BAC Information

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BAC

Clone NameB6Ng01-330C16
Chromosome18 (Build37)
Map Location 69,824,590 - 69,941,810
singlet/doubletdoublet
Overlap geneTcf4
Upstream geneLOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330C16.bB6Ng01-330C16.g
ACCGA116923GA116924
length1,2151,136
definitionB6Ng01-330C16.b B6Ng01-330C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,824,590 - 69,825,807)(69,940,656 - 69,941,810)
sequence
gaattcccctgtctctgataatctccttgattatcaaatatccctgagag
tagattagcagcctcaatggaaagatgtttctttgatattcctgtcatac
tttttaaaagaatactttaaggagacaaaaagagaagaagaagaacttta
aaaagttctctcaactagggaggctttgttcaaccgcagcttcagagacc
ctaagctcacatcgcagttgtattctgccttcattcagcaacagtcagac
tctgtgcagccagcgccatgagaccatttcacctggagagcactgactag
aactccagccccacagacaccaccgggggttccactaggtacattctctt
tgatttcccataacctctttattcaaattcaggccgcatctacttagatg
tcaccccagccctctgctgtctgcgctgctggagcaaacaaacccaacac
acctcctgagcatcctgaagccatgtgctgtggagcaaataggattttag
agtctaggatttcagggcaaacctgtcctggccaacctgtagtacagtgc
atgcctccatttaggacaaggtaggattacagagtaactcgggaaattac
cagcctaggagaggactgaacaaaggcaggagtccgtgcagggctctaac
agttccagagaggcgagctagagaaaccagagcataaacacggtctcaaa
agaattaaagaaaagaaaagtgcttatgtgctcaaagagcagcaaggaaa
ttgcttgctgatccagccttgcagctggtagtccaggctgctccaagccc
ctcccccacggagcagcagcattcggttggagcattgcatgggagagtcc
acaggaagagtgagttttcatgtgtgtatgtatatatatatatatatata
tattttacacccaaattaaattaactcatggaattttccacccttgggta
ttaaagtagcagtccatgaagtaatatggttatgtcattcataccaaaac
agaaatactggtgtagcttggcactgtttaaaagcaaactgaagcctggc
attttaatatttcttcaaatttccctggcttgttgttgttagtttacttt
tattggtgcgttaattttcaaatccagtatttagcggattaaaaaaacat
tgttgtttcaaacaaccgaaacaatcaaaaaggccaagtgaaacatgttc
gaaggcggtcaagaa

gaattcctcccagagtgtatacttgatgatacttcttattgctaattcgg
aagtccaggattgctggcaaaaccccaatgctgtgctcatgtcttccact
agccacccactcaactggctttattgcaaggtggggaatgctaattctcc
actatcaccagtggggcccccttcctatatgtactgattgtctgggacaa
atgaactccttaaaccccttcacacagttttccaaagtccattcatttta
aaatacttagttctggtgtctggaatcactgaggcaactgtgtggcaggt
cctctggatggaaactgaggtcaaggataacaaaccagggtcagcagctc
tcttgtctttgtctttgtctgtttatcataagtcttctctttggtccttt
ggggattcatgcctacaattaagatttgagcccatggttcaacactcatt
gtgctgactagttttatgtcaacttgacacagctgaagtaatctgagggg
aaggaacagcaagagaaaacacctacgtaagatcaggctgtaggcaagcc
tgccaagtattttcttgattattgattgctaggggagggcccagcccatt
gtgggttgggccgtccttgggctaaaggtcttgagttctatttaaaaaaa
aaaaaaaagtaggctgagcaaatcagtttgagcaacccagtaagtagcac
ccctccatggcttctgcatcagctcctgctcccaggttccttccccattt
gagttcctgtcttgacctcctttgatgaactgtgaagtggaagtggaagc
cctataaacccttccctccccagcttgctttttggtcatggtatcacagc
aatacaacactgagacacccatagcatacttcagtctagacagtgcaaca
ctcagcacgttggtgccagtcaattaatgcaaattaatacaaatgtgtca
tgctcccacagacaaataattagagatggctcttgtgccttcctggtctc
ttccctttagttagcatcatggaggtggggagaagaacagccagcagaga
ctggcaagacatcagtgtcacctcctgctgatgctactttgcatcagtca
gtgtcaatagctgctgaaagataacacagactgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69824590_69825807
seq2: B6Ng01-330C16.b_49_1263

seq1  GAATTCCCCTGTCTCTGATAATCTCCTTGATTATCAAATATCCCTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGTCTCTGATAATCTCCTTGATTATCAAATATCCCTGAGAG  50

seq1  TAGATTAGCAGCCTCAATGGAAAGATGTTTCTTTGATATTCCTGTCATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAGCAGCCTCAATGGAAAGATGTTTCTTTGATATTCCTGTCATAC  100

seq1  TTTTTAAAAGAATACTTTAAGGAGACAAAAAGAGAAGAAGAAGAACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAGAATACTTTAAGGAGACAAAAAGAGAAGAAGAAGAACTTTA  150

seq1  AAAAGTTCTCTCAACTAGGGAGGCTTTGTTCAACCGCAGCTTCAGAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCTCTCAACTAGGGAGGCTTTGTTCAACCGCAGCTTCAGAGACC  200

seq1  CTAAGCTCACATCGCAGTTGTATTCTGCCTTCATTCAGCAACAGTCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCACATCGCAGTTGTATTCTGCCTTCATTCAGCAACAGTCAGAC  250

seq1  TCTGTGCAGCCAGCGCCATGAGACCATTTCACCTGGAGAGCACTGACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAGCCAGCGCCATGAGACCATTTCACCTGGAGAGCACTGACTAG  300

seq1  AACTCCAGCCCCACAGACACCACCGGGGGTTCCACTAGGTACATTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGCCCCACAGACACCACCGGGGGTTCCACTAGGTACATTCTCTT  350

seq1  TGATTTCCCATAACCTCTTTATTCAAATTCAGGCCGCATCTACTTAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCCATAACCTCTTTATTCAAATTCAGGCCGCATCTACTTAGATG  400

seq1  TCACCCCAGCCCTCTGCTGTCTGCGCTGCTGGAGCAAACAAACCCAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCAGCCCTCTGCTGTCTGCGCTGCTGGAGCAAACAAACCCAACAC  450

seq1  ACCTCCTGAGCATCCTGAAGCCATGTGCTGTGGAGCAAATAGGATTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGAGCATCCTGAAGCCATGTGCTGTGGAGCAAATAGGATTTTAG  500

seq1  AGTCTAGGATTTCAGGGCAAACCTGTCCTGGCCAACCTGTAGTACAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGATTTCAGGGCAAACCTGTCCTGGCCAACCTGTAGTACAGTGC  550

seq1  ATGCCTCCATTTAGGACAAGGTAGGATTACAGAGTAACTCGGGAAATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCATTTAGGACAAGGTAGGATTACAGAGTAACTCGGGAAATTAC  600

seq1  CAGCCTAGGAGAGGACTGAACAAAGGCAGGAGTCCGTGCAGGGCTCTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGGAGAGGACTGAACAAAGGCAGGAGTCCGTGCAGGGCTCTAAC  650

seq1  AGTTCCAGAGAGGCGAGCTAGAGAAACCAGAGCATAAACACGGTCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGAGAGGCGAGCTAGAGAAACCAGAGCATAAACACGGTCTCAAA  700

seq1  AGAATTAAAGAAAAAGAAAAGTGCTTATGTGCTCAAAGAGCAGCAAGGAA  750
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAAG-AAAAGAAAAGTGCTTATGTGCTCAAAGAGCAGCAAGGAA  749

seq1  ATTGCTTGCTGATCCAGCCTTGCAGCTGGTAGTCCAGGCTGCTCCAAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGCTGATCCAGCCTTGCAGCTGGTAGTCCAGGCTGCTCCAAGCC  799

seq1  CCTCCCCCACGGAGCAGCAGCATTCGGTTGGAGCATTGCATGGGAGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCACGGAGCAGCAGCATTCGGTTGGAGCATTGCATGGGAGAGTC  849

seq1  CACAGGAAGAGTGAGTTTTCATGTGTGTATGTATATATATATATATATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAGAGTGAGTTTTCATGTGTGTATGTATATATATATATATATAT  899

seq1  ATATTTTACACCCAAATTAAATTAACTCATGGAATTTTCCACCCTTGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTACACCCAAATTAAATTAACTCATGGAATTTTCCACCCTTGGGT  949

seq1  ATTAAAGTAGCAGTCCATGAAGTAATATGGTTATGTCATTCATACCAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTAGCAGTCCATGAAGTAATATGGTTATGTCATTCATACCAAAA  999

seq1  CAGAAAATACTGGTGTAGCTTGGCACTGTTTAAAAGCCAAACTGAGGCCC  1050
      ||| |||||||||||||||||||||||||||||||| |||||||| | ||
seq2  CAG-AAATACTGGTGTAGCTTGGCACTGTTTAAAAG-CAAACTGAAG-CC  1046

seq1  TGGCCATTTTATATTTCTTCAAA-TTCCCTGGC-TGTTG-TGTTAGTTTT  1097
      ||||  ||| ||||||||||||| ||||||||| ||||| ||||||||| 
seq2  TGGCATTTTAATATTTCTTCAAATTTCCCTGGCTTGTTGTTGTTAGTTT-  1095

seq1  AACTTTTATTGTGGCCGTAAATTTTTCAAATCAAGTATTTTAGCCGATTA  1147
       ||||||||||  ||  |||  |||||||||| |||| |||||| |||||
seq2  -ACTTTTATTGGTGCGTTAA--TTTTCAAATCCAGTA-TTTAGCGGATTA  1141

seq1  AAAAAACAT--GTGTTTCAAACAAACGAAACAAAACCAAAAAAGCAAAGT  1195
      |||||||||   |||||||||||| ||||||  || |||||| || ||||
seq2  AAAAAACATTGTTGTTTCAAACAACCGAAAC--AATCAAAAAGGCCAAGT  1189

seq1  G-AACAGGTTCG-AGGCGG-CAAGAA  1218
      | |||| ||||| |||||| ||||||
seq2  GAAACATGTTCGAAGGCGGTCAAGAA  1215


seq1: chr18_69940656_69941810
seq2: B6Ng01-330C16.g_68_1203 (reverse)

seq1  GAGCAG-CTGTGGTTATCTCTCAGCAGCTATTTGGAACACTGACTGATGC  49
      |||||| |||| ||||||| ||||||||||||    ||||||||||||||
seq2  GAGCAGTCTGT-GTTATCTTTCAGCAGCTATT---GACACTGACTGATGC  46

seq1  AAAGTAGACACTCAGCAGGAAGTGACACCTTGATGTCCTTGCCCAGTCTC  99
      ||||||| || ||||||||| |||||||  |||||| |||| ||||||||
seq2  AAAGTAG-CA-TCAGCAGGAGGTGACAC--TGATGT-CTTG-CCAGTCTC  90

seq1  TGCCTGGCCTGTTC-TCTCCCCACCTTCCATGATGCCTAACTAAAGGGAA  148
      || |||| |||||| |||||||||| ||||||||| ||||||||||||||
seq2  TG-CTGG-CTGTTCTTCTCCCCACC-TCCATGATG-CTAACTAAAGGGAA  136

seq1  GAGAACCAGGAAGGCAACAGAGCCATCTTCTAATTATTTGTCTGTGGGAG  198
      ||| ||||||||||||  ||||||||| ||||||||||||||||||||||
seq2  GAG-ACCAGGAAGGCACAAGAGCCATC-TCTAATTATTTGTCTGTGGGAG  184

seq1  CATGACCACAATTTGTATTTAATTTGCATTTAATTGACTGGCACCAACGT  248
      ||||| ||| ||||||| |||||||||| |||||||||||||||||||||
seq2  CATGA-CAC-ATTTGTA-TTAATTTGCA-TTAATTGACTGGCACCAACGT  230

seq1  GCTGAGTGTTGCACTGTCTAGACTGAAGTATGCTATGGGTGTCTCAGTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTGAGTGTTGCACTGTCTAGACTGAAGTATGCTATGGGTGTCTCAGTG-  279

seq1  TTGTATTGCTGTGATACCATGACCAAAAAGCAAGCTGGGGAGGGAAGGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGCTGTGATACCATGACCAAAAAGCAAGCTGGGGAGGGAAGGGT  329

seq1  TTATAGGGCTTCCACTTCCACTTCACAGTTCATCAAAGGAGGTCAAGACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGGCTTCCACTTCCACTTCACAGTTCATCAAAGGAGGTCAAGACA  379

seq1  GGAACTCAAATGGGGAAGGAACCTGGGAGCAGGAGCTGATGCAGAAGCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAAATGGGGAAGGAACCTGGGAGCAGGAGCTGATGCAGAAGCCA  429

seq1  TGGAGGGGTGCTACTTACTGGGTTGCTCAAACTGATTTGCTCAGCCTACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGTGCTACTTACTGGGTTGCTCAAACTGATTTGCTCAGCCTACT  479

seq1  TTTTTTTTTTTTTTAAATAGAACTCAAGACCTTTAGCCCAAGGACGGCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTAAATAGAACTCAAGACCTTTAGCCCAAGGACGGCCC  529

seq1  AACCCACAATGGGCTGGGCCCTCCCCTAGCAATCAATAATCAAGAAAATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACAATGGGCTGGGCCCTCCCCTAGCAATCAATAATCAAGAAAATA  579

seq1  CTTGGCAGGCTTGCCTACAGCCTGATCTTACGTAGGTGTTTTCTCTTGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGGCTTGCCTACAGCCTGATCTTACGTAGGTGTTTTCTCTTGCT  629

seq1  GTTCCTTCCCCTCAGATTACTTCAGCTGTGTCAAGTTGACATAAAACTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCCCCTCAGATTACTTCAGCTGTGTCAAGTTGACATAAAACTAG  679

seq1  TCAGCACAATGAGTGTTGAACCATGGGCTCAAATCTTAATTGTAGGCATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACAATGAGTGTTGAACCATGGGCTCAAATCTTAATTGTAGGCATG  729

seq1  AATCCCCAAAGGACCAAAGAGAAGACTTATGATAAACAGACAAAGACAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCAAAGGACCAAAGAGAAGACTTATGATAAACAGACAAAGACAAA  779

seq1  GACAAGAGAGCTGCTGACCCTGGTTTGTTATCCTTGACCTCAGTTTCCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGAGCTGCTGACCCTGGTTTGTTATCCTTGACCTCAGTTTCCAT  829

seq1  CCAGAGGACCTGCCACACAGTTGCCTCAGTGATTCCAGACACCAGAACTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGACCTGCCACACAGTTGCCTCAGTGATTCCAGACACCAGAACTA  879

seq1  AGTATTTTAAAATGAATGGACTTTGGAAAACTGTGTGAAGGGGTTTAAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTAAAATGAATGGACTTTGGAAAACTGTGTGAAGGGGTTTAAGG  929

seq1  AGTTCATTTGTCCCAGACAATCAGTACATATAGGAAGGGGGCCCCACTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTTGTCCCAGACAATCAGTACATATAGGAAGGGGGCCCCACTGG  979

seq1  TGATAGTGGAGAATTAGCATTCCCCACCTTGCAATAAAGCCAGTTGAGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGGAGAATTAGCATTCCCCACCTTGCAATAAAGCCAGTTGAGTG  1029

seq1  GGTGGCTAGTGGAAGACATGAGCACAGCATTGGGGTTTTGCCAGCAATCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTAGTGGAAGACATGAGCACAGCATTGGGGTTTTGCCAGCAATCC  1079

seq1  TGGACTTCCGAATTAGCAATAAGAAGTATCATCAAGTATACACTCTGGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCCGAATTAGCAATAAGAAGTATCATCAAGTATACACTCTGGGA  1129

seq1  GGAATTC  1155
      |||||||
seq2  GGAATTC  1136


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