTAAATTAGACAT  147
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAAC-AAAAAACCTCTAAC-TTAAATGAAAAGATTACTAAATTAGACAT  142

seq1  CCCTAAAACAAAGAATTTCTATTCAAGTATGCCCACCTGGAAGGAAGCTG  197
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCTAAAACAAAGAATTTCTATTCAAGTATGCCCACCTGGAAGGAAGCTG  191

seq1  AAGCCTGCAGCATATACATCAGTGGGTGCTGACCACAAGACAGAAAGGCC  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAG-CTGCAGCATATACATCAGTGGGTGCTGACCACAAGACAGAAAGGCC  240

seq1  TGAAAACTCACAAGCAAAGAAAGGTCCACTCAGAAGAAAACACGAGAGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTCACAAGCAAAGAAAGGTCCACTCAGAAGAAAACACGAGAGAT  290

seq1  TTTCTCAAGCTCTTTCTTACCCAAACACTACAGAAAGACACATAAGCCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAAGCTCTTTCTTACCCAAACACTACAGAAAGACACATAAGCCAT  340

seq1  AACAGAAGTTACCAAGTTATTAGGTATTAGAGAAATTTACTTATATTAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGTTACCAAGTTATTAGGTATTAGAGAAATTTACTTATATTAAA  390

seq1  ACCGCACTTAAAGCACACATATCAGAAAGGCCCATTGAAAATGCTAAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCACTTAAAGCACACATATCAGAAAGGCCCATTGAAAATGCTAAGAA  440

seq1  CGCCAAGGTTGGCAAATATAAAAACACTGCCTACTTCTTAAAGTACAGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAGGTTGGCAAATATAAAAACACTGCCTACTTCTTAAAGTACAGTG  490

seq1  GACACAGCATTTCCCAGTTGTTTGTATGATCTACCATAGGAAACATATTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCATTTCCCAGTTGTTTGTATGATCTACCATAGGAAACATATTC  540

seq1  ATGCTTAAAACCCATTTTCCTCCCAGGTATTTATGTAGCAGCATGTGTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAAAACCCATTTTCCTCCCAGGTATTTATGTAGCAGCATGTGTGC  590

seq1  ACAATTGACAATGTCAAATGTCACAGAAGTATAAGAAGCAACCTAAATAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGACAATGTCAAATGTCACAGAAGTATAAGAAGCAACCTAAATAG  640

seq1  ACACCAATGGTAGAATACATGAAAGGGGCCTGTCCAAAGATGTTGCTAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAATGGTAGAATACATGAAAGGGGCCTGTCCAAAGATGTTGCTAGT  690

seq1  ACACTGAACCTAACAGGGACCAAGAAACCATAAAGTCCAGACTTTATTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAACCTAACAGGGACCAAGAAACCATAAAGTCCAGACTTTATTTT  740

seq1  TAAATAGTCTCATCGCTACACTTCTATTAGTTCTACAGTGTAAAGACTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTCTCATCGCTACACTTCTATTAGTTCTACAGTGTAAAGACTCC  790

seq1  TGTAGATTTGTACTGTACTCTGTAGAGAAGTGTGAGTACGCAAAATTTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTTGTACTGTACTCTGTAGAGAAGTGTGAGTACGCAAAATTTGT  840

seq1  AAACCATTTCCCCAAAAGTGCTTCAGCTCTTCTGGGTCCCCAGCTGCTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTTCCCCAAAAGTGCTTCAGCTCTTCTGGGTCCCCAGCTGCTAC  890

seq1  GCCAATTCTCTAAAGCTGTGTGTCCATTTCTACCAGGAAGTCAGCTGAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTCTCTAAAGCTGTGTGTCCATTTCTACCAGGAAGTCAGCTGAAG  940

seq1  TCTTTAAGATGACCTAGCATGGAACTACAGGTCATTTCCACAAGTACTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGATGACCTAGCATGGAACTACAGGTCATTTCCACAAGTACTGC  990

seq1  CAACTTGCCAAAAGGAACATATATATCCATGGGAGTCACTTCTTTAACAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGCCAAAAGGAACATATATATCCATGGGAGTCACTTCTTTAACAT  1040

seq1  GTTTAAATAACATTTAAAATTGCAAGTTACAAGTTTAGGAGCTCCTCTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATAACATTTAAAATTGCAAGTTACAAGTTTAGGAGCTCCTCTGT  1090

seq1  CAGATCTATGTTAAGTCTTTTATCCATTGGATGCTAATGTGGATGGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTATGTTAAGTCTTTTATCCATTGGATGCTAATGTGGATGGAATT  1140

seq1  C  1148
      |
seq2  C  1141