BAC Information

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BAC

Clone NameB6Ng01-329A16
Chromosome18 (Build37)
Map Location 36,193,428 - 36,256,166
singlet/doubletdoublet
Overlap geneLOC100042150
Upstream geneLOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2
Downstream geneLOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329A16.bB6Ng01-329A16.g
ACCGA116132GA116133
length578696
definitionB6Ng01-329A16.b B6Ng01-329A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,255,589 - 36,256,166)(36,193,428 - 36,194,123)
sequence
gaattctcctgcttagtccccaaaggttttccagtttcagctcttgtatt
tcagtctgtgatccatttaatgtttagtgtgccttttgagggggcaggaa
gagagtgtacatatatacagaaactagaatacaacatcagggtcccacct
caggatgccatctatcttgtttttgagacaggttctctcattggccttgg
actctctgactcacctaagcttcgctggtcagagactccagggagccact
tacgtcagccagggatagggttgtatgaaggcaccactgcacagtgctca
ttactagggaccaaactcaggtcctcataattgctcggcaagtactctgt
gagctgagccatctccctgactctgcagtcagcccattctgacttacttg
tatatggtgtgacttaaaggttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
ttctctctctctctctctttctctctctctctctctccctctccccctcc
ccctccccctctccctctccctttccct
gaattccttaggaggtgagaagtctctgccttagccttctactgagcata
acaagagagcccttggccttatagttaggcgttagccattggctatgata
gataatcacgaaaaccctgtggcgtctaatctagaggaatacggaagggt
agtggcttgtgggttgctcaccggtgtttctctgggcctgtggtatccct
gggttcgggaaggagggaactggacactgtggtggtggagcacaggtgca
cacgcatttggaggtctggctgggaagtacaactattgagcatgggcaat
agcaatgcatgctcactcgattgaatagtgtggcttaggggatgagcccc
tcattactatctctgatccctgacccttgtccctagtcactttagcccag
gaagatggaggaagtagccaaggcttcccaactgactccagccaggctca
gctcttcttcctttgctcctgggccctgatgtgggggattaaaagtgagt
gaagtgattcttttttcaaacagaagcacctttgggagtagaggataaag
acccagaagtggaaatgactcttgggttccacaaagtaacaggaaaggaa
caggcttgactgtgtccattgtctgccactagctaggctcttagaggcag
ggaaaccatgtatataagtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36255589_36256166
seq2: B6Ng01-329A16.b_44_621 (reverse)

seq1  AGGGAGAGGGAGAGGGAGAGGGGGAGGGGGAGGGGGAGAGGGAGAGAGAG  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGGAGAGGGAGAGGGGGAGGGGGAGGGGGAGAGGGAGAGAGAG  50

seq1  AGAGAGAGAAAGAGAGAGAGAGAGAGAAAAGAAGAAGAAGAAGAAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAGAGAGAGAGAGAGAGAAAAGAAGAAGAAGAAGAAGAAGA  100

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  150

seq1  AAGAAGAACCTTTAAGTCACACCATATACAAGTAAGTCAGAATGGGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAACCTTTAAGTCACACCATATACAAGTAAGTCAGAATGGGCTGA  200

seq1  CTGCAGAGTCAGGGAGATGGCTCAGCTCACAGAGTACTTGCCGAGCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGTCAGGGAGATGGCTCAGCTCACAGAGTACTTGCCGAGCAATT  250

seq1  ATGAGGACCTGAGTTTGGTCCCTAGTAATGAGCACTGTGCAGTGGTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGACCTGAGTTTGGTCCCTAGTAATGAGCACTGTGCAGTGGTGCCT  300

seq1  TCATACAACCCTATCCCTGGCTGACGTAAGTGGCTCCCTGGAGTCTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAACCCTATCCCTGGCTGACGTAAGTGGCTCCCTGGAGTCTCTGA  350

seq1  CCAGCGAAGCTTAGGTGAGTCAGAGAGTCCAAGGCCAATGAGAGAACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGAAGCTTAGGTGAGTCAGAGAGTCCAAGGCCAATGAGAGAACCTG  400

seq1  TCTCAAAAACAAGATAGATGGCATCCTGAGGTGGGACCCTGATGTTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAACAAGATAGATGGCATCCTGAGGTGGGACCCTGATGTTGTAT  450

seq1  TCTAGTTTCTGTATATATGTACACTCTCTTCCTGCCCCCTCAAAAGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTCTGTATATATGTACACTCTCTTCCTGCCCCCTCAAAAGGCAC  500

seq1  ACTAAACATTAAATGGATCACAGACTGAAATACAAGAGCTGAAACTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACATTAAATGGATCACAGACTGAAATACAAGAGCTGAAACTGGAA  550

seq1  AACCTTTGGGGACTAAGCAGGAGAATTC  578
      ||||||||||||||||||||||||||||
seq2  AACCTTTGGGGACTAAGCAGGAGAATTC  578

seq1: chr18_36193428_36194123
seq2: B6Ng01-329A16.g_65_760

seq1  GAATTCCTTAGGAGGTGAGAAGTCTCTGCCTTAGCCTTCTACTGAGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGGAGGTGAGAAGTCTCTGCCTTAGCCTTCTACTGAGCATA  50

seq1  ACAAGAGAGCCCTTGGCCTTATAGTTAGGCGTTAGCCATTGGCTATGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGCCCTTGGCCTTATAGTTAGGCGTTAGCCATTGGCTATGATA  100

seq1  GATAATCACGAAAACCCTGTGGCGTCTAATCTAGAGGAATACGGAAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCACGAAAACCCTGTGGCGTCTAATCTAGAGGAATACGGAAGGGT  150

seq1  AGTGGCTTGTGGGTTGCTCACCGGTGTTTCTCTGGGCCTGTGGTATCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTGTGGGTTGCTCACCGGTGTTTCTCTGGGCCTGTGGTATCCCT  200

seq1  GGGTTCGGGAAGGAGGGAACTGGACACTGTGGTGGTGGAGCACAGGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCGGGAAGGAGGGAACTGGACACTGTGGTGGTGGAGCACAGGTGCA  250

seq1  CACGCATTTGGAGGTCTGGCTGGGAAGTACAACTATTGAGCATGGGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCATTTGGAGGTCTGGCTGGGAAGTACAACTATTGAGCATGGGCAAT  300

seq1  AGCAATGCATGCTCACTCGATTGAATAGTGTGGCTTAGGGGATGAGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGCATGCTCACTCGATTGAATAGTGTGGCTTAGGGGATGAGCCCC  350

seq1  TCATTACTATCTCTGATCCCTGACCCTTGTCCCTAGTCACTTTAGCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTATCTCTGATCCCTGACCCTTGTCCCTAGTCACTTTAGCCCAG  400

seq1  GAAGATGGAGGAAGTAGCCAAGGCTTCCCAACTGACTCCAGCCAGGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGAGGAAGTAGCCAAGGCTTCCCAACTGACTCCAGCCAGGCTCA  450

seq1  GCTCTTCTTCCTTTGCTCCTGGGCCCTGATGTGGGGGATTAAAAGTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTTCCTTTGCTCCTGGGCCCTGATGTGGGGGATTAAAAGTGAGT  500

seq1  GAAGTGATTCTTTTTTCAAACAGAAGCACCTTTGGGAGTAGAGGATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATTCTTTTTTCAAACAGAAGCACCTTTGGGAGTAGAGGATAAAG  550

seq1  ACCCAGAAGTGGAAATGACTCTTGGGTTCCACAAAGTAACAGGAAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAGTGGAAATGACTCTTGGGTTCCACAAAGTAACAGGAAAGGAA  600

seq1  CAGGCTTGACTGTGTCCATTGTCTGCCACTAGCTAGGCTCTTAGAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGACTGTGTCCATTGTCTGCCACTAGCTAGGCTCTTAGAGGCAG  650

seq1  GGAAACCATGTATATAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCATGTATATAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  696