BAC Information

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BAC

Clone NameB6Ng01-332B21
Chromosome18 (Build37)
Map Location 54,317,268 - 54,318,471
singlet/doubletsinglet
Overlap genenone
Upstream geneSnx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332B21.bB6Ng01-332B21.g
ACCGA118312GA118313
length1,2101,184
definitionB6Ng01-332B21.b B6Ng01-332B21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgacaaaaccaaattcacacattatctttccaagaatccagc
ccttcaaaggataataacagaaaaaaaaacaatacaaggacagaaaccac
gccctagaaaaagcaagaaaataattcttcaacaaacctaaaaaaagaca
gccacaagaacagaatgccaactctaaaaacaaaaatattaggatgcaag
aattacttatccttaatatctcttaatatcaatggactcaattgcccaat
aaaaagacatagactaacagactggcgacacaaacaggacccaacatttt
gctgcttacagagacatagactaacagactggtgacacaaacaggaccca
acattttgctgcttacaggaaacccatctcagggaaaaagagagacacta
cctcagaatgaaaggttggaaaacaattttccaagcaaatggtctgaaga
aacaagcaggagtagccattctaatatcgaataaaatcaactttcaacca
aaagttatcaaaaaagacaaggagggacaattcatactcatcaaagataa
aatcctccaagaggaactctcaattttgaatttctatgctccaaatgcaa
gggcagccacattcattaaagaaactatagtaaagctcaaagcacacatt
gcacctcacacaataatagtgggagacttcaacacaccactttcatcaat
ggacagatcgtggaaacagaaactaaataggtatagagtgaaactaacag
aagttatgaaacaaatggatttaacagatatttacaaaacattatatcct
aaaacaaaaggatataccttcttctcagcacctcatggtacctcctccaa
aattgacaatataactggtcacaaaacaggcctcaacagatacaaaaata
ttgaaattgtcccatgtatcctatcagatcaccatggaataaggctgatc
ttcaataacaacataaataatagaaagccaaaattcacgtggaacctgaa
caacactcttctcaatgataccttagtcagagaataagaaagaaattaag
actttttagcgtttatgaaatgagccacaacatacccaactatggacaca
tgaagcatttctaagagaaaccatagatctgagtgcctcccagacctaag
agagagcacacctagcagcttgacaacacaccctaaatgtcttctggaac
aaaaaggagt

gaattctctcttgctcctcagttgtgaagagtgtctgtagcagttgctga
caagcagctggaggctctgattcaggagaagccttcactttggatttctc
ttgtaacaccagagcacaatcacaagttagggaagcaaagcccaaatttt
aacagtgtaaacaatccattccctttaaacatcaacaccaaaaacattac
ttgctacaaagtttggctgcctgttcctgcacacaaatgcaagaaggtgc
agcccccaatacctcgaagagacactgtcctaaatcctatcttttataag
tctggtttctaggacaagaatttcatagaatattacccaattcaggtgta
tctttagagacctgtctccttgggttgtctcatgccacatgttgtagttc
tgaattactccaacctggagttaccagttttaagccaactttctgttacc
aatgttacaaatttttaatcataattaaccaagaaaatttcttaatttca
agagaggagctccttgttatctgatgaatccaataatcacaagcacagag
atttttgttggaaaaacagccatcagttcccttaccatagaacttgagaa
gctgctggtccctttaagatcagtgtttacaatcagctctgagcagggct
tctccagccacactagacttcgaactacaggtgcagggatccaaagacca
attgatactgtgtatttatttttttcttttctctttcactaaattatccc
cagatagtcagagagtactgcctttctcaaacccgttctctcatgtgtaa
attatctctagttagggaacaaagcacctatgagaattacctttgcttct
ctagattttcacatagctctaaacacatacacaaaaacacacaaaacagg
aaccaacagattcagacccttttacgtcctccacaagcaggcaaagaatt
agatgatttcggagggagagcttccatccacttcaacaacagaactcggt
ccctctactgatctctggagactacaggcatccctggctctctacttccc
aggcgttccctaggatggcagctgtgttctctagccatctgcaaccacag
ttctcgtcttacagctgaaaggacgctgcaacaggaagcacatggcttca
gaaaactcattcgactacaaatcaagagacaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54317268_54318471
seq2: B6Ng01-332B21.g_66_1249

seq1  GAATTCTCTCTTGCTCCTCAGTTGTGAAGAGTGTCTGTAGCAGTTGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTGCTCCTCAGTTGTGAAGAGTGTCTGTAGCAGTTGCTGA  50

seq1  CAAGCAGCTGGAGGCTCTGATTCAGGAGAAGCCTTCACTTTGGATTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGCTGGAGGCTCTGATTCAGGAGAAGCCTTCACTTTGGATTTCTC  100

seq1  TTGTAACACCAGAGCACAATCACAAGTTAGGGAAGCAAAGCCCAAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACACCAGAGCACAATCACAAGTTAGGGAAGCAAAGCCCAAATTTT  150

seq1  AACAGTGTAAACAATCCATTCCCTTTAAACATCAACACCAAAAACATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTAAACAATCCATTCCCTTTAAACATCAACACCAAAAACATTAC  200

seq1  TTGCTACAAAGTTTGGCTGCCTGTTCCTGCACACAAATGCAAGAAGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAAAGTTTGGCTGCCTGTTCCTGCACACAAATGCAAGAAGGTGC  250

seq1  AGCCCCCAATACCTCGAAGAGACACTGTCCTAAATCCTATCTTTTATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCAATACCTCGAAGAGACACTGTCCTAAATCCTATCTTTTATAAG  300

seq1  TCTGGTTTCTAGGACAAGAATTTCATAGAATATTACCCAATTCAGGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTCTAGGACAAGAATTTCATAGAATATTACCCAATTCAGGTGTA  350

seq1  TCTTTAGAGACCTGTCTCCTTGGGTTGTCTCATGCCACATGTTGTAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAGACCTGTCTCCTTGGGTTGTCTCATGCCACATGTTGTAGTTC  400

seq1  TGAATTACTCCAACCTGGAGTTACCAGTTTTAAGCCAACTTTCTGTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTACTCCAACCTGGAGTTACCAGTTTTAAGCCAACTTTCTGTTACC  450

seq1  AATGTTACAAATTTTTAATCATAATTAACCAAGAAAATTTCTTAATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACAAATTTTTAATCATAATTAACCAAGAAAATTTCTTAATTTCA  500

seq1  AGAGAGGAGCTCCTTGTTATCTGATGAATCCAATAATCACAAGCACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGCTCCTTGTTATCTGATGAATCCAATAATCACAAGCACAGAG  550

seq1  ATTTTTGTTGGAAAAACAGCCATCAGTTCCCTTACCATAGAACTTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTGGAAAAACAGCCATCAGTTCCCTTACCATAGAACTTGAGAA  600

seq1  GCTGCTGGTCCCTTTAAGATCAGTGTTTACAATCAGCTCTGAGCAGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGTCCCTTTAAGATCAGTGTTTACAATCAGCTCTGAGCAGGGCT  650

seq1  TCTCCAGCCACACTAGACTTCGAACTACAGGTGCAGGGATCCAAAGACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCACACTAGACTTCGAACTACAGGTGCAGGGATCCAAAGACCA  700

seq1  ATTGATACTGTGTATTTATTTTTTTCTTTTCTCTTTCACTAAATTATCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATACTGTGTATTTATTTTTTTCTTTTCTCTTTCACTAAATTATCCC  750

seq1  CAGATAGTCAGAGAGTACTGCCTTTCTCAAACCCGTTCTCTCATGTGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGTCAGAGAGTACTGCCTTTCTCAAACCCGTTCTCTCATGTGTAA  800

seq1  ATTATCTCTAGTTAGGGAACAAAGCACCTATGAGAATTACCTTTGCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCTAGTTAGGGAACAAAGCACCTATGAGAATTACCTTTGCTTCT  850

seq1  CTAGATTTTCACATAGCTCTAAACACATACACAAAAACACACAAAACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTTCACATAGCTCTAAACACATACACAAAAACACACAAAACAGG  900

seq1  AACCAACAGATTCAGGACCCTTTTACGTCCTCCACAAGCAGGCAAAAGAA  950
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  AACCAACAGATTCA-GACCCTTTTACGTCCTCCACAAGCAGGC-AAAGAA  948

seq1  TTAGATGATTTCGGAGGGAGAAGCTTCCATCCACTTCAACAACAGAACTC  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAGATGATTTCGGAGGGAG-AGCTTCCATCCACTTCAACAACAGAACTC  997

seq1  GGTCCCTCTAACTGATCTCTGGAGACTACCAGGCATCCCTGGCTCTTCCT  1050
      ||||||||| |||||||||||||||||| |||||||||||||||||  ||
seq2  GGTCCCTCT-ACTGATCTCTGGAGACTA-CAGGCATCCCTGGCTCT--CT  1043

seq1  ACTTCCCAGGGCGTCCCCTAGGATGGCAGCCTGTGGTTCTCCTAGCACAT  1100
      |||||||| ||||| |||||||||||||| |||| ||||| ||||| |||
seq2  ACTTCCCA-GGCGTTCCCTAGGATGGCAG-CTGT-GTTCT-CTAGC-CAT  1088

seq1  CTGCCAACCACAGTCCTCCGGTCCTTACAGCCTGAGAGGACAGCTGCAAA  1150
      ||| |||||||||| |||  || ||||||| |||| ||||| ||||| ||
seq2  CTG-CAACCACAGTTCTC--GT-CTTACAG-CTGAAAGGAC-GCTGC-AA  1131

seq1  CAGAAAGCACATGCGTTTCAGAAAACCCCATCGACTACAAACACAAAGAC  1200
      ||| ||||||||| | |||||||||| |  |||||||||||   | ||||
seq2  CAGGAAGCACATG-GCTTCAGAAAACTCATTCGACTACAAATCAAGAGAC  1180

seq1  ACCC  1204
      ||||
seq2  ACCC  1184


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