BAC Information

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BAC

Clone NameB6Ng01-332J06
Chromosome18 (Build37)
Map Location 90,024,428 - 90,164,059
singlet/doubletdoublet
Overlap geneLOC383320
Upstream geneSocs6, Rttn, Cd226, Dok6
Downstream geneLOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332J06.bB6Ng01-332J06.g
ACCGA118637GA118638
length1,0851,083
definitionB6Ng01-332J06.b B6Ng01-332J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,024,428 - 90,025,503)(90,162,980 - 90,164,059)
sequence
gaattccatttagtataaggttgtattaattaaaccaaatatagtgattg
ttggcaatgtagaaagttttatatatatgggggaaacattcatgaattct
cgattttatttcccatatttttctatgaacataatcctttaatctacttt
atgaactgtcataattagcttttgaaaaagggagtagaaacccttgttca
atggatcaaaatgaaaatatatttagaaaatttacaattaggcagcataa
aaaatttctgttatattcggggacttagtttgaatttttagatatgattc
taaaagtaccaacaaattctaaagcaaacaatatagaacctctcaaactt
taataattttcttttagttgaaaaagtaaaccccaaacgagatggtaaat
ttataacataaatatttaggtgataaacatctagtaatgtaactgaataa
agaaattttagatttcaataaaacatattcaatgttgttaagacagctat
gcccctcacactaatcacagattctacttcatcctggtcatagtcttttg
agacatttatgggaacagaagttgccaaaaactctgcggagagtagtctg
cacaggtgagagtgtgcactacagaagctaacagcttctgggacaggaag
aagccacagagcttctgaggtaacccacttttcaggccccagacatccag
gtaccttcccggccagaggagatgtgtctgcccggccagggagggctttg
cctgagcatcagtggcagacatcttggttccaggactttgccgtagtttt
cacaggtaagagtgtggactacagaagctaacagcttctgtgacaggcca
aaacaacacagcttctgggacaggtcctgttttgggccttcatcttcagc
caggagggaggtccaaacactagatatctgtgcaccttccctgtaagagg
agagcttgcctgcagggagtgctctgaacactgaaactcagaggagagag
ctagtctcccagtctgctgatagaggctaaagaatcacagaggacatctt
ctaccagaagacaactaaatcactactcagagatt

gaattctagaaaactagtgggtagcagaactccatccacttcacatgact
gatttcatttctgcaaaataacattgattctatttaagttacataataaa
tttgaattgtaattaatggataattttatctctatttaattacaaattaa
attgtatttacacattttccttgatgtagattatatccataaagactttg
gtatacttatataacttagtttgcacctttattctggttgtcaacttgat
aagatgtagaatcactttagagaccaatctctgagcatgtctgtaatcta
ggttatgtaaattgagtactctactctaaatattgacagcaatgtttttt
gggaaagggaccagaagtgattagaaaagagaaagccaaatgagcactat
caaacacatctctctgatttttttttaaacttcagatacaaagccatggg
aggagaggcccttgatattgtgaagatcatatgccccagcacaggggaat
gccagggccaggaaccagaaattggtgggttggggaacagggaatagggg
gctttggggatagcatttgaaatgtaattgaagaaaatatctaataaaca
ataagtatgtatgaaagcactgtctcaaatgaaaataaaaataggcatta
aataataaatcaaaaaattcaagaatcaacaaacaagcaaataaacaaac
aaaaacaaaaacaaagccatctactctaaattcctgccaccaggctttcc
ctaccacagtgaatggtatgtaaaatgaaagccaagataagtcctttctt
attgaacttgcttttgtcaaggtgtttttatcaaagttatatgacaagta
actgggtatatttagtaaaatattattctattgtttagatttataagagc
ttattttccctggaaaaggattagtattacaggcccccagacaatagtag
ttcctccaggccctagcacaagtcactccatactggaagtacgacttcag
accagaaaactcaatatggtagacagcaccaccagccagtgaaaacaagg
attattatcaaagtttcatagtcttgggaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_90024428_90025503
seq2: B6Ng01-332J06.b_43_1114

seq1  GAATTCCATTTAGTATAAGGTTGTATTAATTAAACCAAATATAGTGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAGTATAAGGTTGTATTAATTAAACCAAATATAGTGATTG  50

seq1  TTGGCAATGTAGAAAGTTTTATATATATGGGGGAAACATTCATGAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAATGTAGAAAGTTTTATATATATGGGGGAAACATTCATGAATTCT  100

seq1  CGATTTTATTTCCCATATTTTTCTATGAACATAATCCTTTAATCTACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTATTTCCCATATTTTTCTATGAACATAATCCTTTAATCTACTTT  150

seq1  ATGAACTGTCATAATTAGCTTTTGAAAAAGGGAGTAGAAACCCTTGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGTCATAATTAGCTTTTGAAAAAGGGAGTAGAAACCCTTGTTCA  200

seq1  ATGGATCAAAATGAAAATATATTTAGAAAATTTACAATTAGGCAGCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCAAAATGAAAATATATTTAGAAAATTTACAATTAGGCAGCATAA  250

seq1  AAAATTTCTGTTATATTCGGGGACTTAGTTTGAATTTTTAGATATGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTGTTATATTCGGGGACTTAGTTTGAATTTTTAGATATGATTC  300

seq1  TAAAAGTACCAACAAATTCTAAAGCAAACAATATAGAACCTCTCAAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTACCAACAAATTCTAAAGCAAACAATATAGAACCTCTCAAACTT  350

seq1  TAATAATTTTCTTTTAGTTGAAAAAGTAAACCCCAAACGAGATGGTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTTCTTTTAGTTGAAAAAGTAAACCCCAAACGAGATGGTAAAT  400

seq1  TTATAACATAAATATTTAGGTGATAAACATCTAGTAATGTAACTGAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACATAAATATTTAGGTGATAAACATCTAGTAATGTAACTGAATAA  450

seq1  AGAAATTTTAGATTTCAATAAAACATATTCAATGTTGTTAAGACAGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTTAGATTTCAATAAAACATATTCAATGTTGTTAAGACAGCTAT  500

seq1  GCCCCTCACACTAATCACAGATTCTACTTCATCCTGGTCATAGTCTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCACACTAATCACAGATTCTACTTCATCCTGGTCATAGTCTTTTG  550

seq1  AGACATTTATGGGAACAGAAGTTGCCAAAAACTCTGCGGAGAGTAGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTATGGGAACAGAAGTTGCCAAAAACTCTGCGGAGAGTAGTCTG  600

seq1  CACAGGTGAGAGTGTGCACTACAGAAGCTAACAGCTTCTGGGACAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGAGAGTGTGCACTACAGAAGCTAACAGCTTCTGGGACAGGAAG  650

seq1  AAGCCACAGAGCTTCTGAGGTAACCCACTTTTCAGGCCCCAGACATCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGAGCTTCTGAGGTAACCCACTTTTCAGGCCCCAGACATCCAG  700

seq1  GTACCTTCCCGGCCAGAGGAGATGTGTCTGCCCGGCCAGGGAGGGCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCCCGGCCAGAGGAGATGTGTCTGCCCGGCCAGGGAGGGCTTTG  750

seq1  CCTGAGCATCAGTGGCAGACATCTTGGTTCCAGGACTTTGCCGTAGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCATCAGTGGCAGACATCTTGGTTCCAGGACTTTGCCGTAGTTTT  800

seq1  CACAGGTAAGAGTGTGGACTACAGAAGCTAACAGCTTCTGTGACAGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTAAGAGTGTGGACTACAGAAGCTAACAGCTTCTGTGACAGGCCA  850

seq1  AAACAACACAGCTTCTGGGACAGGTCCTGTTTTGGGCCTTCATCTTCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACACAGCTTCTGGGACAGGTCCTGTTTTGGGCCTTCATCTTCAGC  900

seq1  CAGGAGGGAGGTCCAAACACTAGATATCTGTGCACCTTCCCTGTAAGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGGAGGTCCAAACACTAGATATCTGTGCACCTTCCCTGTAAGAGG  950

seq1  AGAGCTTGCCTGCAGGGAGTGCTCTGAACACTGAAACTCAGAGGAGAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGCCTGCAGGGAGTGCTCTGAACACTGAAACTCAGAGGAGAGAG  1000

seq1  CTAGTCTCCCAAGTCTGCTGATAGAGGCTAAAAGAATCACAAGAGGAACA  1050
      |||||||||| |||||||||||||||||| |||||||||| ||||||   
seq2  CTAGTCTCCC-AGTCTGCTGATAGAGGCT-AAAGAATCAC-AGAGGA--C  1045

seq1  ATCTCTAACCAG-AGACAACTAAATCA  1076
      ||||   ||||| ||||||||||||||
seq2  ATCTTCTACCAGAAGACAACTAAATCA  1072


seq1: chr18_90162980_90164059
seq2: B6Ng01-332J06.g_67_1149 (reverse)

seq1  GACTTCCCAAGACTATG-AACTTTGATTATAATTCTTTGTTTTCACTTGG  49
      ||||||||||||||||| ||||||||| |||| || |||||||||| |||
seq2  GACTTCCCAAGACTATGAAACTTTGATAATAA-TCCTTGTTTTCAC-TGG  48

seq1  CTGGTGGTGCTGTCTA-CATATTGAGTTTTCTGGTCTG-AGTCGTACTTC  97
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  CTGGTGGTGCTGTCTACCATATTGAGTTTTCTGGTCTGAAGTCGTACTTC  98

seq1  CAGTATGGAGTGACTTGTGCTAGGGCCTGGAGG-ACTACTAATGTCTGGG  146
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  CAGTATGGAGTGACTTGTGCTAGGGCCTGGAGGAACTACTATTGTCTGGG  148

seq1  GGCCTGTAATACTAATCCTTTTCCAGGGAAAATAAGCTCTTATAAATCTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTAATACTAATCCTTTTCCAGGGAAAATAAGCTCTTATAAATCTA  198

seq1  AACAATAGAATAATATTTTACTAAATATA-CCAGTTACTTGTCATATAAC  245
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACAATAGAATAATATTTTACTAAATATACCCAGTTACTTGTCATATAAC  248

seq1  TTTGATAAAAACACCTTGACAAAAGCAAGTTCAATAAGAAAGGACTTATC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAAAAACACCTTGACAAAAGCAAGTTCAATAAGAAAGGACTTATC  298

seq1  TTGGCTTTCATTTTACATACCATTCACTGTGGTAGGGAAAGCCTGGTGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTCATTTTACATACCATTCACTGTGGTAGGGAAAGCCTGGTGGC  348

seq1  AGGAATTTAGAGTAGATGGCTTTGTTTTTGTTTTTGTTTGTTTATTTGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTAGAGTAGATGGCTTTGTTTTTGTTTTTGTTTGTTTATTTGCT  398

seq1  TGTTTGTTGATTCTTGAATTTTTTGATTTATTATTTAATGCCTATTTTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTGATTCTTGAATTTTTTGATTTATTATTTAATGCCTATTTTTA  448

seq1  TTTTCATTTGAGACAGTGCTTTCATACATACTTATTGTTTATTAGATATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTGAGACAGTGCTTTCATACATACTTATTGTTTATTAGATATT  498

seq1  TTCTTCAATTACATTTCAAATGCTATCCCCAAAGCCCCCTATTCCCTGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAATTACATTTCAAATGCTATCCCCAAAGCCCCCTATTCCCTGTT  548

seq1  CCCCAACCCACCAATTTCTGGTTCCTGGCCCTGGCATTCCCCTGTGCTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACCCACCAATTTCTGGTTCCTGGCCCTGGCATTCCCCTGTGCTGG  598

seq1  GGCATATGATCTTCACAATATCAAGGGCCTCTCCTCCCATGGCTTTGTAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGATCTTCACAATATCAAGGGCCTCTCCTCCCATGGCTTTGTAT  648

seq1  CTGAAGTTTAAAAAAAAATCAGAGAGATGTGTTTGATAGTGCTCATTTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTTAAAAAAAAATCAGAGAGATGTGTTTGATAGTGCTCATTTGG  698

seq1  CTTTCTCTTTTCTAATCACTTCTGGTCCCTTTCCCAAAAAACATTGCTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTTTCTAATCACTTCTGGTCCCTTTCCCAAAAAACATTGCTGT  748

seq1  CAATATTTAGAGTAGAGTACTCAATTTACATAACCTAGATTACAGACATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTAGAGTAGAGTACTCAATTTACATAACCTAGATTACAGACATG  798

seq1  CTCAGAGATTGGTCTCTAAAGTGATTCTACATCTTATCAAGTTGACAACC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGATTGGTCTCTAAAGTGATTCTACATCTTATCAAGTTGACAACC  848

seq1  AGAATAAAGGTGCAAACTAAGTTATATAAGTATACCAAAGTCTTTATGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGGTGCAAACTAAGTTATATAAGTATACCAAAGTCTTTATGGA  898

seq1  TATAATCTACATCAAGGAAAATGTGTAAATACAATTTAATTTGTAATTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTACATCAAGGAAAATGTGTAAATACAATTTAATTTGTAATTAA  948

seq1  ATAGAGATAAAATTATCCATTAATTACAATTCAAATTTATTATGTAACTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATAAAATTATCCATTAATTACAATTCAAATTTATTATGTAACTT  998

seq1  AAATAGAATCAATGTTATTTTGCAGAAATGAAATCAGTCATGTGAAGTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAATCAATGTTATTTTGCAGAAATGAAATCAGTCATGTGAAGTGG  1048

seq1  ATGGAGTTCTGCTACCCACTAGTTTTCTAGAATTC  1080
      |||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTCTGCTACCCACTAGTTTTCTAGAATTC  1083


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