BAC Information

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BAC

Clone NameB6Ng01-330C07
Chromosome18 (Build37)
Map Location 67,004,831 - 67,005,966
singlet/doubletsinglet
Overlap genenone
Upstream geneGrp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
Downstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330C07.bB6Ng01-330C07.g
ACCGA116905GA116906
length7331,118
definitionB6Ng01-330C07.b B6Ng01-330C07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaccttttttggcatctgggattaaaatgtacaccactatgtttg
actttcttgcatagcttctaggatcagactcagctcctcctacttgccca
aaagcactcggctgattgagccatcagacagtcggggcagtctcacccgt
gccttcatcatcagggtcagctccactgtttcgcccaggcgaggtgcagg
gcctgctttcctgagtgctaatgccagtgaggggcatggatagctctcct
gctctcatgaccctagggtcagttctcccaggtactccaggtggtgaggt
gggtagaaggaagacatgcactcataccgcctcccaccagacagagccag
ctctactgtgttgcccagacgaggtgcagggccccactctcccaagggct
gcatctgtggaaaacaaggccagcccactggttctcatgccttcagggcc
agttctccccactgccgcaggtgatgaggagcaagggggcagggggcttt
atctgcccctatccaggtcacttcaagacagagaagtggctgggccagtc
ctccctcacaccctgcgggattggctctgctgtgctgtccaggcgaggca
tagggggtcctctctcgtgtgtgtcagctggtaaggcacagtgctagctc
tcctgagcttatgaccctgtgggcagctttcctgactgccagaggtggca
aggagtggcaggatgggggtgaaggtggaggtg
gaattcttcagttcccatcttagtttatgttccaatatgagagccaagga
atctgataccacttccaggagtttgctggaaattagctcttccttttagg
gttcttattctttttttattctttcaccaaagttctcagccatctttgta
agagttccagtctgagataaaacatgctagatccctaattagaaaattag
ccggatattattcctgtcttttgctgctgagatgattgacatttcattct
tcaaaatgcatttttcatttagcttcaatcataacaccaccttccctggt
gtttcttttgtggttttcttttgagactgtgtcatgggtcccagggtatc
ttcaaactctatgtagccaaagctggctttaaactcctaatcttcccact
ttccatttccctgaactgggagtatttgctatcacacatgctgtactatc
tctattaactctatgttcattacccactgttcattaagcccttaaattgt
atttctttttattacatttgtttgtttatgagttgttcatctatttactg
cgtgcaagagggagcgcgtacagcacagagtgcaagcagtggtcaggtga
caactttcaggagttgggtttctttttgcaccacgtgggtcatgagcagt
gaaatcatcaaggcctggctgcaaagtgccttaacacactgagctgtctc
agtgtcctttaaactatgcttctgccaagccagtccacctgctttccttg
cttctgcctttatgttttccattgggatgcacttagcaagtttctgttaa
gctcttaccctaaccgactcccattctaggctcttggactccatcgctga
agaaaatgaagtcctttgtactctcctaatattcggtgttcgtgaatgga
gggaaacaataacatgattgataccttggtgatcagtttgatctgttgat
tattgtgagaagatagtgagcaatgatagtactcactggcgggctgtgac
tttaaaatggcttccccagtaccattaatgaggtctatctcagcatactt
gagggtggagagtcagctgagcgccatttaggcatagttttcctgaaagt
agtgagagcaatgcgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_67004831_67005966
seq2: B6Ng01-330C07.g_66_1183

seq1  GAATTCTTCAGTTCCCATCTTAGTTTATGTTCCAATATGAGAGCCAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTTCCCATCTTAGTTTATGTTCCAATATGAGAGCCAAGGA  50

seq1  ATCTGATACCACTTCCAGGAGTTTGCTGGAAATTAGCTCTTCCTTTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATACCACTTCCAGGAGTTTGCTGGAAATTAGCTCTTCCTTTTAGG  100

seq1  GTTCTTATTCTTTTTTTATTCTTTCACCAAAGTTCTCAGCCATCTTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATTCTTTTTTTATTCTTTCACCAAAGTTCTCAGCCATCTTTGTA  150

seq1  AGAGTTCCAGTCTGAGATAAAACATGCTAGATCCCTAATTAGAAAATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCAGTCTGAGATAAAACATGCTAGATCCCTAATTAGAAAATTAG  200

seq1  CCGGATATTATTCCTGTCTTTTGCTGCTGAGATGATTGACATTTCATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATATTATTCCTGTCTTTTGCTGCTGAGATGATTGACATTTCATTCT  250

seq1  TCAAAATGCATTTTTCATTTAGCTTCAATCATAACACCACCTTCCCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGCATTTTTCATTTAGCTTCAATCATAACACCACCTTCCCTGGT  300

seq1  GTTTCTTTTGTGGTTTTCTTTTGAGACTGTGTCATGGGTCCCAGGGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTGTGGTTTTCTTTTGAGACTGTGTCATGGGTCCCAGGGTATC  350

seq1  TTCAAACTCTATGTAGCCAAAGCTGGCTTTAAACTCCTAATCTTCCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTCTATGTAGCCAAAGCTGGCTTTAAACTCCTAATCTTCCCACT  400

seq1  TTCCATTTCCCTGAACTGGGAGTATTTGCTATCACACATGCTGTACTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTCCCTGAACTGGGAGTATTTGCTATCACACATGCTGTACTATC  450

seq1  TCTATTAACTCTATGTTCATTACCCACTGTTCATTAAGCCCTTAAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAACTCTATGTTCATTACCCACTGTTCATTAAGCCCTTAAATTGT  500

seq1  ATTTCTTTTTATTACATTTGTTTGTTTATGAGTTGTTCATCTATTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTTATTACATTTGTTTGTTTATGAGTTGTTCATCTATTTACTG  550

seq1  CGTGCAAGAGGGAGCGCGTACAGCACAGAGTGCAAGCAGTGGTCAGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCAAGAGGGAGCGCGTACAGCACAGAGTGCAAGCAGTGGTCAGGTGA  600

seq1  CAACTTTCAGGAGTTGGGTTTCTTTTTGCACCACGTGGGTCATGAGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCAGGAGTTGGGTTTCTTTTTGCACCACGTGGGTCATGAGCAGT  650

seq1  GAAATCATCAAGGCCTGGCTGCAAAGTGCCTTAACACACTGAGCTGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATCAAGGCCTGGCTGCAAAGTGCCTTAACACACTGAGCTGTCTC  700

seq1  AGTGTCCTTTAAACTATGCTTCTGCCAAGCCAGTCCACCTGCTTTCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTTTAAACTATGCTTCTGCCAAGCCAGTCCACCTGCTTTCCTTG  750

seq1  CTTCTGCCTTTATGTTTTCCATTGGGATGCACTTAGCAAGTTTCTGTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTTTATGTTTTCCATTGGGATGCACTTAGCAAGTTTCTGTTAA  800

seq1  GCTCTTACCCTAACCGACTCCCATTCTAGGCTCTTGGACTCCATCGCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACCCTAACCGACTCCCATTCTAGGCTCTTGGACTCCATCGCTGA  850

seq1  AGAAAATGAAGTCCTTTGTACTCTCCTAATATTCGGTGTTCGTGAATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGAAGTCCTTTGTACTCTCCTAATATTCGGTGTTCGTGAATGGA  900

seq1  GGGAAACAATAAACATGATTGATACCTTGGTGATCAGTTTGATCTGTTGA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACAAT-AACATGATTGATACCTTGGTGATCAGTTTGATCTGTTGA  949

seq1  TTATTGTGAGAAAGATAGTGAGCAATGATAGTACTCACTGGCGGGCTTGT  1000
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  TTATTGTGAG-AAGATAGTGAGCAATGATAGTACTCACTGGCGGGC-TGT  997

seq1  GACTTTAAAAATGGCTTCCCCAAGTAACCATTAATGAGGGTCTATCTCAG  1050
      |||||| |||||||||||||| ||| ||||||||||| ||||||||||||
seq2  GACTTT-AAAATGGCTTCCCC-AGT-ACCATTAATGA-GGTCTATCTCAG  1043

seq1  CAATACTTGAAGGGGTGAGGAAGTCAGCTGTATGCGCATTTAGGGCATAG  1100
      | ||||||||  ||||| |  |||||||||   || |||||| |||||||
seq2  C-ATACTTGA--GGGTG-GAGAGTCAGCTGAGCGC-CATTTA-GGCATAG  1087

seq1  TTTTCCTGAAAGGTAGTTGGAAGAGCAATGCAGAAT  1136
      ||||||||||| |||||    |||||||||| ||||
seq2  TTTTCCTGAAA-GTAGT---GAGAGCAATGC-GAAT  1118