BAC Information

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BAC

Clone NameB6Ng01-332K11
Chromosome18 (Build37)
Map Location 57,222,337 - 57,384,218
singlet/doubletdoublet
Overlap geneMegf10
Upstream geneLOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik
Downstream geneLOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332K11.bB6Ng01-332K11.g
ACCGA118695GA118696
length1,1291,136
definitionB6Ng01-332K11.b B6Ng01-332K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,383,100 - 57,384,218)(57,222,337 - 57,223,483)
sequence
gaattcagggccaacctgctttacacaagtgtcctgtcaaacatggctac
gcagtgagaccctgtctcaaaaacaaagttcatcaaccctaactaatatc
ttgcacagaggtttttttttcctccataatgtttctctggaggctccatc
ccgcctcctgctcttcctcctctaagtcttactaatctgttgccttttac
taacgtcttcagcttcaaaagacagcacgctaccgtggtttaaaagtact
ggctccgaatgagatccaaaccttcgtccaccatgagcagatacacaaac
tcaggcaagtccatttttctacacatgcatacagtgcgtgcgtaaacaca
aacacacacacacacacaccaggacctgtacttttaaccatggcatagaa
tagcactaagtgagttcatccctgtgccttcacaatgatgtttggtgagc
accaaatgcaagacaaagatgagttaggtcaccaccaccaccatcatcat
catcatcatcaccagtgtgatgatacttttctccacactatcacgtcttc
tatcagtgtatcacctctccggtctgttttaaagggcagacaaaacagga
gagcaagaccataaaaaataaatctcttcaggtccaccctgaatacccat
ggacctatgtgtactgctccgggtcctccttccctgttctcctgggaaca
cagtgtatgcacatcactaatgtcccatcagagctggggtcctgtgccac
ctagaatcatcttccctcaattacctgatctcctttctcaactgagtccc
cagcctcagagcctctgagaagggcaacaaagcctcttcttagcctcacg
tctaatggcttctcagagaactttctggaagaatagtctatactcagtca
tcttttcatgtcctatgccaatctgttctgttcctggcacagcaaggagc
ccttcttgcctctgtcctttcagagtcctctctaccataccaaccccatt
cagctttctttggtctgtgtcttacgttgctctgaagctatgtcttggga
gaattagtagccattcatctttttccttctaattccctcgggcgtccaag
caccaattgttctgcaccgctgttaacca
gaattccatctcattctcattagccatattagccagtttaatggagacag
aagaagtaatcattttttatcatgttctggatgccaataattgatggata
atgtaactgttgttatgaccgctgcagcaagccctgtgattttatattga
agggtagagaagagggatctcttaggccacacagccactctttcaaacag
gttagctctttggagtgttttaaacttaaacttctggatatgatgtataa
atataaaaccaagctgagatcttcctcccagtgggttattcatgagaccg
cttttttatccaagatagatatgcccatttatttcctcctgctcttttta
tccaagatatgcccatttcctcctgctctttcaaggccttgaaattaaaa
aaaaacaaaaccctagaactctgtaatatagatttctcagtttccctgaa
gcacctagaattggtttttctctcttcctttagaatcccaggaatgagtc
ttctcttcttagtatagctctacacacatgtcattaagctgatttattgt
attatgcaccactgtacgcttagctatcatggctttctctcattgtgaga
atgaaacaattattcagagcctactataatgaaaggattttgcccaattc
tgaaagcactaggcactggggatttttctaaaaggcctgattttattaag
gtttaccagtggggtgggtttgaagagacagaagtgaagaaattatgaac
acaaatagaatgcaagattcaaagcaggaacatgtggcccagagcttcac
atgctgacgcaaaacacttttgaaggatagaatttttattcgggttttga
atagcactgtaatgtcttagaagatatttcattttggcgagtttttatct
gctttttgaaacatgactgcatgttaacttttttaaaaaaatattttctt
tatttacaattcaaatgttatcccatttcctagttcccctgaaaccccct
cctcgtatctcttcccccttctaccaacacatccacctcccagtgactgg
tcctgcatcccctatacctgggcaaacacttcacaggacattgccttttc
ttccactgattgacgactaggcatcctcctgctaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_57383100_57384218
seq2: B6Ng01-332K11.b_47_1175 (reverse)

seq1  TGGTT-ACAGC-GTGCAGAACA--TTGTGC-TGGACG-CCGAGG--AATA  42
      ||||| ||||| ||||||||||  | |||| |||||| ||||||  | ||
seq2  TGGTTAACAGCGGTGCAGAACAATTGGTGCTTGGACGCCCGAGGGAATTA  50

seq1  G-AGGAAAAAGATGAATGGCTACTAA-TCTCCC-AGACATAGCTTCAGAG  89
      | |||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  GAAGGAAAAAGATGAATGGCTACTAATTCTCCCAAGACATAGCTTCAGAG  100

seq1  CAACGTAAGACACCAGACCAAAGAAAGCTGAATGGGGTTGGTATGGTAGA  139
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAACGTAAGACA-CAGACCAAAGAAAGCTGAATGGGGTTGGTATGGTAGA  149

seq1  GAGGACTCTGAAAGGACAGAGGCAAGAAGGGCTCCTTGCTGTGCCAGGAA  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCTGAAAGGACAGAGGCAAGAAGGGCTCCTTGCTGTGCCAGGAA  199

seq1  CAGAACAGATTGGCATAGGACATGAAAAGATGACTGAGTATAGACTATTC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGATTGGCATAGGACATGAAAAGATGACTGAGTATAGACTATTC  249

seq1  TTCCAGAAAGTTCTCTGAGAAGCCATTAGACGTGAGGCTAAGAAGAGGCT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAAGTTCTCTGAGAAGCCATTAGACGTGAGGCTAAGAAGAGGCT  299

seq1  TTGTTGCCCTTCTCAGAGGCTCTGAGGCTGGGGACTCAGTTGAGAAAGGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCCTTCTCAGAGGCTCTGAGGCTGGGGACTCAGTTGAGAAAGGA  349

seq1  GATCAGGTAATTGAGGGAAGATGATTCTAGGTGGCACAGGACCCCAGCTC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGTAATTGAGGGAAGATGATTCTAGGTGGCACAGGACCCCAGCTC  399

seq1  TGATGGGACATTAGTGATGTGCATACACTGTGTTCCCAGGAGAACAGGGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGACATTAGTGATGTGCATACACTGTGTTCCCAGGAGAACAGGGA  449

seq1  AGGAGGACCCGGAGCAGTACACATAGGTCCATGGGTATTCAGGGTGGACC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACCCGGAGCAGTACACATAGGTCCATGGGTATTCAGGGTGGACC  499

seq1  TGAAGAGATTTATTTTTTATGGTCTTGCTCTCCTGTTTTGTCTGCCCTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGATTTATTTTTTATGGTCTTGCTCTCCTGTTTTGTCTGCCCTTT  549

seq1  AAAACAGACCGGAGAGGTGATACACTGATAGAAGACGTGATAGTGTGGAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGACCGGAGAGGTGATACACTGATAGAAGACGTGATAGTGTGGAG  599

seq1  AAAAGTATCATCACACTGGTGATGATGATGATGATGATGGTGGTGGTGGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATCATCACACTGGTGATGATGATGATGATGATGGTGGTGGTGGT  649

seq1  GACCTAACTCATCTTTGTCTTGCATTTGGTGCTCACCAAACATCATTGTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAACTCATCTTTGTCTTGCATTTGGTGCTCACCAAACATCATTGTG  699

seq1  AAGGCACAGGGATGAACTCACTTAGTGCTATTCTATGCCATGGTTAAAAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAGGGATGAACTCACTTAGTGCTATTCTATGCCATGGTTAAAAG  749

seq1  TACAGGTCCTGGTGTGTGTGTGTGTGTGTTTGTGTTTACGCACGCACTGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTCCTGGTGTGTGTGTGTGTGTGTTTGTGTTTACGCACGCACTGT  799

seq1  ATGCATGTGTAGAAAAATGGACTTGCCTGAGTTTGTGTATCTGCTCATGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGTAGAAAAATGGACTTGCCTGAGTTTGTGTATCTGCTCATGG  849

seq1  TGGACGAAGGTTTGGATCTCATTCGGAGCCAGTACTTTTAAACCACGGTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGAAGGTTTGGATCTCATTCGGAGCCAGTACTTTTAAACCACGGTA  899

seq1  GCGTGCTGTCTTTTGAAGCTGAAGACGTTAGTAAAAGGCAACAGATTAGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCTGTCTTTTGAAGCTGAAGACGTTAGTAAAAGGCAACAGATTAGT  949

seq1  AAGACTTAGAGGAGGAAGAGCAGGAGGCGGGATGGAGCCTCCAGAGAAAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTAGAGGAGGAAGAGCAGGAGGCGGGATGGAGCCTCCAGAGAAAC  999

seq1  ATTATGGAGGAAAAAAAAACCTCTGTGCAAGATATTAGTTAGGGTTGATG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGAGGAAAAAAAAACCTCTGTGCAAGATATTAGTTAGGGTTGATG  1049

seq1  AACTTTGTTTTTGAGACAGGGTCTCACTGCGTAGCCATGTTTGACAGGAC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTTTTTGAGACAGGGTCTCACTGCGTAGCCATGTTTGACAGGAC  1099

seq1  ACTTGTGTAAAGCAGGTTGGCCCTGAATTC  1119
      ||||||||||||||||||||||||||||||
seq2  ACTTGTGTAAAGCAGGTTGGCCCTGAATTC  1129

seq1: chr18_57222337_57223483
seq2: B6Ng01-332K11.g_67_1202

seq1  GAATTCCATCTCATTCTCATTAGCCATATTAGCCAGTTTAATGGAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCATTCTCATTAGCCATATTAGCCAGTTTAATGGAGACAG  50

seq1  AAGAAGTAATCATTTTTTATCATGTTCTGGATGCCAATAATTGATGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAATCATTTTTTATCATGTTCTGGATGCCAATAATTGATGGATA  100

seq1  ATGTAACTGTTGTTATGACCGCTGCAGCAAGCCCTGTGATTTTATATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTGTTGTTATGACCGCTGCAGCAAGCCCTGTGATTTTATATTGA  150

seq1  AGGGTAGAGAAGAGGGATCTCTTAGGCCACACAGCCACTCTTTCAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGAGAAGAGGGATCTCTTAGGCCACACAGCCACTCTTTCAAACAG  200

seq1  GTTAGCTCTTTGGAGTGTTTTAAACTTAAACTTCTGGATATGATGTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTCTTTGGAGTGTTTTAAACTTAAACTTCTGGATATGATGTATAA  250

seq1  ATATAAAACCAAGCTGAGATCTTCCTCCCAGTGGGTTATTCATGAGACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAACCAAGCTGAGATCTTCCTCCCAGTGGGTTATTCATGAGACCG  300

seq1  CTTTTTTATCCAAGATAGATATGCCCATTTATTTCCTCCTGCTCTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATCCAAGATAGATATGCCCATTTATTTCCTCCTGCTCTTTTTA  350

seq1  TCCAAGATATGCCCATTTCCTCCTGCTCTTTCAAGGCCTTGAAATTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATATGCCCATTTCCTCCTGCTCTTTCAAGGCCTTGAAATTAAAA  400

seq1  AAAAACAAAACCCTAGAACTCTGTAATATAGATTTCTCAGTTTCCCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACCCTAGAACTCTGTAATATAGATTTCTCAGTTTCCCTGAA  450

seq1  GCACCTAGAATTGGTTTTTCTCTCTTCCTTTAGAATCCCAGGAATGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTAGAATTGGTTTTTCTCTCTTCCTTTAGAATCCCAGGAATGAGTC  500

seq1  TTCTCTTCTTAGTATAGCTCTACACACATGTCATTAAGCTGATTTATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTTAGTATAGCTCTACACACATGTCATTAAGCTGATTTATTGT  550

seq1  ATTATGCACCACTGTACGCTTAGCTATCATGGCTTTCTCTCATTGTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCACCACTGTACGCTTAGCTATCATGGCTTTCTCTCATTGTGAGA  600

seq1  ATGAAACAATTATTCAGAGCCTACTATAATGAAAGGATTTTGCCCAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAATTATTCAGAGCCTACTATAATGAAAGGATTTTGCCCAATTC  650

seq1  TGAAAGCACTAGGCACTGGGGATTTTTCTAAAAGGCCTGATTTTATTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCACTAGGCACTGGGGATTTTTCTAAAAGGCCTGATTTTATTAAG  700

seq1  GTTTACCAGTGGGGTGGGTTTGAAGAGACAGAAGTGAAGAAATTATGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCAGTGGGGTGGGTTTGAAGAGACAGAAGTGAAGAAATTATGAAC  750

seq1  ACAAATAGAATGCAAGATTCAAAGCAGGAACATGTGGCCCAGAGCTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGAATGCAAGATTCAAAGCAGGAACATGTGGCCCAGAGCTTCAC  800

seq1  ATGCTGACGCAAAACACTTTTGAAGGATAGAATTTTTATTCGGGTTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGACGCAAAACACTTTTGAAGGATAGAATTTTTATTCGGGTTTTGA  850

seq1  ATAGCACTGTAATGTCTTAGAAGATATTTCATTTTGGCGAGTTTTTAATC  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAGCACTGTAATGTCTTAGAAGATATTTCATTTTGGCGAGTTTTT-ATC  899

seq1  TGCTTTTTGAAACATGACTGCATGTTTAACTTTTTTAAAAAAATATTTTC  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCTTTTTGAAACATGACTGCATG-TTAACTTTTTTAAAAAAATATTTTC  948

seq1  TTTATTTACAATTCAAATGTTATCCCATTTCCTAGTTTCCCCCTGAAAAC  1000
      |||||||||||||||||||||||||||||||||||||  |||||| ||||
seq2  TTTATTTACAATTCAAATGTTATCCCATTTCCTAGTT--CCCCTG-AAAC  995

seq1  CCCCTCCTCGTATCTCTTCCCCCTTCTTACCAACACATCCA-CTCCCACT  1049
      |||||||||||||||||||||||||| |||||||||||||| |||||| |
seq2  CCCCTCCTCGTATCTCTTCCCCCTTC-TACCAACACATCCACCTCCCAGT  1044

seq1  TACTGGTCCTGGCATTCCCCTATACTGGGGCATACAACCTTCACAGGACC  1099
       ||||||||| ||| ||||||||||  ||||| |||  ||||||||||| 
seq2  GACTGGTCCT-GCA-TCCCCTATACCTGGGCAAACA--CTTCACAGGAC-  1089

seq1  AATGGCCTCTCCTCCCACTGATGACCGACTAGGCCATCCT-CTGCTACA  1147
       || |||| | || ||||||||   |||||||| |||||| ||||||||
seq2  -ATTGCCTTTTCTTCCACTGATTGACGACTAGG-CATCCTCCTGCTACA  1136